1. e.3.1 beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like contains a cluster of helices and an alpha+beta sandwich 1pw1 d1pw1a_ A:24-33,34-43,304-312,316-325,328-345 2zc4 d2zc4b1 B:287-297,298-308,568-577,581-591,596-615 1yqs d1yqsa1 A:24-33,34-43,304-312,316-325,328-345 1hvb d1hvba_ A:24-33,34-43,304-312,316-325,328-345 1pwc d1pwca_ A:24-33,34-43,304-312,316-325,328-345 1sde d1sdea_ A:24-33,34-43,304-312,316-325,328-345 1pwd d1pwda_ A:24-33,34-43,304-312,316-325,328-345 1ceg d1cega_ A:24-33,34-43,304-312,316-325,328-345 1pwg d1pwga_ A:24-33,34-43,304-312,316-325,328-345 1scw d1scwa_ A:24-33,34-43,304-312,316-325,328-345 1iki d1ikia_ A:24-33,34-43,304-312,316-325,328-345 2z2l d2z2lb1 B:287-297,298-308,566-577,581-591,596-615 1mpl d1mpla_ A:24-33,34-43,304-312,316-325,328-345 1ikg d1ikga_ A:24-33,34-43,304-312,316-325,328-345 1pw8 d1pw8a_ A:24-33,34-43,304-312,316-325,328-345 3pte d3ptea_ A:24-33,34-43,304-312,316-325,328-345 2zc4 d2zc4e1 E:287-297,298-308,566-577,581-591,596-615 2z2l d2z2le1 E:287-297,298-308,566-577,581-591,596-615 1cef d1cefa_ A:24-33,34-43,304-312,316-326,328-345 1k25 d1k25b4 B:1287-1297,1298-1307,1566-1577,1581-1591,1596-1615 1mwt d1mwtb3 B:344-352,354-364,612-622,626-635,640-658 1k25 d1k25d4 D:3287-3297,3298-3307,3566-3577,3581-3591,3596-3612 1rp5 d1rp5b4 B:287-297,298-307,566-577,581-591,596-615 2zc3 d2zc3b1 B:287-297,298-307,566-577,581-591,596-615 1k25 d1k25c4 C:2287-2297,2298-2307,2566-2577,2582-2591,2596-2615 1pyy d1pyya4 A:287-297,298-307,566-577,581-591,596-615 2z2m d2z2mb1 B:287-297,298-307,566-577,581-591,596-615 2z2m d2z2me1 E:287-297,298-308,566-577,581-591,596-615 1rp5 d1rp5a4 A:287-297,298-307,566-577,581-591,596-615 1pmd d1pmda4 A:287-297,298-308,566-577,581-591,596-615 2zc3 d2zc3e1 E:287-297,298-307,566-577,581-591,596-615 2efu d2efuf1 F:21-30,31-41,313-323,324-334,341-358 2drw d2drwf1 F:21-30,31-41,313-323,324-334,341-358 1k25 d1k25a4 A:287-297,298-307,566-577,582-591,596-615 2efu d2efua1 A:21-30,31-41,313-323,324-334,341-363 1qme d1qmea4 A:287-297,298-307,566-577,581-591,596-618 1mwu d1mwua3 A:344-353,354-364,613-622,626-635,640-658 2drw d2drwa1 A:21-30,31-41,313-323,324-334,341-363 1mws d1mwsa3 A:344-353,354-364,613-622,626-635,640-658 1fr1 d1fr1b_ B:25-35,37-45,321-331,332-342,345-361 1xx2 d1xx2a_ A:26-35,36-45,321-331,332-342,345-360 2efx d2efxc1 C:21-30,31-41,313-323,324-334,341-363 1hzo d1hzob_ B:42-52,53-61,242-252,257-267,275-293 2efx d2efxa1 A:21-30,31-41,313-323,324-334,341-363 2olv d2olva2 A:357-368,369-378,602-613,615-625,637-656 1fr6 d1fr6b_ B:25-35,37-45,321-331,332-342,345-361 1qmf d1qmfa4 A:287-297,298-307,566-577,581-591,596-618 1hzo d1hzoa_ A:42-52,53-61,242-252,257-267,275-293 2dns d2dnsa1 A:21-30,31-41,313-323,324-334,341-363 2olu d2olua2 A:357-368,369-378,602-613,615-625,637-656 1ga0 d1ga0a_ A:26-35,36-45,324-334,335-345,348-364 1xx2 d1xx2b_ B:1026-1035,1036-1045,1321-1331,1332-1342,1345-1360 1fr6 d1fr6a_ A:26-35,37-45,321-331,332-342,345-361 2c5w d2c5wb1 B:327-337,338-347,578-588,590-599,607-627 1bls d1blsb_ B:26-35,36-45,321-331,332-342,345-360 1iyq d1iyqa_ A:42-52,53-61,242-252,257-267,275-288 1rgz d1rgza_ A:26-35,36-45,324-334,335-345,348-364 2blm d2blmb_ B:42-52,53-61,242-252,257-267,275-295 2drw d2drwc1 C:21-30,31-41,313-323,324-334,341-363 2dns d2dnsc1 C:21-30,31-41,313-323,324-334,341-362 1onh d1onha_ A:26-35,36-45,324-334,335-345,348-364 2dns d2dnsd1 D:21-30,34-41,313-323,324-334,341-362 2efu d2efud1 D:21-30,34-41,313-323,324-334,341-363 1q2q d1q2qa_ A:26-35,36-45,324-334,335-345,348-364 1dy6 d1dy6b_ B:42-52,53-61,241-252,257-268,275-291 2dns d2dnsb1 B:21-30,34-41,313-323,324-334,341-363 1mwr d1mwrb3 B:344-353,354-364,612-622,626-635,640-658 3dwk d3dwkc2 C:357-368,369-378,602-613,615-625,637-656 1kdw d1kdwa_ A:26-35,37-45,321-331,332-342,345-361 1kvm d1kvma_ A:26-35,37-45,321-331,332-342,345-361 3dwk d3dwkb2 B:357-368,369-378,602-613,615-625,637-656 2olv d2olvb2 B:357-368,369-378,603-613,615-625,637-656 1fco d1fcoa_ A:23-32,34-42,318-328,329-339,342-358 3dwk d3dwkd2 D:357-368,369-378,602-613,615-625,637-656 2q9n d2q9na1 A:26-35,36-45,321-331,332-342,345-360 3dwk d3dwka2 A:357-368,369-378,602-613,615-625,637-656 1kvm d1kvmb_ B:26-35,37-45,321-331,332-342,345-361 1gce d1gcea_ A:26-35,36-45,324-334,335-345,348-364 1ke0 d1ke0a_ A:26-35,37-45,321-331,332-342,345-361 1rgy d1rgya_ A:26-35,37-45,321-331,332-342,345-361 1l0e d1l0ea_ A:26-35,37-45,321-331,332-342,345-361 2efu d2efub1 B:21-30,34-41,313-323,324-334,341-363 2efx d2efxd1 D:21-30,34-41,313-323,324-334,341-363 1nzu d1nzua2 A:18-26,27-35,221-231,232-243,244-263 2efu d2efuc1 C:21-30,31-41,313-323,324-334,341-363 3brm d3brmb1 B:48-56,58-65,272-281,291-300,308-323 2q9m d2q9ma1 A:26-35,36-45,321-331,332-342,345-360 1fsw d1fswa_ A:26-35,37-45,321-331,332-342,345-361 1ga9 d1ga9a_ A:26-35,37-45,321-331,332-342,345-361 1ei5 d1ei5a3 A:23-32,34-43,293-303,304-314,317-331 1ke3 d1ke3b_ B:26-35,37-45,321-331,332-342,345-361 1dy6 d1dy6a_ A:41-52,53-61,241-252,257-268,275-291 1llb d1llba_ A:26-35,37-45,321-331,332-342,345-361 1pi5 d1pi5a_ A:26-35,37-45,321-331,332-342,345-361 1l0d d1l0da_ A:26-35,37-45,321-331,332-342,345-361 2hdq d2hdqb1 B:26-35,37-45,321-331,332-342,345-361 2rcx d2rcxa1 A:26-35,37-45,321-331,332-342,345-361 1nj4 d1nj4a2 A:18-26,27-35,221-231,232-243,244-263 1fsy d1fsyb_ B:26-35,37-45,321-331,332-342,345-361 2efx d2efxe1 E:21-30,31-41,313-323,324-334,341-363 2hdq d2hdqa1 A:26-35,37-45,321-331,332-342,345-361 1z6f d1z6fa2 A:18-26,27-35,221-231,232-243,244-263 1bls d1blsa_ A:26-35,37-45,321-331,332-342,345-360 1pi4 d1pi4a_ A:26-35,37-45,321-331,332-342,345-361 3bec d3beca2 A:18-26,27-35,221-231,232-243,244-263 2pu4 d2pu4a1 A:26-35,37-45,321-331,332-342,345-361 1ll9 d1ll9a_ A:26-35,37-45,321-331,332-342,345-361 1mxo d1mxoa_ A:26-35,37-45,321-331,332-342,345-361 1ke3 d1ke3a_ A:26-35,37-45,321-331,332-342,345-361 1fcn d1fcna_ A:23-32,34-42,318-328,329-339,342-358 1iem d1iema_ A:26-35,37-45,321-331,332-342,345-361 2r9w d2r9wb1 B:26-35,37-45,321-331,332-342,345-361 2drw d2drwb1 B:21-30,31-41,313-323,324-334,341-363 1iyo d1iyoa_ A:42-52,53-61,242-252,257-267,275-288 1i5q d1i5qa_ A:26-35,37-45,321-331,332-342,345-361 1esi d1esia_ A:9-17,18-26,221-231,232-241,244-262 1my8 d1my8a_ A:26-35,37-45,321-331,332-342,345-361 1ke4 d1ke4a_ A:26-35,37-45,321-331,332-342,345-361 2hdr d2hdra1 A:26-35,37-45,321-331,332-342,345-361 2r9x d2r9xb1 B:26-35,37-45,321-331,332-342,345-361 2drw d2drwe1 E:21-30,31-41,313-323,324-334,341-363 1pi4 d1pi4b_ B:26-35,37-45,321-331,332-342,345-361 2pu4 d2pu4b1 B:26-35,37-45,321-331,332-342,345-361 2hds d2hdsa1 A:26-35,37-45,321-331,332-342,345-361 1iel d1iela_ A:26-35,37-45,321-331,332-342,345-361 2pu2 d2pu2a1 A:26-35,37-45,321-331,332-342,345-361 1nzo d1nzoa2 A:18-26,27-35,221-231,232-243,247-263 2hdu d2hdua1 A:26-35,37-45,321-331,332-342,345-361 1llb d1llbb_ B:26-35,37-45,321-331,332-342,345-361 1iel d1ielb_ B:26-35,37-45,321-331,332-342,345-361 1fsy d1fsya_ A:26-35,37-45,321-331,332-342,345-361 1l0g d1l0ga_ A:26-35,37-45,321-331,332-342,345-361 1l2s d1l2sb_ B:26-35,37-45,321-331,332-342,345-361 2p9v d2p9va1 A:26-35,37-45,321-331,332-342,345-361 1wyc d1wyca1 A:81-90,91-101,346-355,356-365,371-390 1l2s d1l2sa_ A:26-35,37-45,321-331,332-342,345-361 2pu2 d2pu2b1 B:26-35,37-45,321-331,332-342,345-361 1hd8 d1hd8a2 A:18-26,27-35,221-231,232-243,244-263 1l0f d1l0fa_ A:26-35,37-45,321-331,332-342,345-361 2ffy d2ffya1 A:26-35,37-45,321-331,332-342,345-361 1o07 d1o07a_ A:26-35,37-45,321-331,332-342,345-361 1my8 d1my8b_ B:26-35,37-45,321-331,332-342,345-361 2efu d2efue1 E:21-30,31-41,313-323,324-334,341-363 1ci9 d1ci9a_ A:36-45,46-56,352-361,362-371,379-391 2r9w d2r9wa1 A:26-35,37-45,321-331,332-342,345-361 2hds d2hdsb1 B:26-35,37-45,321-331,332-342,345-361 1iyp d1iypa_ A:42-52,53-61,242-252,257-267,275-288 1sdn d1sdna2 A:18-26,27-35,221-231,232-243,244-263 3brm d3brma1 A:48-56,58-65,272-282,290-300,308-323 2drw d2drwd1 D:21-30,34-41,313-323,324-334,341-363 1wyb d1wyba1 A:81-90,91-101,346-355,356-365,371-390 2p9v d2p9vb1 B:26-35,37-45,321-331,332-342,345-361 1l0d d1l0db_ B:26-35,37-45,321-331,332-342,345-361 1pi5 d1pi5b_ B:26-35,37-45,321-331,332-342,345-361 2hdu d2hdub1 B:26-35,37-45,321-331,332-342,345-361 2osu d2osub1 B:48-56,58-65,272-282,290-300,308-323 2dns d2dnse1 E:21-30,31-41,313-323,324-334,341-361 4blm d4blma_ A:42-52,53-61,241-252,257-268,275-291 1i5q d1i5qb_ B:26-35,37-45,321-331,332-342,345-361 1c3b d1c3ba_ A:26-35,37-45,321-331,332-342,345-361 3beb d3beba2 A:18-26,27-35,221-231,232-243,244-263 2ffy d2ffyb1 B:26-35,37-45,321-331,332-342,345-361 1iys d1iysa_ A:42-52,53-61,242-252,257-267,275-288 1xp4 d1xp4b2 B:30-38,39-47,247-257,258-269,276-294 1o7e d1o7ea_ A:42-52,53-61,242-253,257-267,271-291 2dcf d2dcfa1 A:81-90,91-101,346-355,356-365,371-390 1n4o d1n4oa_ A:42-52,53-61,242-253,257-267,271-291 1ll5 d1ll5a_ A:26-35,37-45,321-331,332-342,345-361 1l0f d1l0fb_ B:26-35,37-45,321-331,332-342,345-361 2r9x d2r9xa1 A:26-35,37-45,321-331,332-342,345-361 1kvl d1kvla_ A:26-35,37-45,321-331,332-342,345-361 1kvl d1kvlb_ B:26-35,37-45,321-331,332-342,345-361 1xgi d1xgia1 A:26-35,37-45,321-331,332-342,345-361 1ke4 d1ke4b_ B:26-35,37-45,321-331,332-342,345-361 1l0e d1l0eb_ B:26-35,37-45,321-331,332-342,345-361 1mki d1mkib_ B:48-56,58-65,272-282,290-300,308-323 2i72 d2i72a1 A:26-35,37-45,321-331,332-342,345-361 1xgj d1xgja1 A:26-35,37-45,321-331,332-342,345-361 1j9m d1j9ma_ A:9-17,18-26,221-231,232-243,244-262 1kds d1kdsb_ B:26-35,37-45,321-331,332-342,345-361 1ci8 d1ci8a_ A:36-45,46-56,352-361,362-371,379-391 1mki d1mkia_ A:48-56,58-65,272-282,290-300,308-323 2blm d2blma_ A:42-52,53-61,241-252,257-268,275-295 1ll9 d1ll9b_ B:26-35,37-45,321-331,332-342,345-361 1htz d1htzb_ B:42-52,53-61,242-254,258-267,271-290 1ci8 d1ci8b_ B:36-45,46-56,352-361,362-371,379-391 2rcx d2rcxb1 B:26-35,37-45,321-331,332-342,345-361 2hdr d2hdrb1 B:26-35,37-45,321-331,332-342,345-361 1mwu d1mwub3 B:344-353,354-364,615-622,627-633,642-658 2osu d2osua1 A:48-56,58-65,272-282,290-300,308-323 2i72 d2i72b1 B:26-35,37-45,321-331,332-342,345-361 1ll5 d1ll5b_ B:26-35,37-45,321-331,332-342,345-361 2cc1 d2cc1a1 A:41-52,53-61,242-254,256-268,277-293 1iem d1iemb_ B:26-35,37-45,321-331,332-342,345-361 1kds d1kdsa_ A:26-35,37-45,321-331,332-342,345-361 1kdw d1kdwb_ B:26-35,37-45,321-331,332-342,345-361 1w8q d1w8qb1 B:21-31,32-40,416-427,428-439,445-461 1fr1 d1fr1a_ A:26-35,37-45,321-331,332-342,345-361 1xp4 d1xp4d2 D:30-38,39-47,247-257,258-267,276-294 1es5 d1es5a_ A:9-17,18-26,221-231,232-243,244-262 1es2 d1es2a_ A:9-17,18-26,221-231,232-243,244-262 1htz d1htzd_ D:42-52,53-61,242-254,258-267,271-290 1u60 d1u60c_ C:41-48,50-57,263-271,273-281,289-304 1u60 d1u60a_ A:41-48,50-57,263-271,273-281,289-304 1bza d1bzaa_ A:42-52,53-61,242-252,257-267,275-287 1o07 d1o07b_ B:26-35,37-45,321-331,332-342,345-361 1ci9 d1ci9b_ B:36-45,46-56,353-361,362-371,379-391 1htz d1htze_ E:42-52,53-61,242-254,258-267,271-290 1w8q d1w8qc1 C:21-31,32-40,416-427,428-439,445-461 1w8y d1w8yc1 C:21-31,32-40,416-427,428-439,445-461 1ke0 d1ke0b_ B:26-35,37-45,321-331,332-342,345-361 1vm1 d1vm1a_ A:41-52,53-61,242-251,258-267,271-290 1ga9 d1ga9b_ B:27-35,37-44,321-331,332-342,345-361 1fcm d1fcma_ A:23-32,34-42,318-328,329-339,342-358 1u60 d1u60b_ B:41-48,50-57,263-271,273-281,289-304 1s6r d1s6ra_ A:26-35,37-45,321-331,332-342,345-361 1n4o d1n4ob_ B:42-52,53-61,242-253,258-267,271-291 1u60 d1u60d_ D:41-48,50-57,263-271,273-281,289-304 1htz d1htzc_ C:42-52,53-61,242-254,258-267,271-290 1htz d1htzf_ F:41-52,53-61,242-252,258-267,271-290 1i2w d1i2wa_ A:42-52,53-61,241-254,257-268,275-290 2bls d2blsb_ B:26-35,37-45,321-331,332-342,345-360 2efx d2efxb1 B:21-30,31-41,313-323,324-334,341-363 2bls d2blsa_ A:26-35,37-45,321-331,332-342,345-360 1skf d1skfa_ A:9-17,18-26,221-231,232-242,244-262 1w5d d1w5da1 A:24-34,35-43,417-427,431-441,444-462 2fff d2fffb1 B:420-430,431-440,660-667,669-678,685-709 1xa1 d1xa1c_ C:29-39,40-47,207-218,219-231,234-250 1w8q d1w8qa1 A:20-31,32-40,416-427,428-439,445-461 1i2s d1i2sa_ A:42-52,53-61,241-254,257-268,275-290 1o7e d1o7eb_ B:42-52,53-61,242-253,258-267,271-291 1htz d1htza_ A:42-52,53-61,242-254,258-267,271-290 1i2s d1i2sb_ B:42-52,53-61,241-254,257-268,275-290 2bg1 d2bg1a1 A:420-430,431-440,660-667,669-678,685-709 1w8y d1w8yb1 B:21-31,33-40,416-427,428-439,445-461 1mbl d1mbla_ A:42-52,53-61,242-254,257-267,275-291 4blm d4blmb_ B:42-52,53-61,242-254,257-267,275-291 1w8y d1w8ya1 A:20-31,32-40,416-427,428-439,445-461 1xp4 d1xp4a2 A:30-38,39-47,247-257,258-267,276-294 1mbl d1mblb_ B:42-52,53-61,242-254,257-267,275-291 1mws d1mwsb3 B:344-353,354-364,612-622,627-635,640-658 1vqq d1vqqa3 A:344-353,354-364,612-622,627-635,640-658 1w79 d1w79a1 A:20-31,32-40,416-427,428-439,445-461 1mwt d1mwta3 A:344-352,354-364,612-622,627-635,640-658 1i2w d1i2wb_ B:42-52,53-61,241-254,257-268,275-290 1es4 d1es4a_ A:9-17,18-26,221-231,232-242,244-262 2uwx d2uwxa1 A:420-430,431-440,660-667,669-678,685-709 1vqq d1vqqb3 B:344-353,354-364,612-622,627-635,640-658 1xp4 d1xp4c2 C:30-38,39-47,247-257,258-267,276-294 1xa7 d1xa7a_ A:29-39,40-47,207-218,219-231,234-251 1w79 d1w79c1 C:20-31,32-40,416-427,428-439,445-461 1w79 d1w79b1 B:20-31,32-40,416-427,428-439,445-461 1bsg d1bsga_ A:43-52,53-61,241-254,255-268,275-291 1mwr d1mwra3 A:344-353,354-363,612-622,627-635,640-658 2c6w d2c6wb1 B:327-337,338-347,578-588,590-599,607-629 1bue d1buea_ A:42-52,53-61,241-253,255-268,275-290 2j9p d2j9pb1 B:24-34,35-43,417-428,430-441,444-462 1bul d1bula_ A:42-52,53-61,241-253,255-268,275-290 1g6a d1g6aa_ A:43-52,53-61,242-254,255-267,271-292 1es3 d1es3a_ A:9-17,18-26,221-231,232-242,244-262 1xa1 d1xa1b_ B:29-39,40-47,204-218,219-231,234-250 1w79 d1w79d1 D:20-31,32-40,416-427,428-439,445-461 1tvf d1tvfa2 A:50-57,59-66,267-277,278-289,296-316 1djc d1djca_ A:42-52,53-61,242-253,258-267,275-290 1g68 d1g68a_ A:43-52,53-61,242-254,255-267,271-292 1n9b d1n9ba_ A:41-52,53-61,242-254,258-267,271-290 1tvf d1tvfb2 B:50-57,59-66,267-277,278-289,296-316 1xa1 d1xa1a_ A:29-39,40-47,204-218,219-231,234-250 1w8y d1w8yd1 D:20-31,32-40,416-427,428-439,445-461 1ghp d1ghpa_ A:42-52,53-61,242-253,258-267,275-290 1xa1 d1xa1d_ D:29-39,40-47,204-218,219-231,234-250 1ny0 d1ny0a_ A:41-52,53-61,242-254,258-267,271-290 1pio d1piob_ B:42-52,53-61,242-253,258-267,275-290 2j9p d2j9pa1 A:24-34,35-43,417-428,430-441,444-462 1kge d1kgea_ A:42-52,53-61,242-253,258-267,275-290 1ghm d1ghma_ A:42-52,53-61,242-253,258-267,275-290 1dja d1djaa_ A:42-52,53-61,242-253,258-267,275-290 1blc d1blca_ A:42-52,53-61,242-253,258-267,275-290 1xkz d1xkzc_ C:359-369,370-377,534-548,549-561,564-580 1xkz d1xkzd_ D:359-369,370-377,534-548,549-561,564-580 1jtd d1jtda_ A:41-52,53-61,241-252,256-265,269-288 1shv d1shva_ A:41-52,53-61,242-254,258-267,271-290 1ck3 d1ck3a_ A:41-52,53-61,242-254,258-267,271-290 1w8q d1w8qd1 D:20-31,32-40,416-427,428-439,445-461 1pio d1pioa_ A:42-52,53-61,242-253,258-267,275-290 1jtg d1jtgc_ C:41-52,53-61,241-252,256-265,269-288 1djb d1djba_ A:42-52,53-61,242-253,258-267,275-290 1jwp d1jwpa_ A:41-52,53-61,242-254,258-267,271-290 1nyy d1nyya_ A:41-52,53-61,242-254,258-267,271-290 1xpb d1xpba_ A:41-51A,52-61,242-254,258-267,271-290 1fqg d1fqga_ A:41-52,53-61,241-252,256-266,269-288 1lhy d1lhya_ A:41-52,53-61,242-254,258-268,271-290 1nym d1nyma_ A:41-52,53-61,242-254,258-267,271-290 3c7u d3c7uc1 C:41-52,53-61,241-252,256-265,269-288 1xkz d1xkza_ A:359-369,370-377,534-548,549-561,564-580 1jvj d1jvja_ A:41-52,53-61,242-254,258-267,271-290 3c7v d3c7vc1 C:41-52,53-61,241-252,256-265,269-288 1erm d1erma_ A:41-52,53-61,241-252,256-265,269-288 1blp d1blpa_ A:42-52,53-61,241-253,258-267,275-290 1ghi d1ghia_ A:42-52,53-61,242-253,258-267,275-290 3blm d3blma_ A:42-52,53-61,242-253,258-267,275-290 1ong d1onga_ A:41-52,53-61,242-254,258-267,271-290 3c7v d3c7va1 A:41-52,53-61,241-252,256-265,269-288 1xkz d1xkzb_ B:359-369,370-377,534-548,549-561,564-580 3c7u d3c7ua1 A:41-52,53-61,241-252,256-265,269-288 1tem d1tema_ A:41-52,53-61,242-254,258-267,271-290 1jwv d1jwva_ A:41-52,53-61,242-254,258-267,271-290 1nxy d1nxya_ A:41-52,53-61,242-254,258-267,271-290 1rcj d1rcja_ A:41-52,53-61,242-254,258-267,271-290 1xa7 d1xa7b_ B:31-38,41-47,204-218,219-229,234-250 2h5s d2h5sa1 A:41-52,53-61,242-254,258-267,271-290 1bt5 d1bt5a_ A:41-52,53-61,242-254,258-267,271-290 1jtg d1jtga_ A:41-52,53-61,241-252,256-265,269-288 1axb d1axba_ A:41-52,53-61,242-254,258-267,271-290 1zg4 d1zg4a1 A:41-52,53-61,242-254,258-267,271-290 2a3u d2a3ua1 A:41-52,53-61,242-254,258-267,271-290 1m40 d1m40a_ A:41-52,53-61,242-254,258-267,271-290 1li0 d1li0a_ A:41-52,53-61,242-254,258-267,271-290 1esu d1esua_ A:41-51A,52-61,242-254,258-267,271-290 1nrf d1nrfa_ A:372-382,383-390,549-561,562-574,577-594 2g2w d2g2wa1 A:41-52,53-61,242-254,258-267,271-290 2g2u d2g2ua1 A:41-52,53-61,242-254,258-267,271-290 1blh d1blha_ A:42-52,53-61,242-253,258-267,275-290 2zd8 d2zd8a1 A:41-52,53-61,242-254,258-267,271-290 3c4p d3c4pa1 A:41-52,53-61,242-254,258-267,271-290 1pzo d1pzoa_ A:41-52,53-61,242-254,258-267,271-290 1kgf d1kgfa_ A:42-52,53-61,242-253,258-267,275-290 1tdg d1tdga_ A:41-52,53-61,242-254,258-267,271-290 1tdl d1tdla_ A:41-52,53-61,242-254,258-267,271-290 1pzp d1pzpa_ A:41-52,53-61,242-254,258-267,271-290 1btl d1btla_ A:41-52,53-61,242-254,258-267,271-290 2a49 d2a49a1 A:41-52,53-61,242-254,258-267,271-290 1ero d1eroa_ A:41-52,53-61,241-252,256-265,269-288 1erq d1erqa_ A:41-52,53-61,241-252,256-265,269-288 1q2p d1q2pa_ A:41-52,53-61,242-254,258-267,271-290 1s0w d1s0wb_ B:41-52,53-61,241-252,256-265,269-288 2b5r d2b5ra1 A:41-52,53-61,241-252,256-265,269-288 1li9 d1li9a_ A:41-52,53-61,242-254,258-267,271-290 1m6k d1m6kb_ B:34-46,47-55,224-236,238-250,255-273 1m6k d1m6ka_ A:34-46,47-55,224-236,238-250,255-273 1ome d1omea_ A:41-52,53-61,242-253,258-268,275-290 1k38 d1k38a_ A:36-45,51-55,211-222,223-234,236-256 1s0w d1s0wa_ A:41-52,53-61,241-252,256-265,269-288 1jwz d1jwza_ A:42-52,53-61,242-254,258-268,271-290 1k38 d1k38b_ B:36-45,51-55,211-222,223-234,236-256 2exa d2exaa1 A:34-43,48-53,423-434,436-447,459-477 2ex9 d2ex9a1 A:34-43,48-53,423-434,436-447,460-477 2b5r d2b5rb1 B:42-52,53-61,241-252,256-265,269-288 2ex6 d2ex6a1 A:34-43,48-53,423-434,436-447,458-477 2exb d2exba1 A:34-43,48-53,423-434,436-447,459-477 2ex8 d2ex8a1 A:34-43,48-53,423-434,436-447,457-477 2ex2 d2ex2a1 A:34-43,48-53,423-434,436-447,457-477 3bls d3blsa_ A:26-35,37-49,321-331,332-342,345-360 1k6s d1k6sb_ B:38-47,48-54,215-229,230-240,243-262 1fcm d1fcmb_ B:23-32,34-46,318-328,329-339,342-358 1k4e d1k4ea_ A:38-47,48-54,215-229,230-240,243-262 1k4f d1k4fb_ B:38-47,48-54,215-229,230-240,243-262 1fof d1fofb_ B:38-47,48-54,215-229,230-240,243-262 3bls d3blsb_ B:26-35,37-49,321-331,332-342,345-360 1k4e d1k4eb_ B:38-47,48-54,215-229,230-240,243-262 1k6r d1k6rb_ B:38-47,48-54,215-229,230-240,243-262 1h8y d1h8yb_ B:38-46,50-54,216-229,230-240,243-262 1ewz d1ewzc_ C:38-46,50-54,215-229,230-240,243-262 1k57 d1k57a_ A:38-46,50-54,215-229,230-240,243-262 1xgj d1xgjb1 B:26-35,37-49,321-331,332-342,345-361 1k57 d1k57c_ C:38-46,50-54,215-229,230-240,243-262 1fsw d1fswb_ B:26-35,37-49,321-331,332-342,345-361 1k6r d1k6ra_ A:38-46,49-54,215-229,230-240,243-262 1mxo d1mxob_ B:26-35,37-49,321-331,332-342,345-361 1fco d1fcob_ B:23-32,34-46,318-328,329-339,342-358 3c4o d3c4oa1 A:43-52,53-61,241-254,258-269,271-290 1ewz d1ewzd_ D:38-46,50-54,215-229,230-240,243-262 1fcn d1fcnb_ B:23-32,34-46,318-328,329-339,342-358 1k57 d1k57d_ D:38-46,50-54,215-229,230-240,243-262 1l0g d1l0gb_ B:26-35,37-49,321-331,332-342,345-361 1kgg d1kgga_ A:42-52,53-61,241-253,258-268,275-290 1c3b d1c3bb_ B:26-35,37-49,321-331,332-342,345-361 1k56 d1k56d_ D:38-46,50-54,215-229,230-240,243-262 1k54 d1k54c_ C:38-46,50-54,215-229,230-240,243-262 1h8z d1h8zb_ B:38-46,50-55,215-229,230-240,243-262 1xgi d1xgib1 B:26-35,37-49,321-331,332-342,345-361 1e4d d1e4da_ A:38-46,50-54,215-229,230-240,243-262 1e3u d1e3ud_ D:38-46,50-54,215-229,230-240,243-262 1k55 d1k55a_ A:38-46,50-54,215-229,230-240,243-262 1k55 d1k55c_ C:38-46,50-54,215-229,230-240,243-262 1k54 d1k54d_ D:38-46,50-54,215-229,230-240,243-262 1k57 d1k57b_ B:38-46,50-54,215-229,230-240,243-262 1e3u d1e3uc_ C:38-46,50-54,215-229,230-240,243-262 1k55 d1k55b_ B:38-46,50-54,215-229,230-240,243-262 1ewz d1ewza_ A:38-46,50-54,215-229,230-240,243-262 1h8z d1h8za_ A:38-46,50-54,215-229,230-240,243-262 1k56 d1k56a_ A:38-46,50-54,215-229,230-240,243-262 1k54 d1k54b_ B:38-46,50-54,215-229,230-240,243-262 1k56 d1k56c_ C:38-46,50-54,215-229,230-240,243-262 1k55 d1k55d_ D:38-46,50-54,215-229,230-240,243-262 1h5x d1h5xb_ B:38-46,50-55,215-229,230-240,243-262 1k56 d1k56b_ B:38-46,50-54,215-229,230-240,243-262 1e4d d1e4dd_ D:38-46,50-54,215-229,230-240,243-262 1e4d d1e4db_ B:38-46,50-54,215-229,230-240,243-262 1e3u d1e3ua_ A:38-46,50-54,215-229,230-240,243-262 1h5x d1h5xa_ A:38-46,50-54,215-229,230-240,243-262 1e3u d1e3ub_ B:38-46,50-54,215-229,230-240,243-262 1ewz d1ewzb_ B:38-46,50-54,215-229,230-240,243-262 1k6s d1k6sa_ A:38-46,50-54,215-229,230-240,243-262 1k54 d1k54a_ A:38-46,50-54,215-229,230-240,243-262 1h8y d1h8ya_ A:38-46,50-54,215-229,230-240,243-262 1k4f d1k4fa_ A:38-46,50-54,215-229,230-240,243-262 1fof d1fofa_ A:38-46,50-54,215-229,230-240,243-262 1e25 d1e25a_ A:41-51,56-61,242-253,256-269,271-297 1e4d d1e4dc_ C:38-46,50-54,215-229,230-240,243-262 1ome d1omeb_ B:42-52,53-61,244-253,258-267,275-290 2. d.110.5 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors alpha(2)-beta(2)-alpha(2)-beta(3)-alpha; possibly related to the PAS domain ! Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha 1h0m d1h0mc2 C:34-44,45-52,111-121,123-133,144-162 1h0m d1h0mb2 B:34-44,45-52,111-121,123-133,144-163 1l3l d1l3lc2 C:35-44,45-52,111-121,123-133,144-162 1l3l d1l3ld2 D:35-44,45-52,111-121,123-133,144-162 1h0m d1h0ma2 A:34-44,45-52,111-121,123-133,144-165 1l3l d1l3lb2 B:34-44,45-52,111-121,123-133,144-163 1l3l d1l3la2 A:34-44,45-52,111-121,123-133,144-163 1h0m d1h0md2 D:34-44,45-52,111-121,123-133,144-163 5. d.110.2 GAF domain-like alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654 ! Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha 3c2w d3c2wa2 A:353-360,361-367,409-419,420-429,475-494 3c2w d3c2we2 E:353-360,361-367,409-419,420-429,475-495 1mkm d1mkmb2 B:93-103,104-115,193-204,206-218,222-245 3c2w d3c2wd2 D:353-360,361-367,409-419,420-429,475-496 3c2w d3c2wc2 C:353-360,361-367,409-419,420-429,475-496 3c2w d3c2wh2 H:353-360,361-367,409-419,420-429,475-496 2o9b d2o9ba1 A:171-180,182-192,270-280,281-292,298-322 3c2w d3c2wg2 G:353-360,361-367,409-419,420-429,475-497 2o9c d2o9ca1 A:171-180,182-192,270-280,281-292,298-322 3c2w d3c2wb2 B:353-360,361-367,409-419,420-429,475-497 1mkm d1mkma2 A:94-103,104-113,193-204,206-218,222-245 3c2w d3c2wf2 F:353-360,361-367,409-419,420-429,475-498 1tf1 d1tf1c_ C:30-39,40-50,129-140,142-154,158-183 1stz d1stza2 A:133-139,230-235,285-297,298-309,313-336 2ool d2oolb1 B:180-189,191-201,279-289,290-301,307-332 1stz d1stzc2 C:133-139,230-235,286-297,298-310,313-336 2o9a d2o9ad1 D:24-33,36-46,125-136,138-150,154-180 1stz d1stzb2 B:133-139,230-235,286-297,298-310,313-336 2ool d2oola1 A:180-189,191-201,279-289,290-301,307-333 1ztu d1ztua1 A:171-180,182-192,270-280,281-292,298-325 2o9a d2o9ac1 C:24-32,37-46,125-136,138-150,154-182 1f5m d1f5ma_ A:63-73,78-87,130-140,142-153,159-177 2k2n d2k2na1 A:49-58,60-70,149-159,160-171,177-202 1f5m d1f5mb_ B:63-73,78-87,130-140,142-153,159-178 2vea d2veaa2 A:366-373,374-381,424-431,435-442,490-517 1mc0 d1mc0a2 A:421-430,431-439,493-503,505-517,523-555 3c2w d3c2wc1 C:158-167,169-179,257-267,268-279,285-333 3c2w d3c2wf1 F:158-167,169-179,257-267,268-279,285-333 3c2w d3c2wg1 G:158-167,169-179,257-267,268-279,285-333 3c2w d3c2wa1 A:158-167,169-179,257-267,268-279,285-333 2vea d2veaa1 A:171-180,182-192,270-280,281-292,298-346 3c2w d3c2wb1 B:158-167,169-179,257-267,268-279,285-333 3c2w d3c2we1 E:158-167,169-179,256-267,268-279,285-333 3c2w d3c2wd1 D:158-167,169-179,257-267,268-279,285-333 3c2w d3c2wh1 H:158-167,169-179,257-267,268-279,285-333 1mc0 d1mc0a1 A:252-260,264-269,322-332,333-344,352-402 6. d.110.7 Roadblock/LC7 domain alpha-beta(2)-alpha-beta(3)-alpha; structurally most similar to the SNARE-like superfamily with a circular permutation of the terminal helices ! Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha 2zl1 d2zl1b1 B:18-27,29-37,78-87,88-97,100-117 1sko d1skob_ B:17-26,28-36,77-86,87-96,99-118 1vet d1vetb_ B:18-27,29-37,78-87,88-97,100-118 1vet d1veta_ A:18-27,29-37,77-85,88-96,99-118 1veu d1veub_ B:18-27,29-36,78-87,88-97,100-118 1j3w d1j3wb_ B:29-37,39-47,91-100,102-111,114-136 1veu d1veua_ A:18-27,29-37,77-85,88-96,99-111 3cpt d3cpta1 A:18-27,29-37,77-85,88-96,110-121 3cpt d3cpta1 A:18-27,29-37,77-85,88-96,99-111 1veu d1veua_ A:18-27,29-37,77-85,88-96,110-120 1j3w d1j3wc_ C:29-37,39-47,91-100,102-111,114-138 1j3w d1j3wd_ D:29-37,39-47,91-100,102-111,114-138 1j3w d1j3wa_ A:29-37,39-47,91-100,102-111,114-139 1sko d1skoa_ A:19-28,30-38,78-86,88-97,100-112 1szv d1szva1 A:19-27,29-35,79-87,89-96,100-111 7. d.110.4 SNARE-like beta(2)-alpha-beta(3)-alpha(2) ! Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha 2j3w d2j3wc1 C:3-12,14-23,69-78,80-89,91-113 2j3w d2j3wa1 A:3-12,14-23,69-78,80-89,91-113 2go5 d2go511 1:2-10,12-20,53-61,62-70,75-95 2fh5 d2fh5a1 A:2-10,12-20,52-61,62-71,75-95 1h8m d1h8ma_ A:2-13,14-24,63-71,75-82,86-106 1h3q d1h3qa_ A:3-12,14-24,69-78,80-89,91-113 1nrj d1nrja_ A:2-9,11-20,73-81,84-92,95-117 1iou d1ioua_ A:2-13,14-24,63-71,75-82,86-106 1ifq d1ifqb_ B:3-11,12-20,58-67,68-77,80-100 1ifq d1ifqa_ A:3-11,12-20,58-67,68-77,80-100 8. e.62.1 Heme iron utilization protein-like Heme iron utilization protein-like 2 domains; d1 - 3-helical bundle similar to the homeodomain-like fold; d2 - 6-stranded beta-barrel capped by two helices at one end, similar topology to the PH-like fold 2j0r d2j0ra1 A:241-250,251-259,298-309,311-320,328-339 2j0p d2j0pa1 A:242-250,251-259,298-309,311-320,328-339 1u9t d1u9ta1 A:239-247,248-256,295-306,308-317,325-337 2hq2 d2hq2a1 A:239-247,248-256,295-306,308-317,325-336 2hqv d2hqva1 A:83-92,93-101,141-152,154-162,171-186 2hq2 d2hq2a1 A:61-69,70-78,118-129,131-139,144-156 2j0r d2j0ra1 A:63-71,72-80,120-131,133-141,146-158 2j0p d2j0pa1 A:62-71,72-80,120-131,133-141,146-158 9. d.110.1 Profilin (actin-binding protein) alpha-beta(2)-alpha-beta(5)-alpha ! Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha 1hlu d1hlup_ P:15-25,27-34,97-106,107-115,119-138 1pne d1pnea_ A:15-25,27-34,97-106,107-115,119-138 1fil d1fila_ A:15-25,27-34,97-106,107-115,119-138 1fik d1fika_ A:15-25,27-34,97-106,107-115,119-138 1cjf d1cjfb_ B:15-25,27-34,97-106,107-115,119-138 2pav d2pavp1 P:15-25,27-34,97-106,107-115,119-138 1cf0 d1cf0b_ B:15-25,27-34,97-106,107-115,119-138 1cf0 d1cf0a_ A:15-25,27-34,98-106,107-115,119-138 2btf d2btfp_ P:15-25,27-34,97-106,107-115,119-138 1awi d1awia_ A:15-25,27-34,98-106,107-115,119-138 3chw d3chwp1 P:15-25,27-34,97-106,107-115,119-138 1awi d1awib_ B:15-25,27-34,97-106,107-115,119-138 2pbd d2pbdp1 P:15-25,27-34,97-106,107-115,119-138 1ypr d1yprb_ B:15-23,27-33,83-92,93-102,105-124 1k0k d1k0ka_ A:15-23,27-33,83-92,93-102,105-124 1ypr d1ypra_ A:15-23,27-33,83-92,93-102,105-124 1cjf d1cjfa_ A:15-25,27-34,94-106,107-115,119-138 1cqa d1cqaa_ A:23-30,32-38,91-100,101-110,113-132 1f2k d1f2ka_ A:1017-1024,1026-1032,1083-1092,1093-1102,1105-1124 2acg d2acga_ A:16-24,26-32,83-92,93-102,105-124 1d1j d1d1jd_ D:15-25,27-34,94-106,107-115,119-138 1d1j d1d1jc_ C:15-25,27-34,94-106,107-115,119-137 1g5u d1g5ua_ A:1021-1028,1030-1036,1089-1098,1099-1108,1111-1130 1g5u d1g5ub_ B:2021-2028,2030-2036,2089-2098,2099-2108,2111-2130 3nul d3nula_ A:20-28,30-36,89-98,99-108,111-130 1a0k d1a0ka_ A:20-28,30-36,89-98,99-108,111-130 1pfl d1pfla_ A:17-25,27-34,94-106,107-115,119-138 2prf d2prfa_ A:17-22,28-33,83-92,93-102,105-121 13. d.110.9 GlcG-like alpha-beta(2)-alpha(3)-beta(2)-alpha; similar to the Roadblock/LC7 domain ! Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha 2a2l d2a2la1 A:36-43,45-53,107-114,115-125,127-145 2a2l d2a2lc1 C:36-43,45-53,107-114,115-125,127-146 2a2l d2a2ld1 D:36-43,45-53,107-114,115-125,127-146 2a2l d2a2lb1 B:36-43,45-53,107-114,115-125,127-146 25. g.41.6 Hypothetical protein MTH1184 contains two CXC motifs ! Rubredoxin-like metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2 1gh9 d1gh9a_ A:1-8,10-17,20-25,27-32,43-56