1. e.62.1 Heme iron utilization protein-like
Heme iron utilization protein-like 2 domains; d1 - 3-helical bundle similar to the homeodomain-like fold; d2 - 6-stranded beta-barrel capped by two helices at one end, similar topology to the PH-like fold
1u9t d1u9ta1 A:48-60,96-103,106-115,120-129,131-139
2j0p d2j0pa1 A:50-62,98-105,108-119,120-131,133-141
2j0r d2j0ra1 A:50-62,98-105,108-119,120-131,133-141
2hq2 d2hq2a1 A:222-237,273-279,284-294,295-306,308-317
2j0r d2j0ra1 A:225-240,276-283,287-297,298-309,311-320
1u9t d1u9ta1 A:222-237,273-280,283-294,295-306,308-317
2j0p d2j0pa1 A:225-240,276-283,287-297,298-309,311-320
2hq2 d2hq2a1 A:48-60,96-102,107-117,118-129,131-139
2. c.26.2 Adenine nucleotide alpha hydrolases-like share similar mode of ligand (Adenosine group) binding ! can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group !
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
1o96 d1o96e_ E:36-53,114-120,145-151,156-165,167-176
1o96 d1o96c_ C:36-53,114-120,145-151,156-164,168-176
1o96 d1o96a_ A:36-53,114-120,145-151,156-164,168-176
1o96 d1o96q_ Q:36-54,114-120,145-151,156-165,167-176
1efp d1efpb_ B:36-53,115-121,149-154,155-164,165-174
1o94 d1o94c_ C:36-54,114-120,145-151,156-165,167-176
3clu d3cluc1 C:36-54,114-120,145-151,156-164,168-176
1efv d1efvb_ B:39-56,118-124,152-157,158-167,168-177
1o97 d1o97c_ C:36-54,114-120,145-151,156-164,168-176
3cls d3clsc1 C:36-54,114-120,145-151,156-164,168-176
2a1u d2a1ub1 B:39-56,118-124,152-157,158-167,168-177
1o95 d1o95c_ C:36-54,114-120,145-151,156-165,167-176
1efp d1efpd_ D:36-53,115-121,149-154,155-164,165-174
1o94 d1o94e_ E:36-54,114-120,145-151,156-165,167-176
3clt d3cltc1 C:36-54,114-120,145-151,156-164,168-176
3clr d3clrc1 C:36-54,114-120,145-151,156-164,167-176
1o95 d1o95e_ E:36-54,114-120,145-151,156-165,167-176
1t9g d1t9gs_ S:39-56,118-124,152-157,158-167,168-177
2a1t d2a1ts1 S:39-56,118-124,152-157,158-167,168-177
1efv d1efvb_ B:39-56,145-149,152-157,158-167,168-177
2a1u d2a1ub1 B:39-56,145-149,152-157,158-167,168-177
3. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1gv4 d1gv4a2 A:266-273,300-306,367-375,376-383,385-391
4. d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase beta-alpha-beta(3); 2 layers: alpha/beta
1jie d1jieb_ B:215-228,245-253,291-297,303-311,314-321
1jif d1jifb_ B:215-228,245-253,291-300,303-311,314-320
1jif d1jifa_ A:15-28,45-53,91-100,103-111,114-121
1jie d1jiea_ A:15-28,45-53,91-100,103-111,114-121
1niq d1niqb_ B:13-25,42-50,88-96,102-109,112-119
1qto d1qtoa_ A:15-28,45-53,91-101,102-111,114-121
1xrk d1xrka_ A:15-28,45-53,91-101,102-111,114-121
1mh6 d1mh6b_ B:13-25,42-50,88-97,101-109,112-119
1mh6 d1mh6a_ A:213-225,242-250,288-297,301-309,312-319
1niq d1niqc_ C:13-25,42-50,88-97,101-109,112-119
1xrk d1xrkb_ B:15-28,45-53,91-101,102-111,114-121
1byl d1byla_ A:15-28,45-53,91-101,102-111,114-121
1ewj d1ewjh_ H:13-25,42-50,88-98,100-109,112-119
1ewj d1ewjb_ B:13-25,42-50,88-98,100-109,112-119
1ewj d1ewjd_ D:13-25,42-50,88-98,100-109,112-119
1ecs d1ecsa_ A:13-25,42-50,88-98,100-109,112-119
1ewj d1ewja_ A:13-25,42-50,88-98,100-109,112-119
1ecs d1ecsb_ B:213-225,242-250,288-298,300-309,312-319
5. c.52.1 Restriction endonuclease-like
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
2ot9 d2ot9a1 A:36-51,126-132,146-156,157-164,165-171
2g3w d2g3wb1 B:36-51,128-134,148-158,159-166,167-173
2g3w d2g3wa1 A:36-51,128-134,148-158,159-166,167-173
6. d.61.1 LigT-like
LigT-like duplication of beta-alpha-beta-alpha-beta motif: antiparallel beta sheet forms barrel (n=6, S=8) similar to the barrel of prokaryotic DNA topoisomerases I and III
2fsq d2fsqa1 A:51-68,81-85,130-138,139-146,177-185
7. d.17.4 NTF2-like has a beta-alpha(2)-beta insertion after the main helix !
Cystatin-like Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
1mwu d1mwub1 B:58-74,105-120,139-146,292-304,311-321
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 968 (enumeration index: query2138) of S5
2x8c A:266-273,287-293,350-361,362-375,377-385
2x8c B:266-273,288-293,350-361,362-375,377-385
3fm2 A:4-16,55-62,65-77,78-90,92-101
3fm2 B:4-16,55-62,65-75,80-90,92-101
3ic9 C:148-155,172-178,233-241,242-251,253-261
3ic9 D:148-155,172-178,233-241,242-251,253-261
3ic9 A:148-155,172-179,233-241,242-251,253-261
3ic9 B:148-155,172-178,233-241,242-251,253-261
1zx9 A:155-162,177-183,238-246,247-254,256-261
3ogv A:376-393,499-507,577-583,600-606,631-636
3c0u B:36-51,128-134,148-158,159-166,167-173
3c0u A:36-51,128-134,148-158,159-166,167-173
2j3n E:170-177,192-197,254-262,264-274,278-285
3iu2 B:165-180,187-192,210-218,219-236,237-251
2zhp A:15-28,45-53,91-101,102-111,114-121
3hw9 A:103-115,130-135,169-183,184-196,209-223
3hwb A:103-115,130-135,169-183,184-196,209-223
3iu1 B:165-180,187-192,210-218,219-236,237-251
3s61 A:175-182,208-214,316-326,327-337,338-347
3ean A:170-177,192-197,254-262,264-274,278-285
2ovi B:43-58,94-100,105-115,116-127,129-138
2ovi C:43-58,94-100,105-115,116-127,129-138
2ovi A:43-58,94-100,105-115,116-127,129-138
3jtk B:165-180,187-192,210-218,219-236,237-251
3ogr A:376-393,499-507,577-583,600-606,631-636
2ph0 A:44-59,95-101,105-116,117-128,130-139
2ph0 B:47-59,95-102,106-116,117-128,130-138
3o0e A:103-115,117-121,252-266,268-282,287-303
3o0e A:103-115,117-121,209-223,224-236,252-266
3ogs A:376-393,499-507,577-583,600-606,631-636
3na2 A:3-20,56-63,67-77,79-90,92-101
3na2 B:3-20,56-63,67-75,81-90,92-101
3na2 D:3-20,56-63,67-77,79-90,92-101
3na2 C:4-20,56-63,67-76,80-90,92-101
3og2 A:376-393,499-507,577-583,600-606,631-636
3s5w B:175-182,208-214,316-326,327-337,338-347