1. d.167.1 Peptide deformylase nickel-dependent enzyme !
Peptide deformylase alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
1s17 d1s17b_ B:69-75,75-81,106-115,117-126,125-141
1xen d1xena1 A:69-74,74-82,104-113,115-123,123-139
1xem d1xema1 A:69-74,74-82,104-113,115-123,123-139
1lm6 d1lm6a_ A:104-111,111-124,145-154,156-164,164-180
2ai9 d2ai9a1 A:83-91,91-104,125-134,136-145,144-160
1q1y d1q1ya_ A:84-92,92-105,126-135,137-146,145-161
2ai9 d2ai9b1 B:83-91,91-104,125-134,136-145,144-160
1lmh d1lmha_ A:83-92,92-105,126-135,137-146,145-161
1dff d1dffa_ A:69-74,74-85,104-113,115-124,123-139
1lqy d1lqya_ A:82-91,91-105,125-134,136-145,144-160
2. d.18.1 ssDNA-binding transcriptional regulator domain
ssDNA-binding transcriptional regulator domain helix-swapped dimer of beta(4)-alpha motifs
2it9 d2it9d1 D:8-14,73-82,83-92,100-107,106-122
2nvn d2nvna1 A:10-17,75-84,85-94,98-105,104-119
2it9 d2it9b1 B:8-14,73-82,83-95,97-108,107-120
3. b.55.1 PH domain-like
PH domain-like barrel barrel, partly opened; n*=6, S*=12; meander; capped by an alpha-helix
3dcx d3dcxe1 E:41-48,73-81,88-96,101-107,111-124
3dcx d3dcxb1 B:41-48,73-83,87-96,101-107,111-124
3dcx d3dcxc1 C:41-48,73-83,88-96,101-107,111-124
3dcx d3dcxa1 A:41-48,73-83,87-96,101-107,111-124
3dcx d3dcxd1 D:41-48,73-83,87-96,101-108,111-124
1aqc d1aqcb_ B:386-393,415-423,424-432,457-465,467-491
3b77 d3b77e1 E:49-56,83-92,97-106,107-116,118-158
4. e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit !
beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization
2ppb d2ppbd1 D:1272-1277,1276-1284,1289-1297,1298-1306,1331-1340
2o5i d2o5id1 D:1272-1277,1276-1284,1289-1297,1298-1306,1331-1340
5. b.55.2 PA2021-like prokaryotiic proteins of PH domain-like fold lacking the N-terminal strand !
PH domain-like barrel barrel, partly opened; n*=6, S*=12; meander; capped by an alpha-helix
1ywy d1ywya1 A:23-30,50-57,58-66,67-71,73-84
6. d.136.1 Phospholipase D/nuclease
Phospholipase D/nuclease beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234
1xdo d1xdoa4 A:340-346,593-601,602-610,623-628,630-647
1xdo d1xdob4 B:340-346,593-601,602-610,621-628,630-647
7. b.36.1 PDZ domain-like peptide-binding domain !
PDZ domain-like contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix
2i0i d2i0ic1 C:464-470,476-482,487-494,507-511,523-535
2i0i d2i0ia1 A:464-470,476-482,487-494,507-511,523-534
2i0i d2i0ib1 B:464-470,476-482,487-494,507-511,523-535
8. b.40.2 Bacterial enterotoxins
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
4ull d4ulla_ A:3-7,9-16,19-24,27-32,35-47
9. d.3.1 Cysteine proteinases the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet !
Cysteine proteinases consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
1kfu d1kful3 L:254-258,260-275,276-286,322-328,327-334
10. b.68.1 Sialidases
6-bladed beta-propeller consists of six 4-stranded beta-sheet motifs; meander
1w0o d1w0oa3 A:151-163,740-747,749-758,760-768,768-777
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 421 (enumeration index: query2154) of S5
2z8r B:165-175,218-222,228-236,266-274,581-593
3au4 A:1969-1977,1999-2006,2008-2015,2016-2023,2025-2046
1zyi A:44-50,71-75,85-93,115-124,125-142
2os0 A:88-94,94-109,129-138,140-149,148-164
3hsa D:42-48,76-82,88-94,101-107,111-119
3hsa C:41-46,76-83,87-94,101-107,111-119
3hsa E:42-48,76-83,87-94,101-106,111-125
3hsa A:42-46,76-83,87-94,101-106,111-119
3hsa B:42-48,76-81,88-94,101-107,111-119
3snh A:541-547,569-575,584-591,602-607,609-624
2ys3 A:31-37,62-71,72-84,85-94,96-113
2os1 A:88-94,94-109,129-138,140-149,148-164
3f5r A:16-23,51-60,63-71,74-80,82-98
3bs1 A:202-207,209-216,217-223,225-230,231-238
3pvl A:1487-1495,1515-1526,1527-1537,1539-1546,1548-1567
3odw B:666-672,712-718,723-730,736-742,744-763
3odw B:706-710,712-718,723-730,736-742,744-763
3fss A:89-98,122-131,137-145,155-161,181-197
3a8n A:491-497,499-506,513-520,522-529,531-555
3a8n A:465-471,499-506,513-520,522-529,531-555
3g6n A:88-94,94-109,129-138,140-149,148-164
3g6n B:88-94,94-109,129-138,140-149,148-164
3n1k A:67-83,150-160,165-176,177-188,188-208
3m6o A:66-74,74-83,105-114,116-125,124-140
3pn2 A:66-74,74-83,105-114,116-125,124-140
3m6r B:67-74,74-82,105-114,116-125,124-140
3m6r D:67-74,74-82,104-114,116-124,124-140
2y8f C:356-364,396-401,403-411,416-424,425-447
1vey B:76-84,84-90,115-124,126-135,134-150
1vey A:76-84,84-90,115-124,126-135,134-150
1sv2 B:76-84,84-90,115-124,126-135,134-150
1sv2 A:76-84,84-90,115-124,126-135,134-150
3hsi A:25-29,362-368,370-375,386-397,399-416
2vsz A:573-580,612-619,641-647,649-655,658-673
2vsz B:573-580,612-619,640-647,649-656,658-675
3au5 B:1969-1977,1999-2006,2008-2014,2018-2023,2025-2048
3g1j A:30-36,40-49,50-60,61-70,71-82
3pn5 A:66-74,74-83,105-114,116-124,124-140
3r9y A:67-82,150-160,165-176,177-188,188-208
1ws0 A:68-74,74-85,104-113,115-124,123-139
1ws1 A:69-74,74-82,104-113,115-124,123-139
3cmd B:88-94,94-109,129-138,140-149,148-164
3cmd A:89-94,94-109,129-138,140-149,148-164
3a98 B:606-610,612-619,640-647,649-656,658-674
3a98 B:573-580,612-619,640-647,649-656,658-674
3a98 D:574-580,613-619,641-647,649-655,658-674
3a98 D:606-610,613-619,641-647,649-655,658-674
3n1i A:67-83,150-160,165-176,177-188,188-208
3gyo A:30-39,63-72,78-86,96-102,122-138
3d6w B:169-174,176-184,186-193,195-202,201-213
3d6w A:169-174,176-183,186-193,195-202,201-213
3k44 A:53-64,130-141,142-153,158-165,164-184
3k44 C:53-64,130-141,142-153,158-165,164-184
3pn3 B:66-74,74-83,105-114,116-125,124-140
3pn3 A:66-74,74-83,105-114,116-125,124-140
3n1l A:67-83,150-160,165-176,177-188,188-208
3g5k B:89-97,97-104,128-137,139-148,147-163
2zuy A:132-142,185-189,195-203,233-241,565-577
3g5p B:89-97,97-104,128-137,139-148,147-163
3gyp A:30-39,63-72,78-87,92-102,122-138
3ra0 A:67-83,150-160,165-176,177-188,188-208
2z8s A:165-175,218-222,228-236,266-274,581-593
3r9z A:67-83,151-160,165-176,177-188,188-208
3n1h A:67-83,150-160,165-176,177-188,188-208