1. b.3.3 VHL
Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
1lm8 d1lm8v_ V:70-80,82-91,93-103,104-114,146-153
1vcb d1vcbi_ I:70-79,82-91,93-103,104-113,146-153
1vcb d1vcbl_ L:70-79,82-91,93-103,104-113,146-153
1vcb d1vcbc_ C:70-79,82-91,93-103,104-113,146-153
1vcb d1vcbf_ F:70-79,82-91,93-103,104-113,146-153
1lqb d1lqbc_ C:70-80,83-91,93-102,103-114,146-153
2. b.25.1 Osmotin, thaumatin-like protein has two smaller insertion domains !
Osmotin, thaumatin-like protein sandwich; 11 strands in 2 sheets
1aun d1auna_ A:2-10,13-20,21-28,29-37,198-205
1pcv d1pcvb_ B:1-8,11-19,20-28,30-36,197-204
1pcv d1pcva_ A:1-8,11-19,20-28,30-36,197-204
2d8p d2d8pa1 A:1-9,13-19,27-31,33-41,197-204
1ly0 d1ly0a_ A:1-9,12-19,27-32,33-41,197-204
2a7i d2a7ix1 X:1-9,12-19,27-32,33-41,197-204
1lr2 d1lr2a_ A:1-9,12-19,27-32,33-41,197-204
1rqw d1rqwa_ A:1-9,12-19,27-32,33-41,197-204
1lr3 d1lr3a_ A:1-9,12-19,27-32,33-41,197-204
2d8o d2d8oa1 A:1-9,12-19,27-32,33-41,197-204
2g4y d2g4ya1 A:1-9,12-19,27-32,33-41,197-204
2pe7 d2pe7a1 A:1-9,12-19,27-32,33-41,197-204
2blu d2blua1 A:1-9,12-19,27-32,33-41,197-204
2blr d2blra1 A:1-9,12-19,27-32,33-41,197-204
1lxz d1lxza_ A:1-9,12-19,27-32,33-41,197-204
2oqn d2oqna1 A:1-9,12-19,27-32,33-41,197-204
1kwn d1kwna_ A:1-9,12-19,27-32,33-41,197-204
1pp3 d1pp3a_ A:1-9,12-19,27-32,33-41,197-204
1thv d1thva_ A:1-9,12-19,27-32,33-41,197-204
1thw d1thwa_ A:1-9,12-19,27-32,33-41,197-204
1thu d1thua_ A:1-9,12-19,27-32,33-41,197-204
1pp3 d1pp3b_ B:1-9,12-19,27-32,33-41,197-204
1du5 d1du5b_ B:1-8,11-18,22-28,29-36,198-205
1du5 d1du5a_ A:1-8,11-18,22-28,29-36,197-205
3. b.3.1 Starch-binding domain-like
Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
1nkg d1nkga1 A:257-267,272-279,283-288,292-300,326-335
1acz d1acza_ A:513-523,528-534,548-552,561-571,607-615
4. b.3.6 Aromatic compound dioxygenase
Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
1dlm d1dlma_ A:132-143,149-157,178-185,188-196,282-293
1dlq d1dlqa_ A:132-143,149-157,178-185,188-196,282-293
1dlt d1dlta_ A:132-143,149-157,178-185,188-196,282-293
1dlq d1dlqb_ B:132-143,149-157,178-185,188-196,282-293
1dlt d1dltb_ B:132-143,149-157,178-185,188-196,282-293
1dlm d1dlmb_ B:132-143,149-157,178-185,188-196,282-293
1dmh d1dmhb_ B:132-143,149-157,178-185,188-196,282-293
1dmh d1dmha_ A:132-143,151-157,178-185,188-196,282-293
3pcd d3pcdm_ M:376-387,393-401,425-432,435-443,517-528
1ykl d1ykll1 L:376-387,395-401,425-431,435-443,517-528
1ykl d1yklf1 F:376-387,393-401,425-434,436-443,517-528
3pcg d3pcgq_ Q:376-387,393-401,425-434,436-443,517-528
3pcl d3pclm_ M:376-387,393-401,425-434,436-443,517-528
3pcb d3pcbq_ Q:376-387,393-401,425-434,436-443,517-528
3pci d3pciq_ Q:376-387,393-401,425-434,436-443,517-528
1ykn d1yknj1 J:376-387,393-401,425-434,436-443,517-528
3pcc d3pccq_ Q:376-387,393-401,425-434,436-443,517-528
3pcl d3pclq_ Q:376-387,393-401,425-434,436-443,517-528
1ykl d1ykld1 D:376-387,393-401,425-434,436-443,517-529
3pcj d3pcjq_ Q:376-387,393-401,425-434,436-443,517-529
3pcg d3pcgo_ O:376-387,393-401,425-434,436-443,517-529
3pca d3pcaq_ Q:376-387,393-401,425-434,436-443,517-529
3pcm d3pcmq_ Q:376-387,393-401,425-434,436-443,517-529
1s9a d1s9ab_ B:102-113,120-127,147-153,157-165,242-254
5. b.3.7 Hypothetical protein PA1324
Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
1xpn d1xpna_ A:41-51,63-72,108-115,117-123,163-169
6. c.41.1 Subtilisin-like
Subtilisin-like 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 2314567; left-handed crossover connection between strands 2 & 3
1r6v d1r6va_ A:456-465,472-480,485-491,494-500,556-563
7. b.3.5 Cna protein B-type domain
Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
1d2p d1d2pa2 A:625-637,648-656,662-667,672-681,711-719
1d2o d1d2ob2 B:625-637,648-656,662-667,672-681,710-720
1d2o d1d2oa2 A:625-637,648-656,662-667,672-681,710-720
1d2p d1d2pa4 A:812-824,835-843,849-854,859-868,897-907
1d2o d1d2ob1 B:535-547,558-566,567-576,581-590,616-623
1d2o d1d2oa1 A:535-547,558-566,567-576,581-590,616-623
1d2p d1d2pa3 A:722-734,745-753,754-763,768-777,803-810
1d2p d1d2pa1 A:535-547,558-566,567-576,581-590,616-623
8. b.3.2 Carboxypeptidase regulatory domain-like
Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
1qmu d1qmua1 A:304-314,320-327,332-336,339-344,372-381
1h8l d1h8la1 A:304-314,320-327,332-336,339-344,372-381
9. b.121.1 PHM/PNGase F members of this superfamily bind peptide substrates ! duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits !
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1yjl d1yjla2 A:199-209,220-230,286-296,314-325,330-335
1yi9 d1yi9a2 A:199-209,219-230,286-297,314-325,330-335
1yjk d1yjka2 A:199-209,219-230,286-300,313-325,330-335
1phm d1phma2 A:199-209,217-230,286-298,313-325,330-335
1opm d1opma2 A:199-209,217-230,286-298,313-325,330-335
3phm d3phma2 A:199-209,217-230,286-298,313-325,330-335
1sdw d1sdwa2 A:199-209,217-230,286-298,313-325,330-335
1yip d1yipa2 A:199-209,217-230,286-300,312-325,330-335
10. b.97.1 Cytolysin/lectin some topological similarity to osmotin !
Cytolysin/lectin sandwich, 10 strands in 2 sheets;
1gwy d1gwyb_ B:29-39,41-53,61-65,66-75,165-175
1o72 d1o72a_ A:29-39,41-52,61-65,66-75,165-175
1gwy d1gwya_ A:29-39,41-53,61-65,66-75,165-175
1o71 d1o71a_ A:29-39,41-53,61-65,66-75,165-175
1o71 d1o71b_ B:29-39,41-53,61-65,66-75,165-175
1o72 d1o72b_ B:29-39,41-53,61-65,66-75,165-175
1iaz d1iazb_ B:31-40,43-55,63-67,68-77,168-179
1iaz d1iaza_ A:31-41,43-55,63-67,68-77,168-178
1tzq d1tzqa_ A:31-41,43-55,63-67,68-77,168-178
11. b.92.1 Composite domain of metallo-dependent hydrolases this domain is interrupted by the catalytic beta/alpha barrel domain !
Composite domain of metallo-dependent hydrolases pseudobarrel; mixed sheet of 7 strand folded upon itself and "buckled" by two beta-turns
2p50 d2p50a1 A:1-6,7-12,13-17,18-25,42-46
1poj d1pojb1 B:8-14,14-19,21-25,25-32,50-54
1poj d1poja1 A:8-14,14-19,21-25,25-32,50-54
2gok d2goka1 A:17-23,24-29,36-40,41-48,68-73
1ymy d1ymya1 A:1-6,7-12,13-17,18-25,42-46
1ymy d1ymyb1 B:1-6,7-12,13-17,18-25,42-46
2p53 d2p53a1 A:1-6,7-12,13-17,18-25,42-46
2puz d2puza1 A:17-23,24-29,36-40,41-48,68-73
2gok d2gokb1 B:17-23,24-29,36-40,41-48,68-73
2puz d2puzb1 B:17-23,24-29,36-40,41-48,68-73
12. f.9.1 Perfringolysin
Perfringolysin 2 domains: (1) alpha+beta; (2) all-beta, similar to the CalB domain fold but the two last strands are transposed
1m3j d1m3jb_ B:392-402,403-417,431-436,437-445,480-490
1m3j d1m3ja_ A:392-402,403-417,431-436,437-445,480-490
1pfo d1pfoa_ A:392-402,403-417,431-436,437-445,480-490
1m3i d1m3ic_ C:390-402,403-417,419-428,437-447,480-490
1m3j d1m3jb_ B:392-402,403-417,419-428,437-445,480-490
1m3j d1m3ja_ A:392-402,403-417,419-428,437-445,480-490
1m3i d1m3ia_ A:391-402,403-417,419-428,437-446,480-490
1m3i d1m3ib_ B:392-402,403-417,419-428,437-445,480-490
1m3i d1m3id_ D:392-402,403-417,419-428,437-445,480-490
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 302 (enumeration index: query2251) of S5
3is0 X:695-705,720-729,731-740,743-751,800-809
3njv A:257-267,272-279,283-288,292-300,326-335
3gld A:30-41,48-59,77-85,92-100,164-171
3gld B:30-41,48-59,77-85,92-100,164-171
3gld C:30-41,48-59,77-85,92-100,164-171
3gld C:172-184,191-199,232-238,241-249,296-306
3gld A:172-184,191-199,232-238,241-249,296-306
3gld B:172-184,191-199,232-238,239-249,296-306
2wbz A:1-9,12-19,27-32,33-41,197-204
3qec A:41-51,63-72,108-114,117-123,165-169
3i51 A:131-141,148-155,174-180,184-191,267-277
2xtl B:349-360,369-382,383-395,398-405,431-440
2xtl A:456-466,472-482,566-571,573-581,630-637
2xtl A:349-360,369-382,383-395,398-405,431-440
2xtl B:456-466,472-482,566-571,573-581,630-637
3g7m A:2-8,11-20,25-32,33-39,143-150
3e3s A:1-9,12-19,27-32,33-41,197-204
3mll A:199-209,217-230,286-298,313-325,330-335
3njx A:257-267,272-279,283-288,292-300,326-335
2vu7 A:1-9,12-19,27-32,33-41,197-204
2bk1 A:391-402,403-417,431-436,437-446,480-490
3p0d F:157-167,180-187,191-196,199-207,244-248
2x9y A:447-456,462-471,554-558,561-567,617-623
2x9y A:343-354,363-373,374-385,388-394,422-431
3hkp A:130-141,148-155,174-180,184-192,267-277
3ls9 B:1-9,8-14,16-22,21-29,45-52
3ls9 A:1-9,8-14,16-22,21-29,45-52
2vhk A:1-9,12-19,27-32,33-41,197-204
2y1v A:35-45,78-86,118-124,126-131,176-188
2y1v A:343-354,363-373,374-385,388-394,422-432
2y1v A:447-456,462-471,554-558,561-567,617-623
2y1v C:343-354,363-373,374-385,388-394,422-431
2y1v C:35-45,78-86,118-124,126-131,176-188
2y1v B:35-45,78-86,118-124,126-131,176-188
2y1v B:447-456,462-471,554-558,561-567,617-623
2y1v C:447-456,462-471,554-559,561-567,617-623
2y1v B:343-354,363-373,374-385,388-394,422-431
3dzr A:1-9,12-19,27-32,33-41,197-204
3irz A:694-705,720-729,731-740,743-752,801-809
3o6r B:102-113,121-127,147-153,157-165,242-254
3o6r A:102-113,121-127,147-153,157-165,242-255
2x9x A:447-455,462-471,554-558,561-567,617-623
2x9x A:343-354,363-373,374-385,388-394,422-431
3klq B:4-15,22-32,33-44,45-56,113-120
3klq A:4-15,22-32,33-44,45-51,113-120
3hvn A:389-399,400-414,428-433,434-442,476-486
3qva B:1-12,18-27,28-37,40-45,89-99
3qva A:2-12,18-27,28-37,40-44,89-99
3qva C:1-12,18-27,28-37,40-44,89-99
3qva D:2-12,18-27,28-37,40-44,89-99
3gle A:30-41,48-59,77-85,92-100,164-171
3gle B:172-183,191-199,232-238,240-249,296-305
3gle C:30-41,48-59,77-85,92-100,164-171
3gle B:30-41,48-59,77-85,92-100,164-171
3gle A:172-184,191-199,232-238,239-249,296-306
3gle C:172-184,191-199,232-238,239-249,295-306
2azq A:130-141,147-155,174-181,184-192,278-290
3o32 B:102-113,121-127,147-153,157-165,242-254
3is1 X:695-705,720-729,731-740,743-751,799-809
2yjl B:26-35,42-54,55-68,71-79,115-120
2yjl A:26-35,40-54,55-69,71-79,115-120
2yjl C:26-35,42-54,55-68,71-79,115-120
3mif A:199-209,217-230,286-298,313-325,330-335
1z3q A:1-9,12-18,20-26,27-35,192-199
2zyh A:356-361,376-382,383-387,399-405,463-470
2zyh B:356-361,376-382,383-387,399-405,463-470
3mih A:199-209,217-230,286-298,313-325,330-335
3n02 A:1-9,12-19,27-32,33-41,197-204
2xsr A:129-140,148-154,173-179,183-191,277-287
2xid B:290-300,308-316,324-330,333-339,587-596
2x9w A:343-354,363-373,374-385,388-394,422-431
2x9w A:447-456,462-471,554-558,561-567,617-623
2bk2 A:391-402,403-417,431-436,437-446,480-490
2xhn B:257-267,272-279,283-288,292-300,326-335
2xhn A:257-267,272-279,283-288,292-300,326-335
3o5u B:102-113,120-127,147-153,157-165,242-254
2vi4 A:1-9,12-19,27-32,33-41,197-204
3hhy A:130-141,148-155,174-180,184-192,267-277
3qy5 A:1-9,12-19,27-32,33-41,197-204
3n03 A:1-9,12-19,27-32,33-41,197-204
3e0a A:1-9,12-19,27-32,33-41,197-204
2vi1 A:1-9,12-19,27-32,33-41,198-204
3mib A:199-209,217-230,286-298,313-325,330-335
3rpk A:447-456,462-471,554-558,561-567,617-623
3rpk B:447-456,462-471,554-558,561-567,617-623
3rpk A:343-354,363-373,374-385,388-394,422-431
3rpk B:343-354,363-373,374-385,388-394,422-431
2vu6 A:1-9,12-19,27-32,33-41,198-204
3iv8 B:1-6,7-12,13-17,18-25,42-46
3iv8 D:1-6,7-12,13-17,18-25,42-46
3iv8 A:1-6,7-12,13-17,18-25,42-46
3lsb A:1-9,8-14,16-22,21-29,45-52
3lsb B:1-9,8-14,16-22,21-29,45-52
3ald A:1-9,12-19,27-32,33-41,197-204
3mig A:199-209,217-230,286-298,313-325,330-335
3aok A:1-9,12-19,27-32,33-41,197-204
3sy6 B:155-168,177-187,214-223,227-236,271-281
3sy6 A:158-168,177-187,214-223,227-236,271-281
3mic A:199-209,217-230,286-298,313-325,330-335
3lim E:31-41,43-55,63-67,68-77,168-178
3lim B:31-41,43-55,63-67,68-77,168-178
3lim F:31-41,43-55,63-67,68-77,168-178
3lim A:31-41,43-55,63-67,68-77,168-178
3lim D:31-41,43-55,63-67,68-77,168-178
3lim C:31-41,43-55,63-67,68-77,168-178
3mie A:199-209,217-230,286-298,313-325,330-335
2l4o A:35-41,78-86,118-123,126-131,178-182
3pf2 A:380-390,397-406,437-442,445-453,510-516
3hjs A:130-141,148-155,174-180,184-192,267-277
3dzp A:1-9,12-19,27-32,33-41,197-204
3hpa B:29-38,37-43,45-51,50-58,75-82
3hpa A:29-38,37-43,45-51,50-58,75-82
2zyi A:356-361,376-382,383-387,399-405,463-470
2zyi B:356-361,376-382,383-387,399-405,463-470
2zyi B:243-254,261-271,280-287,288-296,322-332
3cqf A:404-415,416-430,432-441,450-459,493-503
3cqf B:404-415,416-430,432-441,450-459,493-503
3b2m A:30-41,48-59,77-85,92-100,164-171
3b2m B:30-41,48-59,77-85,92-100,164-171
3b2m C:172-184,191-199,232-238,241-249,296-306
3b2m A:172-184,191-199,232-238,239-249,296-306
3b2m C:30-41,48-59,77-85,92-100,164-171
3b2m B:172-184,191-199,232-238,241-249,296-306
2x9z A:343-354,363-372,375-385,388-394,422-431
3i4v A:130-141,149-155,174-180,184-192,267-277
3lsc B:1-9,8-14,16-22,21-29,45-52
3lsc A:1-9,8-14,16-22,21-29,45-52
1yhp A:97-107,114-122,126-131,135-141,203-210
2nsm A:320-329,335-342,347-351,354-359,387-396
2b1o A:97-107,114-122,126-131,135-141,203-210
3htl X:54-64,87-95,125-134,137-145,183-194
3pay B:32-41,54-63,65-75,82-87,162-169
3pay D:32-41,54-63,65-75,82-87,162-169
3pay A:32-41,54-63,65-75,82-87,162-169
3pay C:32-41,54-63,65-75,82-87,162-169
2i0w A:1-9,12-19,21-27,28-36,197-204
3mn8 C:336-346,352-359,365-369,372-378,408-416
3mn8 A:336-346,352-359,365-369,372-378,408-416
3mn8 B:336-346,352-359,365-369,372-378,408-416
3mn8 D:336-346,352-359,365-369,372-378,408-416
3dzn A:1-9,12-19,27-32,33-41,197-204
2xsv A:129-140,148-154,173-179,183-191,277-287
3hgi A:130-141,148-155,174-180,184-192,267-277
2zyr A:243-254,261-271,280-287,288-296,322-332
2zyr A:356-361,376-382,383-387,399-405,463-470
2zyr B:356-361,376-382,383-387,399-404,463-470
2zyr B:243-254,261-271,280-287,288-296,322-332
3hhx A:130-141,148-155,174-180,184-192,267-277
3pg2 B:380-390,397-406,437-442,445-453,510-516
3pg2 A:380-390,397-406,437-442,445-453,510-516
2xsu A:129-140,148-154,173-179,183-191,277-287
3o6j B:102-113,121-127,147-153,157-165,242-254
3al7 A:1-9,12-19,27-32,33-41,197-204
1tmx B:132-143,149-157,175-182,185-193,280-291
1tmx A:132-143,149-157,175-182,185-193,279-291
3qdh A:347-364,377-387,410-414,417-429,480-484
2boy B:101-112,118-126,145-152,155-163,240-252
2boy H:101-112,118-126,145-152,155-163,242-252
2boy A:101-112,118-126,145-152,155-163,240-252
2boy G:101-112,118-126,145-152,155-163,241-252
2boy E:101-112,120-126,145-152,155-163,241-252
2boy D:101-112,118-126,145-152,155-163,240-252
2boy C:101-112,118-126,145-152,155-163,240-252
2boy F:101-112,118-126,145-152,155-163,242-252
2vhr A:1-9,12-19,27-32,33-41,197-204
3n9t A:128-139,145-153,172-179,182-190,275-287
3mlk A:199-209,217-230,286-298,313-325,330-335
3mlj A:199-209,217-230,286-298,313-325,330-335
3phs A:154-165,172-181,203-207,210-216,248-259
2ww8 A:735-746,751-762,778-785,787-795,848-855
3hjq A:130-141,148-155,174-180,184-192,267-277
3mi5 O:376-387,393-401,425-432,435-443,517-528
4a1r A:35-45,56-66,90-101,101-112,156-166
4a1r B:35-45,56-66,90-101,101-112,157-166
4a1r D:35-45,57-66,90-100,101-112,157-166
4a1r C:35-45,56-66,90-101,101-112,156-166
2vi3 A:1-9,12-19,27-32,33-41,197-204
3r4r B:34-45,68-76,78-87,99-112,182-187
3r4r A:33-44,68-76,78-87,99-113,182-187
2xic A:290-300,308-317,324-330,333-339,587-596
2xic B:290-300,308-316,324-330,333-339,587-596
2vi2 A:1-9,12-19,27-32,33-41,197-204
3kpt B:167-177,183-192,194-204,207-215,258-265
3kpt B:409-421,427-436,448-453,456-461,504-513
3kpt A:167-177,183-192,194-204,207-215,258-265
3kpt A:410-420,427-436,448-453,456-464,504-513
3egj A:1-6,7-12,13-17,18-25,42-46
3mid A:199-209,217-230,286-298,313-325,330-335
2xi9 B:291-300,308-317,324-330,333-338,587-598
2xi9 A:291-300,308-315,325-330,333-338,587-598
3hj8 A:130-141,148-155,174-180,184-192,267-277
2zys A:356-361,376-382,383-387,399-405,463-470
3i4y A:131-141,148-155,174-181,184-191,267-277