1. d.228.1 Replication modulator SeqA, C-terminal DNA-binding domain
Replication modulator SeqA, C-terminal DNA-binding domain consists of seven alpha-helices and three-stranded beta-sheet
1iu3 d1iu3c_ C:2-13,21-38,80-85,87-103,105-116
1iu3 d1iu3f_ F:2-13,21-38,80-85,87-103,105-116
1j3e d1j3ea_ A:2-13,21-38,80-85,87-103,105-116
1lrr d1lrrd_ D:64-78,86-103,145-150,152-168,170-181
1lrr d1lrra_ A:64-78,86-103,145-150,152-168,170-181
2. a.4.5 "Winged helix" DNA-binding domain contains a small beta-sheet (wing) !
DNA/RNA-binding 3-helical bundle core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
2nra d2nrac2 C:18-29,29-43,154-159,168-183,194-203
3. d.224.1 SufE/NifU iron-sulfur cluster assembly proteins !
SufE/NifU alpha(2)-beta(3)-alpha(3); 2 layers alpha/beta, 3-stranded antiparallel beta-sheet; order 123
1ni7 d1ni7a_ A:16-28,29-45,75-84,85-100,111-120
1mzg d1mzgb_ B:6-17,19-35,65-74,75-90,101-110
1mzg d1mzga_ A:6-18,19-34,66-74,75-90,101-110
4. c.52.1 Restriction endonuclease-like
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
1fiu d1fiud_ D:3-20,61-85,214-222,224-234,245-257
1fiu d1fiub_ B:3-20,61-85,214-222,224-234,245-257
1fiu d1fiua_ A:3-20,61-85,214-222,224-234,245-257
1fiu d1fiuc_ C:3-20,61-85,214-222,224-234,245-257
5. d.127.1 Creatinase/aminopeptidase
Creatinase/aminopeptidase duplication: composed of two very similar alpha+beta folds
1a16 d1a16a2 A:177-202,207-223,267-278,283-304,426-440
1wl9 d1wl9a2 A:177-202,207-223,267-278,283-304,426-440
1wl6 d1wl6a2 A:177-202,207-223,267-278,283-304,426-440
2bwv d2bwva2 A:177-202,207-223,267-278,283-304,426-440
2v3y d2v3ya2 A:177-202,207-223,267-278,283-304,426-440
2v3z d2v3za2 A:177-202,207-223,267-278,283-304,426-440
2bws d2bwsa2 A:177-202,207-223,267-278,283-304,426-440
2v3x d2v3xa2 A:177-202,207-223,267-278,283-304,426-440
1wlr d1wlra2 A:177-202,207-223,267-278,283-304,426-440
2bwx d2bwxa2 A:177-202,207-223,267-278,283-304,426-440
1m35 d1m35d2 D:177-202,207-223,267-278,283-305,426-440
1w2m d1w2md2 D:177-202,207-223,267-278,283-305,426-440
1m35 d1m35b2 B:177-202,207-223,267-278,283-304,426-440
6. a.119.1 Lipoxigenase
Lipoxigenase multihelical ! large nearly all-alpha domain
2p0m d2p0ma1 A:213-223,225-236,299-308,337-381,522-555
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1155 (enumeration index: query2261.2389) of S5
3kz4 C:1-19,27-42,56-61,74-102,375-397
3kz4 K:1-19,27-42,56-61,74-102,375-397
3kz4 J:1-19,27-42,56-61,74-102,375-397
3kz4 N:1-19,27-42,56-61,74-102,375-397
3kz4 E:1-19,27-44,56-61,74-102,375-397
3sqn B:91-104,107-116,138-143,152-165,201-219
3sqn A:91-104,107-116,138-144,152-168,201-219
3dtk A:9-29,33-42,44-50,72-93,104-126
3dtk A:9-29,33-42,62-69,72-93,104-126
3d3l A:212-222,224-235,298-307,336-380,537-554
2iw2 B:189-214,219-236,284-295,300-321,472-482
3fmt A:64-78,86-103,145-150,152-168,170-181
3fmt E:64-78,86-103,145-150,152-168,170-181
3fmt B:64-78,86-103,145-150,152-168,170-181
3fmt F:64-78,86-103,145-150,152-168,170-181
2e52 B:35-48,57-79,137-143,168-179,226-262
2e52 D:35-48,57-79,137-143,168-179,226-262
2e52 A:35-48,57-79,137-143,168-179,226-262
2e52 C:35-48,57-79,137-143,168-179,226-262
3gzu F:1-19,27-42,55-61,74-102,375-397
3gzu L:1-19,27-42,55-61,74-102,375-397
3gzu E:1-19,27-44,56-61,74-102,375-397
3gzu K:1-19,27-44,56-61,74-102,375-397
3gzu O:1-19,27-42,56-61,74-102,375-397
3gzu H:1-19,27-44,56-61,74-102,375-397
3gzu I:1-19,27-42,55-61,74-102,375-397
3gzu N:1-19,27-44,56-61,74-102,375-397
3gzu C:1-19,27-42,55-61,74-102,375-397
3n09 F:1-19,27-42,55-61,74-102,375-397
3n09 O:1-19,27-42,56-61,74-102,375-397
3n09 G:1-19,27-42,55-61,74-102,375-397
3n09 E:1-19,27-44,56-61,74-102,375-397
3n09 H:1-19,27-44,56-61,74-102,375-397
3n09 N:1-19,27-44,56-61,74-102,375-397
3n09 C:1-19,27-42,55-61,74-102,375-397
3n09 K:1-19,27-44,56-61,74-102,375-397
3n09 L:1-19,27-42,55-61,74-102,375-397
3n09 I:1-19,27-42,55-61,74-102,375-397
3o8y A:216-226,228-239,307-316,343-386,547-564
2okn B:189-214,219-236,284-295,300-321,472-482
3dte A:9-30,33-41,44-50,72-93,104-126
3dti A:9-30,33-42,62-68,72-93,104-126
3dti A:9-30,33-42,44-50,72-93,104-126
3a4k D:35-48,57-79,137-143,168-179,226-262
3a4k C:35-48,57-79,137-143,168-179,226-262
3a4k B:35-48,57-79,137-143,168-179,226-262
3a4k A:35-48,57-79,137-143,168-179,226-262