3. d.79.2 Tubulin C-terminal domain-like Bacillus chorismate mutase-like core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest 1tub d1tubb2 B:251-261,313-321,324-340,350-357,373-381 1tvk d1tvkb2 B:249-259,308-319,322-338,348-355,363-373 2btq d2btqa2 A:255-265,314-325,329-344,353-360,368-378 1rq2 d1rq2a2 A:207-216,255-264,268-283,287-296,302-311 1rlu d1rlua2 A:207-216,255-264,268-283,287-296,302-311 2hxh d2hxhb2 B:251-261,310-321,324-340,350-357,373-383 2hxf d2hxfb2 B:251-261,310-321,324-340,350-357,373-383 1jff d1jffb2 B:251-261,310-321,324-340,350-357,373-383 1tvk d1tvka2 A:251-261,310-321,324-339,350-358,373-382 2vaw d2vawa2 A:210-219,259-267,272-288,291-299,306-315 2bto d2btoa2 A:255-265,314-325,331-344,352-360,368-378 1sa1 d1sa1b2 B:251-261,310-321,324-340,350-357,373-383 2q1y d2q1ya2 A:207-216,255-264,268-283,287-296,301-311 1sa1 d1sa1d2 D:251-261,310-321,324-340,350-357,373-383 2q1x d2q1xa2 A:207-216,255-264,268-283,287-296,301-311 1rq7 d1rq7a2 A:207-216,255-263,268-283,287-295,301-311 2hxh d2hxha2 A:251-261,311-321,324-339,350-357,373-382 2hxf d2hxfa2 A:251-261,311-321,324-339,350-357,373-382 1jff d1jffa2 A:251-261,311-321,324-339,350-357,373-382 1sa0 d1sa0b2 B:251-261,310-321,324-340,350-357,373-383 1sa0 d1sa0d2 D:251-261,310-321,324-340,350-357,373-383 1tub d1tuba2 A:251-261,309-321,324-339,350-357,373-381 1z2b d1z2bb2 B:251-261,310-321,324-340,350-357,373-383 1z2b d1z2bd2 D:251-261,310-321,324-340,350-357,373-383 1rq2 d1rq2b2 B:207-216,255-264,268-284,287-296,302-313 1sa1 d1sa1c2 C:251-261,310-321,324-339,350-357,373-383 1sa0 d1sa0c2 C:251-261,310-321,324-339,350-357,373-383 1rlu d1rlub2 B:207-216,255-264,268-284,287-297,302-311 1z2b d1z2bc2 C:251-261,310-322,324-339,350-357,372-383 2bto d2btob2 B:255-265,314-326,329-344,352-360,367-378 2vap d2vapa2 A:235-246,283-292,296-312,315-324,330-339 2q1x d2q1xb2 B:207-216,255-264,268-284,287-296,301-311 1w5e d1w5eg2 G:235-246,283-292,296-312,315-323,330-339 1z2b d1z2ba2 A:251-261,310-321,324-339,348-357,373-383 1w5e d1w5eh2 H:235-246,283-292,296-312,315-323,330-339 1w5e d1w5ed2 D:235-246,283-292,296-312,315-323,330-339 1w5e d1w5ea2 A:235-246,283-292,296-312,315-323,330-339 1w5e d1w5ei2 I:235-246,283-292,296-312,315-323,330-339 1w5f d1w5fa2 A:218-231,270-279,283-299,302-311,317-328 1w5e d1w5ee2 E:235-246,283-292,296-312,315-323,330-339 1sa0 d1sa0a2 A:251-261,310-321,324-339,348-357,373-383 1w5e d1w5eb2 B:235-246,283-292,296-312,315-323,330-339 1w5e d1w5ec2 C:235-246,283-292,296-312,315-323,330-339 1w5e d1w5ef2 F:235-246,283-292,296-312,315-323,330-339 1sa1 d1sa1a2 A:251-261,310-321,324-339,348-357,373-383 1w5f d1w5fb2 B:218-231,270-279,283-298,302-311,317-328 1w5b d1w5ba2 A:235-246,283-292,296-312,315-324,330-339 2q1y d2q1yb2 B:207-216,255-264,268-284,287-297,301-311 1ofu d1ofua2 A:210-219,259-269,272-288,291-301,306-315 1fsz d1fsza2 A:235-246,283-292,296-311,315-324,330-339 1w5a d1w5aa2 A:235-246,283-292,296-312,315-324,330-339 1w5a d1w5ab2 B:235-246,283-292,296-312,315-324,330-339 1w59 d1w59a2 A:235-246,283-292,296-312,315-324,330-339 1w5b d1w5bb2 B:235-246,283-292,296-312,315-324,330-339 1ofu d1ofub2 B:210-219,259-269,272-288,291-301,305-315 1w59 d1w59b2 B:235-246,283-292,296-312,315-324,330-339 1rq7 d1rq7b2 B:207-216,255-264,268-284,287-297,301-313 1w58 d1w5812 1:235-246,283-292,296-312,315-324,330-339 1z2b d1z2ba2 A:223-240,310-321,324-339,348-357,373-383 1z2b d1z2bc2 C:223-240,310-322,324-339,350-357,372-383 1sa0 d1sa0c2 C:223-240,310-321,324-339,350-357,373-383 1sa1 d1sa1c2 C:223-240,310-321,324-339,350-357,373-383 1sa0 d1sa0a2 A:223-240,310-321,324-339,348-357,373-383 1z2b d1z2bb2 B:223-240,310-321,324-340,350-357,373-383 1sa1 d1sa1a2 A:223-240,310-321,324-339,348-357,373-383 1z2b d1z2bd2 D:223-240,310-321,324-340,350-357,373-383 1sa0 d1sa0b2 B:223-240,310-321,324-340,350-357,373-383 1sa0 d1sa0d2 D:223-240,310-321,324-340,350-357,373-383 1w59 d1w59a2 A:203-228,283-292,296-312,315-324,330-339 1w5a d1w5aa2 A:203-228,283-292,296-312,315-324,330-339 1w5e d1w5ee2 E:203-228,283-292,296-312,315-323,330-339 1w5b d1w5ba2 A:203-228,283-292,296-312,315-324,330-339 1w5e d1w5eh2 H:203-228,283-292,296-312,315-323,330-339 1w5e d1w5eb2 B:203-228,283-292,296-312,315-323,330-339 1w5e d1w5ef2 F:203-228,283-292,296-312,315-323,330-339 1w5e d1w5ei2 I:203-228,283-292,296-312,315-323,330-339 1w5e d1w5ec2 C:203-228,283-292,296-312,315-323,330-339 1rq2 d1rq2a2 A:175-194,255-264,268-283,287-296,302-311 2vaw d2vawa2 A:178-197,259-267,272-288,291-299,306-315 2q1x d2q1xa2 A:175-194,255-264,268-283,287-296,301-311 1rq7 d1rq7a2 A:175-194,255-263,268-283,287-295,301-311 2q1y d2q1ya2 A:175-194,255-264,268-283,287-296,301-311 4. d.79.3 L30e-like Bacillus chorismate mutase-like core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest 1sds d1sdsa_ A:10-24,43-51,54-69,71-77,92-98 1sds d1sdsc_ C:10-24,43-51,54-69,71-77,92-98 1xbi d1xbia1 A:10-24,43-51,54-69,71-77,92-98 1ck2 d1ck2a_ A:6-21,39-46,49-64,65-71,87-95 1sds d1sdsb_ B:10-24,43-51,54-69,71-77,92-98 1x52 d1x52a1 A:15-36,54-61,69-87,88-93,108-114 2qi2 d2qi2a3 A:245-264,281-288,294-308,309-314,329-335 1cn7 d1cn7a_ A:5-21,39-46,49-64,65-71,87-95 2vgn d2vgnb3 B:277-294,313-320,328-346,347-352,367-373 2vgn d2vgna3 A:277-294,313-320,328-346,347-352,367-373 3ccr d3ccrf1 F:9-28,45-53,56-71,73-79,94-99 2ozb d2ozbd1 D:15-33,50-59,62-77,79-85,100-106 2ozb d2ozba1 A:15-33,50-59,62-77,79-85,100-106 3ccs d3ccsf1 F:9-28,45-53,56-71,73-79,94-99 3cce d3ccef1 F:9-28,44-53,56-71,73-79,94-100 3cma d3cmaf1 F:9-27,45-52,56-71,72-78,94-102 3cc4 d3cc4f1 F:9-28,45-53,56-71,73-79,94-99 2vgm d2vgma3 A:277-294,313-320,328-346,347-352,367-373 3ccm d3ccmf1 F:9-28,45-53,56-71,73-79,94-99 1e7k d1e7kb_ B:15-33,50-59,62-77,79-85,100-106 1e7k d1e7ka_ A:15-33,50-59,62-77,79-85,100-106 1pxw d1pxwb_ B:17-35,53-61,64-79,81-87,102-110 2czw d2czwa1 A:13-31,49-57,60-75,77-83,98-106 2aif d2aifa1 A:20-38,55-64,67-82,84-90,105-111 2ale d2alea1 A:13-31,48-57,60-75,77-83,98-104 3cd6 d3cd6f1 F:9-28,45-53,56-71,73-79,94-99 1zwz d1zwza1 A:15-33,50-59,62-77,79-85,100-106 1zwz d1zwzb1 B:15-33,50-59,62-77,79-85,100-106 2hvy d2hvyd1 D:13-31,49-57,60-75,77-83,98-106 2fc3 d2fc3a1 A:12-30,48-56,59-74,76-82,97-105 1ffk d1ffke_ E:9-27,45-53,56-71,73-79,94-102 1pxw d1pxwa_ A:17-35,53-61,64-79,81-87,102-110 3ccq d3ccqf1 F:9-28,45-53,56-71,73-79,94-100 1nmu d1nmub_ B:6-21,39-46,52-64,66-71,88-96 3ccj d3ccjf1 F:9-27,45-53,56-71,73-79,94-102 1go1 d1go1a_ A:2-15,33-38,42-57,59-63,81-87 3cme d3cmef1 F:9-28,45-53,56-71,72-79,94-100 2qa4 d2qa4f1 F:9-27,45-53,56-71,72-79,94-102 1nmu d1nmud_ D:6-21,39-46,49-64,65-71,88-96 1jj2 d1jj2f_ F:9-27,45-53,56-71,72-79,94-102 1nji d1njih_ H:9-27,45-53,56-71,72-79,94-102 1m1k d1m1kh_ H:9-27,45-53,56-71,72-79,94-102 1kqs d1kqsf_ F:9-27,45-53,56-71,72-79,94-102 1s72 d1s72f_ F:9-27,45-53,56-71,72-79,94-102 1kc8 d1kc8h_ H:9-27,45-53,56-71,72-79,94-102 1m90 d1m90h_ H:9-27,45-53,56-71,72-79,94-102 1qvf d1qvff_ F:9-27,45-53,56-71,72-79,94-102 1k73 d1k73h_ H:9-27,45-53,56-71,72-79,94-102 1kd1 d1kd1h_ H:9-27,45-53,56-71,72-79,94-102 1vqp d1vqpf1 F:9-27,45-53,56-71,72-79,94-102 1q82 d1q82h_ H:9-27,45-53,56-71,72-79,94-102 1n8r d1n8rh_ H:9-27,45-53,56-71,72-79,94-102 1k9m d1k9mh_ H:9-27,45-53,56-71,72-79,94-102 1w40 d1w40a1 A:2-14,32-39,42-57,58-64,81-89 1k8a d1k8ah_ H:9-27,45-53,56-71,72-79,94-102 1q81 d1q81h_ H:9-27,45-53,56-71,72-79,94-102 1vqo d1vqof1 F:9-27,45-53,56-71,72-79,94-102 1vql d1vqlf1 F:9-27,45-53,56-71,72-79,94-102 1q86 d1q86h_ H:9-27,45-53,56-71,72-79,94-102 1vqm d1vqmf1 F:9-27,45-53,56-71,73-79,94-102 1qvg d1qvgf_ F:9-27,45-53,56-71,72-79,94-102 1vq8 d1vq8f1 F:9-27,45-53,56-71,73-79,94-102 1q7y d1q7yh_ H:9-27,45-53,56-71,72-79,94-102 1w41 d1w41a1 A:2-14,32-39,42-57,58-64,81-89 1vqn d1vqnf1 F:9-27,45-53,56-71,72-79,94-102 1vq9 d1vq9f1 F:9-27,45-53,56-71,73-79,94-102 2otl d2otlf1 F:9-27,45-53,56-71,72-79,94-102 3ccv d3ccvf1 F:9-27,45-53,56-71,73-79,94-102 3ccl d3cclf1 F:9-27,45-53,56-71,73-79,94-102 3cpw d3cpwf1 F:9-27,45-53,56-71,72-79,94-102 1yi2 d1yi2f1 F:9-27,45-53,56-71,72-79,94-102 1vq4 d1vq4f1 F:9-27,45-53,56-71,72-79,94-102 1yjn d1yjnf1 F:9-27,45-53,56-71,72-79,94-102 1yjw d1yjwf1 F:9-27,45-53,56-71,72-79,94-102 1vqk d1vqkf1 F:9-27,45-53,56-71,73-79,94-102 1w42 d1w42a1 A:2-14,32-39,42-57,58-64,81-89 1yij d1yijf1 F:9-27,45-53,56-71,72-79,94-102 3ccu d3ccuf1 F:9-27,45-53,56-71,73-79,94-102 1vq7 d1vq7f1 F:9-27,45-53,56-71,73-79,94-102 1w3e d1w3ex1 X:2-14,32-39,42-57,58-64,81-89 2otj d2otjf1 F:9-27,45-53,56-71,73-79,94-102 3cc7 d3cc7f1 F:9-27,45-53,56-71,73-79,94-102 1yit d1yitf1 F:9-27,45-53,56-71,72-79,94-102 1vq5 d1vq5f1 F:9-27,45-53,56-71,73-79,94-102 1vq6 d1vq6f1 F:9-27,45-53,56-71,73-79,94-102 3cc2 d3cc2f1 F:9-27,45-53,56-71,72-79,94-102 1yhq d1yhqf1 F:9-27,45-53,56-71,72-79,94-102 2qex d2qexf1 F:9-27,45-53,56-71,72-79,94-102 1yj9 d1yj9f1 F:9-27,45-53,56-71,72-79,94-102 2jnb d2jnba1 A:15-33,52-57,62-71,79-83,100-105 1h7m d1h7ma_ A:2-14,32-40,42-57,58-66,81-89 1rlg d1rlga_ A:8-26,44-52,55-70,72-78,93-101 1rlg d1rlgb_ B:8-26,44-52,55-70,72-78,93-101 1dt9 d1dt9a2 A:277-297,317-324,373-382,388-393,408-413 1t0k d1t0kb_ B:9-21,39-47,49-64,65-73,88-96 1go0 d1go0a_ A:2-14,33-40,42-57,59-66,81-89 2bo1 d2bo1a1 A:2-14,32-39,42-57,59-64,81-89 1ipa d1ipaa2 A:8-20,46-54,58-68,74-80,95-102 7. c.133.1 RbsD-like RbsD-like 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 251634; strand 6 is antiparallel to the rest 1ogf d1ogfd_ D:8-18,20-29,97-108,108-115,121-128 1ogf d1ogfa_ A:8-18,20-28,97-108,108-115,121-128 1ogf d1ogfc_ C:8-18,20-28,97-108,108-115,121-128 1ogf d1ogfb_ B:8-18,20-28,97-108,108-115,121-128 1ogd d1ogdc_ C:8-18,20-28,97-108,108-115,121-128 1ogd d1ogdb_ B:8-18,20-28,97-108,108-115,121-128 1ogd d1ogdd_ D:8-18,20-28,97-108,108-115,121-128 1ogf d1ogfe_ E:8-18,20-28,97-108,108-115,121-128 1ogc d1ogca_ A:8-18,20-28,97-108,108-115,121-128 1ogd d1ogde_ E:8-18,20-28,97-108,108-115,121-128 1ogd d1ogda_ A:8-18,20-28,97-108,108-115,121-128 1ogc d1ogcd_ D:8-18,20-28,97-108,108-115,121-128 1ogc d1ogcb_ B:8-18,20-28,97-108,108-115,121-128 1ogc d1ogcc_ C:8-18,20-28,97-108,108-115,121-128 1oge d1ogea_ A:8-18,20-28,97-108,108-115,121-128 1ogc d1ogce_ E:8-18,20-28,97-108,108-115,121-128 1oge d1oged_ D:8-18,20-28,97-108,108-115,121-128 1oge d1ogee_ E:8-18,20-28,97-108,108-115,121-128 1oge d1ogec_ C:8-18,20-28,97-108,108-115,121-128 1oge d1ogeb_ B:8-18,20-28,97-108,108-115,121-128 2ob5 d2ob5a1 A:10-20,22-30,113-123,124-131,137-144 2ob5 d2ob5a1 A:10-20,22-30,34-42,124-131,137-144 9. d.183.1 Major capsid protein gp5 possibly related to the hypothetical protein PF0899 superfamily ( Major capsid protein gp5 unusual fold; contains PF0899-like core, decorated with additional structure 2frp d2frpb1 B:132-139,273-278,278-288,310-316,322-328 2fte d2fteb1 B:132-139,273-278,278-288,310-316,322-328 2fsy d2fsyb1 B:132-139,273-278,278-288,310-316,322-328 1ohg d1ohgf_ F:132-139,273-278,278-288,310-316,322-328 1ohg d1ohgb_ B:132-139,273-278,278-288,310-316,322-328 2ft1 d2ft1b1 B:132-139,273-278,278-288,310-316,322-328 2frp d2frpc1 C:132-139,273-278,278-288,310-316,322-328 2fte d2ftec1 C:132-139,273-278,278-288,310-316,322-328 2fsy d2fsyc1 C:132-139,273-278,278-288,310-316,322-328 1ohg d1ohge_ E:132-139,273-278,278-288,310-316,322-328 1ohg d1ohga_ A:132-139,273-278,278-288,310-316,322-328 2ft1 d2ft1c1 C:132-139,273-278,278-288,310-316,322-328 2fte d2ftea1 A:132-139,274-278,278-288,310-316,322-328 2frp d2frpa1 A:132-139,274-278,278-288,310-316,322-328 1ohg d1ohgc_ C:132-139,274-278,278-288,310-316,322-328 2fsy d2fsya1 A:132-139,274-278,278-288,310-316,322-328 1ohg d1ohgd_ D:132-139,274-278,278-288,310-316,322-328 2ft1 d2ft1a1 A:132-139,274-278,278-288,310-316,322-328 2fsy d2fsye1 E:132-139,274-278,278-288,310-316,322-328 2fte d2ftee1 E:132-139,274-278,278-288,310-316,322-328 2frp d2frpe1 E:132-139,274-278,278-288,310-316,322-328 2ft1 d2ft1d1 D:132-139,274-278,278-288,310-316,322-328 2ft1 d2ft1e1 E:132-139,274-278,278-288,310-316,322-328 2frp d2frpd1 D:132-139,274-278,278-288,310-316,322-328 2fsy d2fsyd1 D:132-139,274-278,278-288,310-316,322-328 2fte d2fted1 D:132-139,274-278,278-288,310-316,322-328 1ohg d1ohgg_ G:200-226,273-278,278-288,310-316,322-328 11. c.119.1 DAK1/DegV-like domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different ! DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest] 1un8 d1un8b4 B:61-69,253-262,265-279,284-292,301-310 1un8 d1un8a4 A:61-69,253-262,265-279,284-292,301-310 1pzx d1pzxa_ A:122-140,230-236,238-254,257-263,274-281 1mgp d1mgpa_ A:39-47,251-263,264-279,282-289,300-309 1pzx d1pzxb_ B:122-140,230-237,238-254,257-263,274-281 1vpv d1vpvb_ B:14-22,226-238,239-254,257-264,275-287 1vpv d1vpva_ A:14-22,226-238,239-254,257-264,275-287 1oi2 d1oi2b_ B:66-74,287-298,301-320,320-330,338-347 1oi2 d1oi2a_ A:66-74,287-298,301-320,320-330,338-347 1uod d1uodb_ B:66-74,287-298,301-320,320-330,338-347 1uod d1uoda_ A:66-74,287-298,301-320,320-330,338-347 1uoe d1uoeb_ B:66-74,287-298,301-320,320-330,338-347 1uoe d1uoea_ A:66-74,287-298,301-320,320-330,338-347 1oi3 d1oi3b_ B:66-74,287-298,301-320,320-330,338-347 1oi3 d1oi3a_ A:66-74,287-298,301-320,320-330,338-347 1oi3 d1oi3a_ A:159-177,287-298,301-320,320-330,338-347 1uoe d1uoea_ A:159-177,287-298,301-320,320-330,338-347 1oi3 d1oi3b_ B:159-177,287-298,301-320,320-330,338-347 1oi2 d1oi2a_ A:159-177,287-298,301-320,320-330,338-347 1uoe d1uoeb_ B:159-177,287-298,301-320,320-330,338-347 1uod d1uodb_ B:159-177,287-298,301-320,320-330,338-347 1oi2 d1oi2b_ B:159-177,287-298,301-320,320-330,338-347 1uod d1uoda_ A:159-177,287-298,301-320,320-330,338-347 1mgp d1mgpa_ A:146-164,251-263,264-279,282-289,300-309 1vpv d1vpvb_ B:121-139,226-238,239-254,257-264,275-287 1vpv d1vpva_ A:121-139,226-238,239-254,257-264,275-287 1un8 d1un8a4 A:151-169,253-262,265-279,284-292,301-310 1un8 d1un8b4 B:151-169,253-262,265-279,284-292,301-310 1un9 d1un9a4 A:151-169,253-262,265-279,287-292,301-310 1un9 d1un9b4 B:151-169,253-262,265-279,287-292,301-310