3. c.39.1 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3214567 1l4m d1l4ma_ A:230-239,240-257,259-263,264-279,284-288 1l5k d1l5ka_ A:230-239,240-257,259-263,264-279,284-288 1l4f d1l4fa_ A:230-239,240-257,259-263,264-279,284-288 1l5f d1l5fa_ A:230-239,240-257,259-263,264-279,284-288 1d0s d1d0sa_ A:230-239,240-257,259-263,264-279,284-288 1l4e d1l4ea_ A:230-239,240-257,259-263,264-279,284-288 1l4b d1l4ba_ A:230-239,240-257,259-263,264-279,284-288 1jhm d1jhma_ A:230-239,240-257,259-263,264-279,284-288 1l5l d1l5la_ A:230-239,240-257,259-263,264-279,284-288 1l5o d1l5oa_ A:230-239,240-257,259-263,264-279,284-288 1l4l d1l4la_ A:230-239,240-257,259-263,264-279,284-288 1l4k d1l4ka_ A:230-239,240-257,259-263,264-279,284-288 1l4h d1l4ha_ A:230-239,240-257,259-263,264-279,284-288 1d0v d1d0va_ A:230-239,240-257,259-263,264-279,284-288 1jhv d1jhva_ A:230-239,240-257,259-263,264-279,284-288 1jhp d1jhpa_ A:230-239,240-257,259-263,264-279,284-288 1l5n d1l5na_ A:230-239,240-257,259-263,264-279,284-288 1jho d1jhoa_ A:230-239,240-257,259-263,264-279,284-288 1jhq d1jhqa_ A:230-239,240-257,259-263,264-279,284-288 1jhu d1jhua_ A:230-239,240-257,259-263,264-279,284-288 1jhx d1jhxa_ A:230-239,240-257,259-263,264-279,284-288 1jh8 d1jh8a_ A:230-239,240-257,259-263,264-279,284-288 1jha d1jhaa_ A:230-239,240-257,259-263,264-279,284-288 1jhy d1jhya_ A:230-239,240-257,259-263,264-279,284-288 1jhr d1jhra_ A:230-239,240-257,259-263,264-279,284-288 1l4n d1l4na_ A:230-239,240-257,259-263,264-279,284-289 1l4g d1l4ga_ A:230-239,240-257,259-263,264-279,284-290 1l5m d1l5ma_ A:230-239,240-257,259-263,264-279,284-290 4. c.79.1 Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes consists of two similar domains related by pseudo dyad; duplication ! core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214 1o58 d1o58c_ C:0-7,33-50,55-60,61-76,78-83 1o58 d1o58d_ D:0-7,33-50,54-60,61-76,78-83 1m54 d1m54b_ B:79-87,117-134,139-145,148-162,162-170 2bht d2bhta1 A:3-11,39-56,60-68,69-84,84-93 2bhs d2bhsb1 B:3-11,39-56,60-68,69-84,84-92 2bhs d2bhsc1 C:3-11,39-56,60-68,69-84,84-92 1m54 d1m54f_ F:79-87,117-134,139-145,148-162,162-170 1o58 d1o58b_ B:0-7,33-50,54-60,61-76,78-84 1jbq d1jbqe_ E:79-87,117-134,139-146,148-162,162-171 1jbq d1jbqf_ F:79-87,117-134,139-146,148-162,162-171 1jbq d1jbqa_ A:79-87,117-134,139-146,148-162,162-171 1jbq d1jbqc_ C:79-87,117-134,139-146,148-162,162-171 1jbq d1jbqd_ D:79-87,117-134,139-146,148-162,162-171 2bhs d2bhsa1 A:3-11,39-56,60-68,69-84,84-93 1jbq d1jbqb_ B:79-87,117-134,139-146,148-162,162-171 1o58 d1o58a_ A:0-7,33-50,54-60,61-76,78-85 1m54 d1m54a_ A:79-87,117-134,140-145,148-162,163-170 2bhs d2bhsd1 D:3-11,39-56,62-68,69-84,85-93 2bht d2bhtb1 B:3-11,39-56,60-67,68-84,84-90 1j0b d1j0bh_ H:2-13,160-178,183-189,191-206,209-217 1j0b d1j0bb_ B:2-13,160-178,183-190,191-206,209-217 1j0b d1j0bv_ V:2-13,160-178,183-190,192-206,209-217 1j0b d1j0br_ R:2-13,160-178,183-190,192-206,209-217 1j0b d1j0bp_ P:2-12,160-178,183-189,192-206,209-217 1j0b d1j0bn_ N:2-13,160-178,183-189,192-206,209-217 1j0b d1j0bf_ F:2-13,160-178,183-190,192-206,209-217 1j0b d1j0be_ E:2-13,160-178,183-189,192-206,209-217 1j0b d1j0bw_ W:2-13,160-178,183-190,192-206,209-217 1j0b d1j0bd_ D:2-13,160-179,183-190,192-206,209-217 1j0b d1j0bx_ X:2-13,160-178,183-189,192-206,209-217 1j0b d1j0bs_ S:2-12,160-179,183-189,192-206,209-217 1j0b d1j0bc_ C:2-13,160-179,183-189,192-206,209-217 1j0b d1j0bj_ J:2-13,160-179,183-189,192-206,209-217 1j0b d1j0bt_ T:2-12,160-178,183-189,192-206,209-217 1j0b d1j0bi_ I:2-13,160-178,183-190,192-206,209-217 1j0b d1j0ba_ A:2-12,160-179,183-190,192-206,209-217 1wkv d1wkva1 A:86-95,125-139,144-152,153-168,168-177 1j0a d1j0ac_ C:2-12,160-178,183-190,192-206,209-217 1j0b d1j0bq_ Q:2-12,160-179,183-189,192-206,209-217 1j0a d1j0aa_ A:2-13,160-179,183-189,192-206,209-217 1j0b d1j0bu_ U:2-12,160-179,183-189,192-206,209-217 1j0b d1j0bm_ M:2-12,160-179,183-190,191-206,209-217 1wkv d1wkvb1 B:86-95,125-139,144-152,153-168,168-177 1j0b d1j0bk_ K:2-10,160-179,183-189,192-206,209-217 1j0a d1j0ab_ B:2-10,160-179,183-189,192-206,209-217 1j0b d1j0bl_ L:2-10,160-178,183-189,192-206,209-217 1j0b d1j0bo_ O:2-12,160-179,183-189,192-206,209-217 1j0b d1j0bg_ G:2-10,160-179,183-189,192-206,209-217 2j9x d2j9xb1 B:38-54,85-102,104-110,112-127,128-135 2cll d2cllb1 B:38-54,85-102,104-110,112-127,128-135 2clm d2clmb1 B:38-54,85-102,104-110,112-127,128-135 1kfe d1kfeb_ B:38-54,85-102,104-110,112-127,128-135 2clo d2clob1 B:38-54,85-102,104-110,112-127,128-135 1kfj d1kfjb_ B:38-54,85-102,104-110,112-127,128-135 1a5s d1a5sb_ B:38-54,85-102,104-110,112-127,128-135 3cep d3cepb1 B:38-54,85-102,104-110,112-127,128-135 1ubs d1ubsb_ B:38-54,85-102,104-110,112-127,128-135 2tys d2tysb_ B:38-54,85-102,104-110,112-127,128-135 2rhg d2rhgb1 B:38-54,85-102,104-109,113-127,128-133 1fuy d1fuyb_ B:38-54,85-102,104-110,113-127,128-135 1kfc d1kfcb_ B:38-54,85-102,104-110,112-127,128-135 1v8z d1v8zc1 C:32-48,80-97,99-105,107-122,123-130 2rh9 d2rh9b1 B:38-54,85-102,104-110,112-127,128-135 1k8x d1k8xb_ B:38-54,85-102,104-110,112-127,128-135 1v8z d1v8zb1 B:32-48,80-97,99-105,107-122,123-130 2clf d2clfb1 B:38-54,85-102,104-110,112-127,128-135 2clh d2clhb1 B:38-54,85-102,104-110,112-127,128-135 1c29 d1c29b_ B:38-54,85-102,104-110,112-127,128-135 1k7x d1k7xb_ B:38-54,85-102,104-110,112-127,128-135 1beu d1beub_ B:38-54,85-102,104-110,112-127,128-136 1cx9 d1cx9b_ B:38-54,85-102,104-110,112-127,128-135 1tjp d1tjpb1 B:38-54,85-102,104-110,112-127,128-135 2trs d2trsb_ B:38-54,85-102,104-110,112-127,128-135 1qop d1qopb_ B:38-54,85-102,104-110,112-127,128-135 1k7e d1k7eb_ B:38-54,85-102,104-110,112-127,128-135 1v8z d1v8za1 A:32-48,80-97,99-105,107-122,123-130 2tsy d2tsyb_ B:38-54,85-102,104-110,112-127,128-135 2cli d2clib1 B:38-54,85-102,104-110,112-127,128-135 2wsy d2wsyb_ B:38-54,85-102,104-110,113-127,128-134 2cle d2cleb1 B:38-54,85-102,104-110,112-127,128-135 1wbj d1wbjb1 B:38-54,85-102,104-110,112-127,128-135 2clk d2clkb1 B:38-54,85-102,104-110,112-127,128-135 1k8y d1k8yb_ B:38-54,85-102,104-110,112-127,128-135 1k3u d1k3ub_ B:38-54,85-102,104-110,112-127,128-135 1v8z d1v8zd1 D:32-48,80-97,99-105,107-122,123-130 1a5b d1a5bb_ B:38-54,85-102,104-110,112-127,128-135 1cw2 d1cw2b_ B:38-54,85-102,104-110,112-127,128-135 1kfk d1kfkb_ B:38-54,85-102,104-110,112-127,128-135 1a50 d1a50b_ B:38-54,85-102,104-110,112-127,128-135 1ttp d1ttpb_ B:38-54,85-102,104-110,112-127,128-135 1bks d1bksb_ B:38-54,85-102,104-110,112-127,128-135 1kfb d1kfbb_ B:38-54,85-102,104-110,112-127,128-135 1wdw d1wdwl1 L:32-48,80-97,99-105,107-122,123-130 1wdw d1wdwd1 D:32-48,80-97,99-105,107-122,123-130 1a5a d1a5ab_ B:38-54,85-102,104-110,112-127,128-135 1wdw d1wdwj1 J:32-48,80-97,99-105,107-122,123-130 1k8z d1k8zb_ B:38-54,85-102,104-110,112-127,128-135 1wdw d1wdwb1 B:32-48,80-97,99-105,107-122,123-130 1ttq d1ttqb_ B:38-54,85-102,104-110,112-127,128-135 1wdw d1wdwf1 F:32-48,80-97,99-105,107-122,123-130 1wdw d1wdwh1 H:32-48,80-97,99-105,107-122,123-130 1qoq d1qoqb_ B:38-54,85-102,104-110,112-127,128-135 1k7f d1k7fb_ B:38-54,85-102,104-110,112-127,128-135 1c8v d1c8vb_ B:38-54,85-102,104-110,112-127,128-135 1c9d d1c9db_ B:38-54,85-102,104-110,112-127,128-135 10. c.1.23 FAD-linked oxidoreductase distinct cofactor-binding mode from both FMN- and NAD(P)-linked TIM-barrel oxidoreductases; families are related by a circular permutation ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 2fzn d2fzna2 A:89-101,373-390,398-405,407-425,427-434 2fzm d2fzma2 A:89-101,373-390,398-405,407-425,427-434 1tj0 d1tj0a2 A:89-101,373-390,398-405,407-425,427-434 1tj2 d1tj2a2 A:89-101,373-390,398-405,407-425,427-434 1tiw d1tiwa2 A:89-101,373-390,398-405,407-425,427-434 1tj1 d1tj1a2 A:89-101,373-390,398-405,407-425,427-434 2fzn d2fzna2 A:117-138,488-500,508-514,517-524,536-544 1tj0 d1tj0a2 A:117-138,488-500,508-514,517-524,536-544 2fzm d2fzma2 A:117-138,488-500,508-514,517-524,536-544 1tj2 d1tj2a2 A:117-138,488-500,508-514,517-524,536-544 1tj1 d1tj1a2 A:117-138,488-500,508-514,517-524,536-544 1tiw d1tiwa2 A:117-138,488-500,508-514,517-524,536-544 11. c.130.1 Alpha-2,3/8-sialyltransferase CstII Alpha-2,3/8-sialyltransferase CstII 3 layers: a/b/a; parallel beta-sheet of 8 strands, order 54321678 1ro7 d1ro7b_ B:112-127,131-144,146-152,189-205,206-211 1ro7 d1ro7c_ C:112-127,131-144,146-152,189-205,206-211 1ro8 d1ro8a_ A:112-127,131-144,146-152,189-205,206-211 1ro7 d1ro7d_ D:112-127,131-144,146-152,189-205,206-211 1ro8 d1ro8b_ B:112-127,131-144,146-152,190-205,206-211 1ro7 d1ro7a_ A:112-127,131-144,146-152,189-205,206-211 14. c.49.1 PK C-terminal domain-like Pyruvate kinase C-terminal domain-like 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145, strand 5 is antiparallel to the rest 1pkl d1pklg3 G:358-371,375-392,394-401,403-413,416-423 1pkl d1pkla3 A:358-371,375-392,394-401,403-413,416-423 1pkl d1pkle3 E:358-371,375-392,394-401,403-413,416-423 1f3x d1f3xd3 D:389-402,406-423,424-431,434-444,447-454 1f3x d1f3xh3 H:389-402,406-423,424-431,434-444,447-454 1f3x d1f3xg3 G:389-402,406-423,424-431,434-444,447-454 1f3x d1f3xc3 C:389-402,406-423,424-431,434-444,447-454 1a3w d1a3wa3 A:360-373,377-394,396-402,405-415,418-425 1a3w d1a3wb3 B:360-373,377-394,396-402,405-415,418-425 1a3x d1a3xa3 A:360-373,377-394,396-402,405-415,418-425 3e0v d3e0vf3 F:358-370,375-392,394-400,403-413,416-423 1pkl d1pklc3 C:358-370,375-392,394-401,403-413,416-423 1a3x d1a3xb3 B:360-373,377-394,396-402,405-415,418-425 3e0v d3e0ve3 E:358-370,375-392,394-400,403-413,416-423 3e0v d3e0vb3 B:358-370,375-392,394-400,403-413,416-423 3e0v d3e0vc3 C:358-370,375-392,394-401,403-413,416-423 1pkl d1pkld3 D:358-370,375-392,394-401,403-413,416-423 1pkl d1pklb3 B:358-370,375-392,394-401,403-413,416-423 3e0v d3e0va3 A:358-370,375-392,394-400,403-413,416-423 1f3x d1f3xa3 A:389-402,406-423,424-431,434-444,447-454 1f3x d1f3xe3 E:389-402,406-423,424-431,434-444,447-454 1pkl d1pklf3 F:358-370,375-392,394-401,403-413,416-423 3e0v d3e0vd3 D:358-370,375-392,394-400,403-413,416-423 1pkl d1pklh3 H:358-370,375-392,394-401,403-413,416-423 3e0w d3e0wa3 A:358-370,375-392,394-400,403-413,416-423 1f3x d1f3xb3 B:389-402,406-423,424-431,434-444,447-454 1f3x d1f3xf3 F:389-402,406-423,424-431,434-444,447-454 1a5u d1a5ub3 B:989-1002,1006-1023,1024-1031,1034-1044,1047-1054 1aqf d1aqfc3 C:389-402,406-423,424-431,434-444,447-454 1a49 d1a49b3 B:989-1002,1006-1023,1024-1031,1034-1044,1047-1054 2g50 d2g50b3 B:389-402,406-423,424-431,434-444,447-454 1a5u d1a5ud3 D:2189-2202,2206-2223,2224-2231,2234-2244,2247-2254 2g50 d2g50c3 C:389-402,406-423,424-431,434-444,447-454 2g50 d2g50g3 G:389-402,406-423,424-431,434-444,447-454 2g50 d2g50f3 F:389-402,406-423,424-431,434-444,447-454 2g50 d2g50d3 D:389-402,406-423,424-431,434-444,447-454 1a49 d1a49e3 E:3389-3402,3406-3423,3424-3431,3434-3444,3447-3454 1f3w d1f3wc3 C:389-402,406-423,424-431,434-444,447-454 1f3w d1f3wd3 D:389-402,406-423,424-431,434-444,447-454 1f3w d1f3we3 E:389-402,406-423,424-431,434-444,447-454 1f3w d1f3wh3 H:389-402,406-423,424-431,434-444,447-454 1f3w d1f3wa3 A:389-402,406-423,424-431,434-444,447-454 1f3w d1f3wb3 B:389-402,406-423,424-431,434-444,447-454 1f3w d1f3wf3 F:389-402,406-423,424-431,434-444,447-454 2g50 d2g50a3 A:389-402,406-423,424-431,434-444,447-454 1f3w d1f3wg3 G:389-402,406-423,424-431,434-444,447-454 1a5u d1a5ue3 E:3389-3402,3406-3423,3424-3431,3434-3444,3447-3454 1pkm d1pkma3 A:389-402,406-423,424-431,434-444,447-454 2g50 d2g50e3 E:389-402,406-423,424-431,434-444,447-454 2g50 d2g50h3 H:389-402,406-423,424-431,434-444,447-454 1a5u d1a5ua3 A:389-402,406-423,425-431,434-444,447-454 1a49 d1a49d3 D:2189-2202,2206-2223,2224-2231,2234-2244,2247-2254 1a49 d1a49a3 A:389-402,406-423,424-431,434-444,447-454 1a49 d1a49h3 H:5189-5202,5206-5223,5224-5231,5234-5244,5247-5254 1a5u d1a5uh3 H:5189-5202,5206-5223,5224-5231,5234-5244,5247-5254 1a5u d1a5ug3 G:4589-4602,4606-4623,4624-4631,4634-4644,4647-4654 1a49 d1a49g3 G:4589-4602,4606-4623,4624-4631,4634-4644,4647-4654 1a49 d1a49c3 C:1589-1602,1606-1623,1624-1632,1634-1644,1647-1654 1a5u d1a5uf3 F:3989-4002,4006-4023,4024-4031,4034-4044,4047-4054 1a5u d1a5uc3 C:1589-1602,1606-1623,1624-1631,1634-1644,1647-1654 1a49 d1a49f3 F:3989-4002,4006-4023,4024-4032,4034-4044,4047-4054 1pkn d1pkna3 A:389-402,406-423,424-431,434-444,448-454 1aqf d1aqfg3 G:389-402,406-423,425-431,433-444,447-454 1aqf d1aqfa3 A:389-402,406-423,424-431,433-444,447-454 1aqf d1aqfb3 B:389-402,406-423,425-431,433-444,447-454 1aqf d1aqfd3 D:389-402,406-423,424-431,433-444,447-454 1aqf d1aqff3 F:389-402,406-423,425-431,433-444,448-454 1aqf d1aqfe3 E:389-402,406-423,425-431,433-444,448-454 1aqf d1aqfh3 H:389-402,406-423,425-431,433-444,448-454 16. d.379.1 Taf5 N-terminal domain-like Taf5 N-terminal domain-like multihelical cluster with a C-terminal beta-alpha(2)-beta motif; one central buried helix; parallel beta-ribbon 2j4b d2j4ba1 A:18-33,37-60,108-114,114-129,140-146 2j4b d2j4bd1 D:18-33,37-60,108-114,114-129,140-146 2j4b d2j4bb1 B:17-33,41-60,108-114,114-129,140-146 2j4b d2j4be1 E:18-33,41-60,108-114,114-129,140-146 2j4b d2j4bc1 C:16-33,34-60,108-114,114-129,140-146 2nxp d2nxpe1 E:210-228,229-240,306-310,310-325,338-342 2nxp d2nxpg1 G:210-228,229-240,306-310,310-325,338-342 2nxp d2nxpc1 C:210-228,229-240,306-310,310-325,338-342 2nxp d2nxpf1 F:210-228,229-240,306-310,310-325,338-342 2nxp d2nxph1 H:210-228,229-240,306-310,310-325,338-342 2nxp d2nxpa1 A:210-228,229-240,306-310,310-325,338-342 2nxp d2nxpd1 D:210-228,229-240,306-310,310-325,338-342 2j49 d2j49a1 A:149-166,167-178,241-246,247-262,276-281 17. c.82.1 ALDH-like binds NAD differently from other NAD(P)-dependent oxidoreductases ! ALDH-like consists of two similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145 1uzb d1uzbb_ B:94-113,185-201,202-209,212-227,232-237 1bxs d1bxsc_ C:80-99,170-186,187-194,197-212,217-222 1bxs d1bxsd_ D:80-99,170-186,187-194,197-212,217-222 1uzb d1uzba_ A:94-113,185-201,202-209,212-227,232-237 2eiw d2eiwa1 A:94-113,185-201,202-209,212-227,232-237 2eiw d2eiwb1 B:94-113,185-201,202-209,212-227,232-237 1o9j d1o9jb_ B:80-99,170-186,187-194,197-212,217-222 1bxs d1bxsb_ B:80-99,170-186,186-194,197-212,217-222 1bxs d1bxsa_ A:80-99,170-186,186-194,197-212,217-222 1ag8 d1ag8c_ C:80-99,170-186,187-194,197-212,217-222 1o05 d1o05h_ H:80-99,170-186,187-194,197-212,217-222 1o05 d1o05a_ A:80-99,170-186,187-194,197-212,217-222 1nzz d1nzzh_ H:80-99,170-186,187-194,197-212,217-222 1cw3 d1cw3h_ H:80-99,170-186,187-194,197-212,217-222 1nzz d1nzza_ A:80-99,170-186,187-194,197-212,217-222 1o04 d1o04h_ H:80-99,170-186,187-194,197-212,217-222 1a4z d1a4zc_ C:80-99,170-186,187-194,197-212,217-222 1o05 d1o05g_ G:80-99,170-186,187-194,197-212,217-222 1ag8 d1ag8b_ B:80-99,170-186,187-194,197-212,217-222 1o04 d1o04g_ G:80-99,170-186,187-194,197-212,217-222 1o04 d1o04d_ D:80-99,170-186,187-194,197-212,217-222 1nzz d1nzzd_ D:80-99,170-186,187-194,197-212,217-222 1nzx d1nzxa_ A:80-99,170-186,187-194,197-212,217-222 1ag8 d1ag8a_ A:80-99,170-186,187-194,197-212,217-222 2vle d2vlef1 F:80-99,170-186,187-194,197-212,217-222 1nzz d1nzzg_ G:80-99,170-186,187-194,197-212,217-222 2vle d2vled1 D:80-99,170-186,187-194,197-212,217-222 2vle d2vleg1 G:80-99,170-186,187-194,197-212,217-222 2vle d2vleb1 B:80-99,170-186,187-194,197-212,217-222 1o02 d1o02g_ G:80-99,170-186,187-194,197-212,217-222 1nzz d1nzzb_ B:80-99,170-186,187-194,197-212,217-222 1a4z d1a4za_ A:80-99,170-186,187-194,197-212,217-222 1nzz d1nzzf_ F:80-99,170-186,187-194,197-212,217-222 2vle d2vleh1 H:80-99,170-186,187-194,197-212,217-222 2vle d2vlec1 C:80-99,170-186,187-194,197-212,217-222 1o05 d1o05e_ E:80-99,170-186,187-194,197-212,217-222 1a4z d1a4zb_ B:80-99,170-186,187-194,197-212,217-222 1nzz d1nzze_ E:80-99,170-186,187-194,197-212,217-222 2vle d2vlea1 A:80-99,170-186,187-194,197-212,217-222 1cw3 d1cw3d_ D:80-99,170-186,187-194,197-212,217-222 1cw3 d1cw3f_ F:80-99,170-186,187-194,197-212,217-222 1o02 d1o02b_ B:80-99,170-186,187-194,197-212,217-222 1o05 d1o05d_ D:80-99,170-186,187-194,197-212,217-222 1o01 d1o01b_ B:80-99,170-186,187-194,197-212,217-222 2vle d2vlee1 E:80-99,170-186,187-194,197-212,217-222 1ag8 d1ag8d_ D:80-99,170-186,187-194,197-212,217-222 1o02 d1o02e_ E:80-99,170-186,187-194,197-212,217-222 1nzx d1nzxh_ H:80-99,170-186,187-194,197-212,217-222 1o04 d1o04b_ B:80-99,170-186,187-194,197-212,217-222 1o01 d1o01g_ G:80-99,170-186,187-194,197-212,217-222 1ad3 d1ad3b_ B:21-40,115-131,132-139,142-157,161-166 1o02 d1o02a_ A:80-99,170-186,187-194,197-212,217-222 1o01 d1o01f_ F:80-99,170-186,187-194,197-212,217-222 1nzz d1nzzc_ C:80-99,170-186,187-194,197-212,217-222 1nzx d1nzxc_ C:80-99,170-186,187-194,197-212,217-222 1o04 d1o04a_ A:80-99,170-186,187-194,197-212,217-222 1o04 d1o04e_ E:80-99,170-186,187-194,197-212,217-222 1o01 d1o01a_ A:80-99,170-186,187-194,197-212,217-222 1o05 d1o05f_ F:80-99,170-186,187-194,197-212,217-222 1nzx d1nzxf_ F:80-99,170-186,187-194,197-212,217-222 1o02 d1o02c_ C:80-99,170-186,187-194,197-212,217-222 1o01 d1o01d_ D:80-99,170-186,187-194,197-212,217-222 1o02 d1o02h_ H:80-99,170-186,187-194,197-212,217-222 1nzx d1nzxe_ E:80-99,170-186,187-194,197-212,217-222 1o01 d1o01e_ E:80-99,170-186,187-194,197-212,217-222 1o05 d1o05c_ C:80-99,170-186,187-194,197-212,217-222 1nzx d1nzxd_ D:80-99,170-186,187-194,197-212,217-222 1a4z d1a4zd_ D:80-99,170-186,187-194,197-212,217-222 1cw3 d1cw3e_ E:80-99,170-186,187-194,197-212,217-222 1o04 d1o04c_ C:80-99,170-186,187-194,197-212,217-222 1o01 d1o01h_ H:80-99,170-186,187-194,197-212,217-222 1o02 d1o02d_ D:80-99,170-186,187-194,197-212,217-222 1o04 d1o04f_ F:80-99,170-186,187-194,197-212,217-222 1nzw d1nzwd_ D:80-99,170-186,187-194,197-212,217-222 1nzw d1nzwg_ G:80-99,170-186,187-194,197-212,217-222 1bi9 d1bi9b_ B:80-99,170-186,187-194,197-212,217-222 1nzw d1nzwa_ A:80-99,170-186,187-194,197-212,217-222 1nzw d1nzwe_ E:80-99,170-186,187-194,197-212,217-222 1o05 d1o05b_ B:80-99,170-186,187-194,197-212,217-222 1o01 d1o01c_ C:80-99,170-186,187-194,197-212,217-222 1o9j d1o9jd_ D:80-99,170-186,186-194,197-212,217-222 1o02 d1o02f_ F:80-99,170-186,187-194,197-212,217-222 1nzw d1nzwc_ C:80-99,170-186,187-194,197-212,217-222 1o00 d1o00d_ D:80-99,170-186,187-194,197-212,217-222 1cw3 d1cw3c_ C:80-99,170-186,187-194,197-212,217-222 1nzw d1nzwf_ F:80-99,170-186,187-194,197-212,217-222 1cw3 d1cw3g_ G:80-99,170-186,187-194,197-212,217-222 1nzx d1nzxg_ G:80-99,170-186,187-194,197-212,217-222 1o00 d1o00g_ G:80-99,170-186,187-194,197-212,217-222 1nzw d1nzwh_ H:80-99,170-186,187-194,197-212,217-222 1cw3 d1cw3b_ B:80-99,170-186,187-194,197-212,217-222 1nzx d1nzxb_ B:80-99,170-186,187-194,197-212,217-222 1nzw d1nzwb_ B:80-99,170-186,187-194,197-212,217-222 1bi9 d1bi9a_ A:80-99,170-186,186-194,197-212,217-222 1o00 d1o00b_ B:80-99,170-186,187-194,197-212,217-222 1o00 d1o00a_ A:80-99,170-186,187-194,197-212,217-222 1o00 d1o00h_ H:80-99,170-186,187-194,197-212,217-222 1o00 d1o00e_ E:80-99,170-186,187-194,197-212,217-222 1o9j d1o9jc_ C:80-99,170-186,186-194,197-212,217-222 1cw3 d1cw3a_ A:80-99,170-186,187-194,197-212,217-222 1o00 d1o00c_ C:80-99,170-186,187-194,197-212,217-222 1o00 d1o00f_ F:80-99,170-186,187-194,197-212,217-222 1bi9 d1bi9c_ C:80-99,170-186,186-194,197-212,217-222 1o9j d1o9ja_ A:80-99,170-186,186-194,197-212,217-222 1bi9 d1bi9d_ D:80-99,170-186,186-194,197-212,217-222 1qi1 d1qi1a_ A:60-79,155-171,172-179,182-197,202-206 1qi1 d1qi1b_ B:60-79,155-171,172-179,182-197,202-206 1qi1 d1qi1d_ D:60-79,155-171,172-179,182-197,202-206 1euh d1euha_ A:60-79,155-171,172-179,182-197,202-206 1qi1 d1qi1c_ C:60-79,155-171,172-179,182-197,202-206 1vlu d1vlua_ A:22-41,125-140,141-148,151-170,179-183 1qi6 d1qi6d_ D:60-79,155-171,172-179,182-197,202-206 1qi6 d1qi6b_ B:60-79,155-171,172-179,182-197,202-206 1qi6 d1qi6a_ A:60-79,155-171,172-179,182-197,202-206 2euh d2euha_ A:60-79,155-171,172-179,182-197,202-206 1qi6 d1qi6c_ C:60-79,155-171,172-179,182-197,202-206 2euh d2euhb_ B:60-79,155-171,172-179,182-197,202-206 2euh d2euhc_ C:60-79,155-171,172-179,182-197,202-206 2euh d2euhd_ D:60-79,155-171,172-179,182-197,202-206 1vlu d1vlub_ B:22-41,125-140,141-148,151-170,179-183 1ad3 d1ad3a_ A:21-40,115-131,132-139,142-157,161-165 1wnb d1wnbc_ C:59-78,150-166,167-174,177-189,196-200 1wnd d1wndc_ C:59-78,150-166,167-174,177-189,196-200 1wnd d1wnda_ A:59-78,150-166,167-174,177-189,196-200 1wnb d1wnbd_ D:59-78,150-166,167-174,177-189,196-200 1wnb d1wnbb_ B:59-78,150-166,166-174,177-189,196-200 1uxr d1uxra_ A:75-94,169-185,186-193,196-211,216-220 1o20 d1o20a_ A:22-41,124-139,140-147,150-169,174-178 1uxv d1uxva_ A:75-94,169-185,186-193,196-211,216-220 1uxn d1uxna_ A:75-94,169-185,186-193,196-211,216-220 1ky8 d1ky8a_ A:75-94,169-185,186-193,196-211,216-220 1wnd d1wndd_ D:59-78,150-166,166-174,177-189,196-200 1wnd d1wndb_ B:59-78,150-166,166-174,177-189,196-200 1uxu d1uxua_ A:75-94,169-185,186-193,196-211,216-220 1wnb d1wnba_ A:59-78,150-166,166-174,177-189,196-200 1uxp d1uxpa_ A:75-94,169-185,186-193,196-211,216-220 1uxt d1uxta_ A:75-94,169-185,186-193,196-211,216-220 1uxq d1uxqa_ A:75-94,169-185,186-193,196-211,216-220 1euh d1euhc_ C:60-79,155-171,172-179,179-197,202-206 1euh d1euhd_ D:60-79,155-171,172-179,179-197,202-206 1euh d1euhb_ B:60-79,155-171,172-179,179-197,202-206 1eyy d1eyyc_ C:50-69,156-166,167-173,177-196,201-206 1eyy d1eyyd_ D:50-69,156-166,167-173,177-196,201-206 1eyy d1eyya_ A:50-69,156-166,167-173,177-196,201-206 1eyy d1eyyb_ B:50-69,156-166,167-173,177-196,201-206 1ez0 d1ez0c_ C:50-69,156-166,167-173,177-196,201-206 1ez0 d1ez0d_ D:50-69,156-166,167-173,177-196,201-206 1ez0 d1ez0b_ B:50-69,156-166,167-173,177-196,201-206 1ez0 d1ez0a_ A:50-69,156-166,167-173,177-196,201-206 1a4s d1a4sc_ C:78-97,167-183,183-191,194-209,214-219 1bpw d1bpwc_ C:78-97,167-183,183-191,194-209,214-219 1bpw d1bpwb_ B:78-97,167-183,183-191,194-209,214-219 1bpw d1bpwa_ A:78-97,167-183,183-191,194-209,214-219 1bpw d1bpwd_ D:78-97,167-183,183-191,194-209,214-219 1a4s d1a4sd_ D:78-97,167-183,183-191,194-209,214-219 1a4s d1a4sa_ A:78-97,167-183,183-191,194-209,214-219 1a4s d1a4sb_ B:78-97,167-183,183-191,194-209,214-219 1bi9 d1bi9b_ B:98-111,170-186,187-194,197-212,217-222 1bi9 d1bi9c_ C:98-111,170-186,186-194,197-212,217-222 1bi9 d1bi9d_ D:98-111,170-186,186-194,197-212,217-222 1bi9 d1bi9a_ A:98-111,170-186,186-194,197-212,217-222 18. c.1.13 Malate synthase G TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1p7t d1p7tb_ B:31-47,358-378,385-391,395-414,419-427 1d8c d1d8ca_ A:31-47,358-378,385-391,395-414,419-427 1p7t d1p7ta_ A:31-47,358-378,385-391,395-414,419-427 2gq3 d2gq3a1 A:31-47,359-378,392-398,402-421,426-434 1n8w d1n8wa_ A:31-47,359-378,392-398,402-421,426-434 2gq3 d2gq3b1 B:31-47,359-378,392-398,402-421,426-434 2jqx d2jqxa1 A:31-47,359-378,385-391,395-415,419-425 1n8w d1n8wb_ B:31-47,359-378,392-398,402-421,426-434 1n8i d1n8ia_ A:31-47,359-378,392-398,402-421,426-434 1y8b d1y8ba_ A:31-46,359-378,385-389,405-415,419-424 2jqx d2jqxa1 A:46-72,359-378,385-391,395-415,419-425 23. e.50.1 AF1104-like AF1104-like 2 domains; d1: [all-alpha; 3-helical bundle, similar to the immunoglobulin/albumin-binding domain-like fold (scop_cf 46996)]; d2: [alpha/beta; 3 layers, a/b/a; 6-stranded mixed beta-sheet, order: 321456, strand 6 is antiparallel to the rest] 2ffj d2ffja1 A:98-110,143-153,153-159,168-179,180-189 2g8l d2g8lb1 B:96-110,137-148,149-155,157-175,177-186 2g8l d2g8la1 A:96-110,137-148,149-155,157-176,177-186 2ffj d2ffjb1 B:98-113,143-153,153-159,168-179,180-189 26. c.18.1 Uracil-DNA glycosylase-like Uracil-DNA glycosylase-like 3 layers, a/b/a; core: parallel beta-sheet of 4 strands, order 2134 2uug d2uuga_ A:6-17,45-52,57-64,139-157,157-165 1lqm d1lqmg_ G:6-17,45-52,57-64,140-157,157-165 1lqj d1lqjb_ B:6-17,45-52,57-64,139-157,157-165 1uug d1uuga_ A:6-17,45-52,57-64,139-157,157-165 1eui d1euia_ A:6-17,45-52,57-64,140-156,157-165 2uug d2uugb_ B:6-17,45-52,57-64,139-157,158-165 1lqm d1lqma_ A:6-17,45-52,57-64,139-157,157-165 1uug d1uugc_ C:6-17,45-52,57-64,139-156,157-165 1lqm d1lqme_ E:6-17,45-52,57-64,140-156,157-165 1lqm d1lqmc_ C:6-17,45-52,57-64,139-156,158-165 1lqj d1lqja_ A:6-17,45-52,57-64,139-157,158-165 1lqj d1lqjc_ C:6-17,45-52,57-65,139-157,158-165 1ssp d1sspe_ E:86-94,126-133,138-145,220-238,240-246 2oyt d2oyta1 A:86-94,126-133,138-145,220-238,240-246 1lqg d1lqga_ A:9-17,45-52,57-64,140-157,157-165 2ssp d2sspe_ E:86-94,126-133,138-145,220-238,240-246 1emh d1emha_ A:86-94,126-133,138-145,220-238,238-246 1lqg d1lqgb_ B:9-17,45-52,57-64,140-156,158-165 1emj d1emja_ A:86-94,126-133,138-145,220-238,240-246 1eui d1euib_ B:9-17,45-52,57-64,140-156,157-165 1q3f d1q3fa_ A:86-94,126-133,138-145,220-238,239-246 4skn d4skne_ E:86-94,126-133,138-145,220-237,239-246 1udg d1udga_ A:32-43,69-76,81-88,164-181,181-189 1udi d1udie_ E:32-43,69-76,81-88,164-181,181-189 1okb d1okba_ A:86-94,126-133,138-145,220-238,238-246 1okb d1okbb_ B:86-94,126-133,138-145,220-238,238-246 1udh d1udha_ A:32-43,69-76,81-88,164-181,183-189 2hxm d2hxma1 A:86-94,126-133,138-145,220-238,240-246 1lau d1laue_ E:32-43,69-76,81-88,164-181,181-189 1ugh d1ughe_ E:86-94,126-133,138-145,220-238,240-246 28. c.142.1 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214 2fug d2fugj2 J:49-61,71-80,87-93,110-126,128-136 2fug d2fugs2 S:49-61,71-80,87-93,110-126,128-136 2fug d2fug12 1:49-61,71-80,87-93,110-126,128-136 2fug d2fuga2 A:49-61,71-80,87-93,110-126,128-136 32. e.2.1 Replication terminator protein (Tus) Replication terminator protein (Tus) contains a cluster of helices and a beta-sandwich 2ewj d2ewja1 A:5-32,62-76,93-103,103-133,256-265 1ecr d1ecra_ A:5-32,62-77,93-102,103-133,256-264 2i05 d2i05a1 A:5-32,62-77,93-103,103-133,256-265 2i06 d2i06a1 A:5-32,62-77,94-103,103-133,259-265