1. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1oy1 d1oy1c_ C:132-138,139-149,151-155,181-186,187-193
1vhq d1vhqb_ B:132-138,139-149,151-155,181-186,187-193
1vhq d1vhqa_ A:132-138,139-149,151-155,181-186,187-193
3bwe d3bwec1 C:501-506,507-516,519-524,545-550,551-556
1qvv d1qvvc_ C:132-138,139-147,159-163,208-213,214-219
1oy1 d1oy1b_ B:133-138,139-149,151-155,181-186,187-193
1oy1 d1oy1d_ D:133-138,139-149,151-155,181-186,187-193
1oy1 d1oy1a_ A:133-138,139-149,151-155,181-186,187-193
1qvv d1qvva_ A:132-138,139-147,159-163,208-213,214-219
1oi4 d1oi4a1 A:120-125,126-135,139-143,163-168,170-175
1pv2 d1pv2c_ C:179-186,186-195,203-207,249-255,256-262
1oi4 d1oi4b1 B:320-325,326-335,339-343,363-368,370-375
1pv2 d1pv2d_ D:179-185,186-195,203-207,249-255,256-262
2r1u d2r1ua1 A:100-106,107-116,119-124,145-150,151-156
2r1u d2r1ub1 B:100-106,107-116,119-124,145-150,151-156
1pe0 d1pe0a_ A:100-106,107-116,119-124,145-150,151-156
2or3 d2or3a1 A:100-106,107-116,119-124,145-150,151-156
1pe0 d1pe0b_ B:300-306,307-316,319-324,345-350,351-356
1q2u d1q2ua_ A:100-106,107-116,119-124,145-150,151-156
1pdv d1pdva_ A:100-106,107-116,119-124,145-150,151-156
1pdw d1pdwf_ F:2300-2306,2307-2316,2319-2324,2345-2350,2351-2356
1p5f d1p5fa_ A:100-107,107-116,119-124,145-150,151-156
2or3 d2or3b1 B:100-106,107-116,119-124,145-150,151-156
1soa d1soaa_ A:100-106,107-116,119-124,145-150,151-156
1pdw d1pdwe_ E:2100-2106,2107-2116,2119-2124,2145-2150,2151-2156
1ucf d1ucfb_ B:100-106,107-116,119-124,145-150,151-156
1ucf d1ucfa_ A:100-106,107-116,119-124,145-150,151-156
3bwe d3bwee1 E:900-906,907-916,919-924,945-950,951-956
1pdw d1pdwb_ B:300-306,307-316,319-324,345-350,351-356
1qvv d1qvvd_ D:132-138,138-147,159-163,208-213,214-219
1u9c d1u9ca_ A:120-126,127-135,146-150,190-195,196-201
1pdw d1pdwa_ A:100-106,107-116,119-124,145-150,151-156
3bwe d3bwed1 D:700-706,707-716,719-724,745-750,751-756
1pdw d1pdwd_ D:1300-1306,1307-1316,1319-1324,1345-1350,1351-1356
1pdw d1pdwh_ H:3300-3306,3307-3316,3319-3324,3345-3350,3351-3356
1pdw d1pdwg_ G:3100-3106,3107-3116,3119-3124,3145-3150,3151-3156
1pdw d1pdwc_ C:1100-1106,1107-1116,1119-1124,1145-1150,1151-1156
3bwe d3bwea1 A:100-106,107-116,119-124,145-150,151-156
1qvz d1qvzb_ B:132-138,138-147,159-163,208-213,214-219
1qvw d1qvwb_ B:132-138,138-147,159-163,208-213,214-219
1qvw d1qvwa_ A:132-138,138-147,159-163,208-213,214-219
1qvz d1qvza_ A:132-138,138-147,159-163,208-213,214-219
1g2i d1g2ic_ C:495-500,501-510,514-518,538-543,544-549
1j42 d1j42a_ A:100-106,107-116,119-124,145-150,151-156
1ons d1onsa_ A:178-185,185-194,202-206,248-254,255-261
3bwe d3bweg1 G:1300-1306,1307-1316,1319-1324,1345-1350,1351-1356
1g2i d1g2ia_ A:95-100,101-110,114-118,138-143,144-149
1g2i d1g2ib_ B:295-300,301-310,314-318,338-343,344-349
3bwe d3bwef1 F:1100-1106,1107-1116,1119-1124,1145-1150,1151-1156
3bwe d3bweb1 B:300-306,307-316,319-324,345-350,351-356
3bwe d3bwec1 C:501-506,507-516,538-542,545-550,551-556
1j42 d1j42a_ A:100-106,107-116,138-142,145-150,151-156
1ucf d1ucfb_ B:100-106,107-116,138-142,145-150,151-156
1pdw d1pdwa_ A:100-106,107-116,138-142,145-150,151-156
1izz d1izza_ A:179-185,185-197,202-207,250-255,256-261
2abw d2abwb1 B:82-87,87-94,115-121,183-188,189-194
2abw d2abwa1 A:82-87,87-94,115-121,183-188,189-194
3bwe d3bweg1 G:1300-1306,1307-1316,1338-1342,1345-1350,1351-1356
1r9g d1r9ga_ A:74-79,80-87,101-107,157-162,163-168
1q7r d1q7ra_ A:72-78,78-85,100-106,156-161,162-167
2nv0 d2nv0a1 A:73-79,79-87,101-107,157-162,163-168
1r9g d1r9gb_ B:73-79,80-87,101-107,157-162,163-168
2nv0 d2nv0b1 B:73-79,80-87,101-107,157-162,163-168
1wl8 d1wl8a1 A:73-79,80-90,90-96,147-156,159-164
2a9v d2a9vd1 D:74-80,81-91,92-96,148-157,160-165
2a9v d2a9va1 A:74-80,81-91,92-96,148-157,160-165
2a9v d2a9vc1 C:74-80,81-91,92-96,148-157,160-165
1gpm d1gpmd2 D:80-86,87-97,97-102,162-172,173-179
1gpm d1gpmb2 B:80-86,87-97,97-102,162-172,173-179
1gpm d1gpmc2 C:80-86,87-97,97-102,162-172,173-179
1pv2 d1pv2a_ A:179-186,186-198,203-207,250-255,256-261
1pv2 d1pv2b_ B:179-186,186-198,203-207,249-255,256-262
1gpw d1gpwd_ D:78-84,84-91,90-95,165-170,171-176
1gpm d1gpma2 A:80-86,87-97,97-102,166-172,173-179
1pv2 d1pv2h_ H:179-186,186-198,203-207,249-255,256-262
1kxj d1kxja_ A:78-84,84-91,90-95,165-170,171-176
1pv2 d1pv2e_ E:179-185,186-198,203-207,249-255,256-262
1n57 d1n57a_ A:179-185,186-198,203-207,249-255,256-262
1pv2 d1pv2g_ G:179-186,186-198,203-207,249-255,256-262
1pv2 d1pv2f_ F:179-185,186-198,203-207,249-255,256-262
1izy d1izyb_ B:179-185,186-197,202-207,250-255,256-261
1izy d1izya_ A:179-185,186-197,202-207,250-255,256-261
1t3t d1t3ta2 A:1129-1135,1136-1145,1155-1159,1245-1249,1253-1258
2. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1ega d1egab1 B:6-15,20-30,32-36,46-54,55-62
3. b.50.1 Acid proteases
Acid proteases barrel, closed; n=6, S=10, complex topology
1qdm d1qdmc2 C:228-232,232-244,100S-104S,250-255,297-302
4. c.83.1 Aconitase iron-sulfur domain
Aconitase iron-sulfur domain consists of three similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145
2b3y d2b3ya2 A:19-23,36-50,81-87,188-193,194-199
2b3y d2b3yb2 B:19-23,36-50,81-87,188-193,194-199
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 767 (enumeration index: query2385) of S5
3da1 A:222-227,228-240,245-259,358-363,365-370
2ywc D:73-78,79-89,89-95,149-154,157-162
2ywc B:73-78,79-89,89-95,145-154,157-162
2ywc C:73-78,79-89,89-94,149-154,157-162
2ywc A:73-78,79-89,89-95,145-154,157-162
3cyf A:100-106,107-116,119-124,145-150,151-156
3uk7 B:308-313,314-323,327-331,356-360,361-366
3uk7 A:115-121,121-130,134-138,162-167,168-173
3uk7 C:114-120,121-130,134-138,162-167,168-173
3uk7 B:114-120,121-130,134-138,162-167,168-173
3uk7 A:308-313,314-323,327-331,356-360,361-366
3uk7 C:308-313,314-323,327-331,356-360,361-366
3h45 D:76-83,165-176,180-184,221-228,238-245
3hzl A:198-203,204-216,220-234,333-338,347-353
3cza A:100-106,107-116,119-124,145-150,151-156
3nor A:98-104,105-114,118-122,142-147,148-153
3gra A:126-132,133-142,146-150,172-177,178-183
3l18 B:95-100,101-110,114-118,138-143,144-149
3l18 A:95-100,101-110,114-118,138-143,144-149
3non B:98-104,105-114,118-122,142-147,148-153
3non A:95-101,102-111,114-119,139-144,145-150
3b3a A:100-106,107-116,119-124,145-150,151-156
3cz9 A:100-107,107-116,119-124,145-150,151-156
3n7t A:135-141,142-151,161-165,210-215,216-221
3fse A:105-111,112-121,125-129,149-154,155-160
3fse B:105-111,112-121,125-129,149-154,155-160
3ewn A:148-154,155-164,168-172,192-197,198-203
3noq A:95-101,102-111,115-119,139-144,145-150
3noq B:97-103,104-113,117-121,141-146,147-152
2rk3 A:100-107,107-116,119-124,145-150,151-156
2ywb D:73-78,79-89,89-94,149-154,157-162
2ywb B:73-78,79-89,89-95,145-154,157-162
2ywb A:73-78,79-89,89-94,145-154,157-162
2ywb C:73-78,79-89,89-95,145-154,157-162
3b38 A:100-107,107-116,119-124,145-150,151-156
3l3b A:131-137,138-152,152-156,180-185,186-192
3l3b B:131-137,138-152,152-156,180-185,186-192
2d7j A:73-79,80-90,90-96,147-156,159-164
2r1v A:100-106,107-116,119-124,145-150,151-156
2r1v A:100-106,107-116,138-142,145-150,151-156
2r1v B:100-106,107-116,119-124,145-150,151-156
2iss F:73-77,78-85,100-106,157-162,163-168
2iss E:73-77,78-85,100-106,157-162,163-168
2iss D:73-77,78-85,100-106,157-162,163-168
2r1t B:100-106,107-116,138-142,145-150,151-156
2r1t A:100-106,107-116,119-124,145-150,151-156
2r1t B:100-106,107-116,119-124,145-150,151-156
2rk6 A:100-106,107-116,119-124,145-150,151-156
3mii B:132-138,138-147,159-163,208-213,214-219
3mii A:132-138,138-147,159-163,208-213,214-219
3cy6 A:100-106,107-116,119-124,145-150,151-156
3ezg A:100-106,107-116,119-124,145-150,151-156
3b36 A:100-106,107-116,119-124,145-150,151-156
3sf8 B:100-106,107-116,119-124,145-150,151-156
3sf8 A:100-106,107-116,119-124,145-150,151-156
3sf8 A:100-106,107-116,138-142,145-150,151-156
3noo A:98-104,105-114,118-122,142-147,148-153
3noo B:95-101,102-111,115-119,139-144,145-150
3cne A:105-111,110-121,140-144,147-152,153-158
3cne B:105-111,110-121,124-129,147-152,153-158
3cne C:105-111,110-121,124-129,147-152,153-158
3cne B:105-111,110-121,140-144,147-152,153-158
3cne D:105-111,110-121,124-129,147-152,153-158
3cne A:105-111,110-121,124-129,147-152,153-158
3cne C:105-111,110-121,140-144,147-152,153-158
3kkl A:132-138,138-145,159-163,208-213,214-219
3kkl B:132-138,139-147,159-163,208-213,214-219
2vxo A:99-104,104-115,115-119,175-181,182-188
2vrn A:110-115,116-125,129-133,153-158,159-164
2vrn B:110-115,116-125,129-133,153-158,159-164
3tqi D:80-86,86-97,97-101,162-172,173-179
3f71 A:100-106,107-116,119-124,145-150,151-156
3mgk A:96-102,103-112,115-120,143-148,149-154
3mgk B:96-102,103-112,116-120,143-148,149-154
2ywj A:70-75,75-83,96-102,152-157,158-163
3nov A:98-104,105-114,118-122,142-147,148-153
3eg9 A:22-26,27-35,456-464,476-488,490-505
3l7n A:85-91,92-102,103-107,161-170,172-177
2rk4 A:100-106,107-116,119-124,145-150,151-156
3d54 L:80-86,87-96,100-104,171-175,179-184
3d54 D:80-86,87-96,100-104,171-175,179-184
3d54 H:80-86,87-96,100-104,171-175,179-184