3. b.116.1 Viral chemokine binding protein m3 Viral chemokine binding protein m3 consists of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds 1mkf d1mkfb_ B:211-218,243-248,255-261,361-370,371-379 2nyz d2nyza1 A:211-218,243-248,255-261,361-370,371-379 2nyz d2nyzb1 B:211-218,243-248,255-261,361-370,371-379 2nz1 d2nz1b1 B:211-217,243-248,255-261,361-370,371-378 1ml0 d1ml0a_ A:211-217,243-248,255-261,361-370,371-378 2nz1 d2nz1a1 A:211-217,243-248,255-261,361-370,371-378 2nz1 d2nz1x1 X:211-217,243-248,255-261,361-370,371-378 1mkf d1mkfa_ A:211-217,278-286,348-355,361-370,371-378 1mkf d1mkfa_ A:211-217,243-248,255-261,361-370,371-378 1mkf d1mkfa_ A:67-76,82-90,166-174,179-188,192-203 2nz1 d2nz1a1 A:67-76,82-90,167-174,179-188,192-202 1ml0 d1ml0a_ A:67-76,82-90,167-174,179-188,192-202 1mkf d1mkfb_ B:67-76,82-90,167-174,179-189,191-203 2nyz d2nyzb1 B:67-76,82-90,167-174,179-189,191-203 2nz1 d2nz1x1 X:67-76,82-90,167-174,179-189,191-202 2nz1 d2nz1b1 B:67-76,82-90,167-174,179-189,191-203 2nyz d2nyza1 A:67-75,82-90,167-174,179-188,192-201 6. b.1.26 ICP-like topological variant with similarity to the Cupredoxin-like fold ( Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 2h7w d2h7wb1 B:10-16,20-29,68-78,81-91,101-109 2h7w d2h7wa1 A:10-17,20-29,68-78,80-91,101-110 2nnr d2nnrb1 B:10-17,20-29,68-78,80-91,101-110 2nqd d2nqda1 A:10-16,20-29,68-78,80-91,101-110 3cbj d3cbjb1 B:10-16,20-29,68-78,80-91,101-110 2nnr d2nnra1 A:10-16,20-29,68-78,80-91,101-110 2oul d2oulb1 B:10-16,20-29,68-78,80-91,101-110 3cbk d3cbkb1 B:10-16,20-29,68-78,80-91,100-110 2fo8 d2fo8a1 A:10-16,21-28,69-77,80-91,100-110 7. b.133.1 Dextranase, N-terminal domain Dextranase, N-terminal domain sandwich; 9 strands in 2 sheets; greek-key 1ogo d1ogox1 X:97-107,108-117,145-153,157-165,191-200 1ogm d1ogmx1 X:97-107,108-117,145-153,157-165,191-200 8. b.1.6 Cadherin-like Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 1op4 d1op4a_ A:40-44,51-58,85-92,99-110,111-122 1l3w d1l3wa3 A:224-231,235-243,277-287,294-305,315-324 1q1p d1q1pa2 A:111-119,125-130,169-175,185-196,199-213 1ncg d1ncga_ A:6-10,17-24,57-64,72-83,91-99 1ncj d1ncja1 A:6-11,17-24,57-64,72-83,91-100 1ff5 d1ff5b2 B:111-118,125-130,170-175,185-196,199-212 2qvi d2qvia1 A:6-10,17-24,58-64,72-83,91-99 1nch d1ncha_ A:6-10,18-24,58-64,72-83,91-99 1edh d1edhb1 B:6-11,17-24,57-64,72-83,91-100 1ff5 d1ff5a2 A:111-119,125-130,170-175,185-196,199-213 1ncj d1ncja2 A:111-119,123-130,169-174,184-195,202-215 1edh d1edha1 A:6-11,17-24,57-64,72-83,91-100 1ff5 d1ff5a1 A:6-11,17-24,57-64,72-83,91-100 1nci d1ncib_ B:6-11,17-24,57-64,72-83,91-100 1ff5 d1ff5b1 B:6-11,17-24,57-64,72-83,91-100 1edh d1edhb2 B:111-119,123-130,170-176,185-196,199-213 2qvi d2qvia2 A:111-119,123-130,169-175,184-195,202-215 1nci d1ncia_ A:6-11,17-24,57-64,72-83,91-100 1edh d1edha2 A:111-119,124-130,170-175,185-196,199-213 1l3w d1l3wa2 A:112-119,123-130,169-176,185-196,199-213 1q1p d1q1pa1 A:7-11,17-24,57-64,72-83,91-100 2omy d2omyb1 B:7-11,17-24,57-64,72-83,91-100 2omu d2omub1 B:7-11,17-24,57-64,72-83,91-100 2omx d2omxb1 B:7-11,17-24,57-64,72-83,91-101 1u2c d1u2ca1 A:67-72,75-80,112-118,125-138,140-156 1l3w d1l3wa5 A:443-450,454-462,492-499,505-515,518-531 9. b.1.19 Antigen MPT63/MPB63 (immunoprotective extracellular protein) Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 1lmi d1lmia_ A:4-8,11-19,20-34,115-122,123-131 10. b.4.1 HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain sandwich; 6 strands in 2 sheets 2b26 d2b26a2 A:266-276,280-290,292-301,306-313,326-336 1c3g d1c3ga1 A:180-189,195-208,210-223,227-235,246-256 1c3g d1c3ga2 A:266-276,280-290,292-301,308-313,326-336 2b26 d2b26b2 B:266-275,280-290,292-301,308-313,326-335 1nlt d1nlta2 A:264-273,279-287,291-299,308-313,325-334 2b26 d2b26a1 A:181-189,195-208,210-223,227-232,248-256 1nlt d1nlta1 A:111-123,129-143,208-222,226-234,242-254 2b26 d2b26b1 B:180-189,195-201,217-223,229-235,247-256 12. b.6.2 Major surface antigen p30, SAG1 SS-crosslinked beta-sandwich of distinct geometry but topologically similar to cupredoxins ! Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands 1kzq d1kzqb1 B:15-24,28-34,92-97,104-115,120-131 1kzq d1kzqa1 A:15-24,28-34,92-97,104-115,120-131 1ynt d1yntf1 F:2015-2024,2028-2034,2092-2097,2104-2115,2120-2131 1ynt d1yntg1 G:3015-3024,3028-3034,3092-3097,3104-3115,3120-3131 1ynt d1yntg2 G:3146-3156,3161-3167,3216-3221,3230-3241,3243-3254 1ynt d1yntf2 F:2146-2156,2161-2167,2216-2221,2230-2241,2243-2254 1kzq d1kzqb2 B:146-156,161-167,216-221,229-241,243-255 14. b.1.11 PapD-like contains PP switch between strands D and C' ! Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 1bf8 d1bf8a1 A:8-13,16-24,60-70,80-92,106-117 1grw d1grwc_ C:15-21,23-37,64-77,87-96,112-126 1grw d1grwb_ B:15-21,23-37,64-77,87-96,112-126 1m1s d1m1sa_ A:106-110,113-125,152-165,167-179,195-206 1row d1rowa_ A:8-12,15-27,54-67,69-81,98-108 1row d1rowb_ B:8-12,15-27,54-67,69-81,97-108 1qpp d1qppb1 B:7-14,16-25,62-72,83-95,105-118 1grw d1grwa_ A:15-21,23-37,64-77,87-96,115-126 1qpx d1qpxa1 A:7-14,16-25,62-72,83-95,105-118 2os7 d2os7a1 A:20-25,29-37,73-83,92-103,134-144 2j7l d2j7la1 A:7-14,16-25,62-72,83-95,107-118 1grw d1grwd_ D:15-21,23-37,64-77,87-96,115-126 1msp d1mspb_ B:15-21,25-37,64-76,87-96,115-126 2os7 d2os7b1 B:19-25,29-38,72-83,92-103,133-144 2msp d2mspb_ B:15-21,23-37,65-77,87-96,112-126 2msp d2mspa_ A:15-21,23-37,65-77,87-96,112-126 1l4i d1l4ib1 B:7-13,16-26,59-70,80-92,106-117 3dpa d3dpaa1 A:7-14,16-26,61-72,83-94,106-118 1qpx d1qpxb1 B:7-12,16-26,61-72,83-94,104-116 2msp d2mspd_ D:15-21,23-37,65-77,87-96,112-126 2msp d2mspf_ F:15-21,23-37,65-77,87-96,112-126 2msp d2mspc_ C:15-21,23-37,65-77,87-96,112-126 2msp d2mspg_ G:15-21,23-37,65-77,87-96,112-126 1msp d1mspa_ A:15-21,23-37,65-77,87-96,115-126 3msp d3mspa_ A:15-21,25-37,65-76,87-96,115-126 3msp d3mspb_ B:15-21,25-37,65-76,87-96,115-126 1l4i d1l4ia1 A:7-13,17-25,60-70,80-92,105-117 1qpp d1qppa1 A:7-14,16-26,61-72,83-95,106-118 2msp d2mspe_ E:15-21,23-37,65-77,87-96,115-126 2msp d2msph_ H:15-21,23-37,65-77,87-96,115-126 1klf d1klfm1 M:8-13,16-25,60-71,79-91,101-117 1klf d1klfo1 O:8-13,16-25,60-71,79-91,101-117 1klf d1klfi1 I:8-13,16-25,60-71,79-91,101-117 1klf d1klfk1 K:8-13,16-25,60-71,79-91,101-117 1kiu d1kium1 M:8-13,16-20,61-70,79-91,100-117 1kiu d1kiuk1 K:8-13,16-20,61-70,79-91,100-117 1kiu d1kiuo1 O:8-13,16-20,61-70,79-91,100-117 1kiu d1kiui1 I:8-13,16-20,61-70,79-91,100-117 1n0l d1n0lc1 C:8-14,16-26,61-72,83-95,100-118 1n0l d1n0la1 A:8-14,16-26,61-72,83-95,100-118 2j2z d2j2za1 A:8-14,16-26,61-72,83-95,100-118 1klf d1klfc1 C:8-13,16-26,59-70,79-91,101-117 1klf d1klfa1 A:8-13,16-26,59-70,79-91,101-117 1klf d1klfe1 E:8-13,16-26,59-70,79-91,101-117 1klf d1klfg1 G:8-13,16-26,59-70,79-91,101-117 2uy6 d2uy6a1 A:8-14,16-26,61-72,83-94,100-118 1qun d1quna1 A:8-13,16-26,59-70,79-92,100-117 1qun d1qung1 G:8-13,16-26,59-70,79-92,100-117 1qun d1qunc1 C:8-13,16-26,59-70,79-92,100-117 1qun d1qune1 E:8-13,16-26,59-70,79-92,100-117 2uy7 d2uy7a1 A:8-14,16-26,61-72,83-94,100-118 2uy7 d2uy7e1 E:8-14,16-26,61-72,83-94,100-118 2uy7 d2uy7c1 C:8-14,16-26,61-72,83-94,100-118 2uy7 d2uy7g1 G:8-14,16-26,61-72,83-94,100-118 1qun d1qunm1 M:8-13,17-25,60-70,80-92,101-117 1qun d1quni1 I:8-13,17-25,60-70,80-92,101-117 1qun d1qunk1 K:8-13,17-25,60-70,80-92,101-117 1qun d1quno1 O:8-13,17-25,60-70,80-92,101-117 1ze3 d1ze3c1 C:8-13,17-25,60-70,79-92,101-117 2os7 d2os7e1 E:20-25,29-37,73-83,92-103,126-144 2os7 d2os7c1 C:20-25,29-37,73-83,92-103,126-144 2os7 d2os7f1 F:19-25,29-38,72-81,92-103,127-144 2os7 d2os7d1 D:19-25,29-38,72-83,92-103,126-144 1kiu d1kiue1 E:8-13,17-26,59-70,79-92,100-117 1kiu d1kiug1 G:8-13,17-26,59-70,79-92,100-117 1kiu d1kiua1 A:8-13,17-26,59-70,79-92,100-117 1kiu d1kiuc1 C:8-13,17-26,59-70,79-92,100-117 2co7 d2co7b1 B:20-26,29-38,70-81,90-101,115-133 16. b.1.24 Accessory protein X4 (ORF8, ORF7a) Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 1xak d1xaka_ A:-1-10,12-18,37-43,45-53,55-66 20. b.1.27 CalX-like Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands 2fwu d2fwua1 A:510-517,519-528,568-576,584-597,641-649 2dpk d2dpka1 A:379-385,388-399,436-445,452-466,490-498 2fws d2fwsa1 A:379-385,388-398,436-445,454-467,491-498 21. g.41.17 CSL zinc finger Rubredoxin-like metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2 1yop d1yopa1 A:6-10,19-27,29-35,44-49,52-59 1wge d1wgea1 A:11-17,26-34,36-42,51-57,58-66