1. b.52.1 Barwin-like endoglucanases
Double psi beta-barrel barrel, closed; n=6, S=10; complex topology with crossover (psi) loops
2pic d2pica1 A:117-122,132-139,152-163,207-219,219-231
2pjj d2pjja1 A:117-123,132-139,152-163,207-219,219-231
2ae0 d2ae0x1 X:117-123,132-139,152-163,207-219,219-231
2gae d2gaea1 A:138-143,152-159,172-183,227-239,239-251
2pnw d2pnwa1 A:115-121,156-163,177-188,231-243,242-254
2pi8 d2pi8c1 C:117-122,132-139,152-163,207-219,219-231
2pi8 d2pi8b1 B:117-122,132-139,152-163,207-219,219-231
2pi8 d2pi8a1 A:117-122,132-139,152-163,207-219,219-231
2pi8 d2pi8d1 D:117-122,132-139,152-163,207-219,219-231
2g5d d2g5da1 A:156-162,231-238,252-263,306-318,317-329
2g6g d2g6ga1 A:156-164,231-238,252-263,306-318,317-329
2pjj d2pjja1 A:117-123,132-139,152-163,190-199,219-231
2pic d2pica1 A:117-122,132-139,152-163,190-199,219-231
2ae0 d2ae0x1 X:117-123,132-139,152-163,190-199,219-231
2g5d d2g5da1 A:156-162,231-238,252-263,289-298,317-329
2gae d2gaea1 A:138-143,152-159,172-183,210-219,239-251
2pnw d2pnwa1 A:115-121,156-163,177-188,214-223,242-254
2pi8 d2pi8d1 D:117-122,132-139,152-163,190-199,219-231
2g6g d2g6ga1 A:156-164,231-238,252-263,289-298,317-329
2. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1qhl d1qhla_ A:19-24,24-35,37-53,190-208,209-222
3. c.50.1 Macro domain-like
Macro domain-like 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 165243, strand 3 is antiparallel to the rest
1ty8 d1ty8a_ A:72-81,161-181,192-199,201-219,223-236
1ty8 d1ty8a_ A:139-150,161-181,192-199,201-219,223-236
4. e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit !
beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization
2gho d2ghod1 D:483-487,845-854,929-945,1254-1265,1340-1360
3dxj d3dxjn1 N:774-778,1136-1145,1220-1236,1254-1265,1340-1360
5. i.7.1 Reovirus components
Reovirus components
1ej6 d1ej6b_ B:603-609,622-640,641-657,699-713,759-778
1ej6 d1ej6c_ C:603-608,622-640,641-657,699-713,759-779
6. c.55.3 Ribonuclease H-like consists of one domain of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1bcm d1bcmb2 B:297-307,310-326,340-348,362-371,481-490
7. e.28.1 Reovirus inner layer core protein p3
Reovirus inner layer core protein p3 large protein without apparent domain division; has a number of all-alpha regions and one all beta domain near the C-end
1uf2 d1uf2b_ B:369-375,384-399,404-424,466-478,552-569
1uf2 d1uf2a_ A:369-375,384-399,404-424,466-478,552-569
8. d.128.1 Glutamine synthetase/guanido kinase
Glutamine synthetase/guanido kinase duplication: common core consists of two beta-alpha-beta2-alpha repeats
1r8g d1r8gb_ B:133-141,157-166,180-187,279-291,306-319
9. a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like multidomain flavoprotein; N-terminal domain is all-alpha; the middle domain is open (5,8) barrel !
Bromodomain-like 4 helices; bundle; minor mirror variant of up-and-down topology
1rx0 d1rx0b1 B:67-71,79-95,94-115,239-281,290-321
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 885 (enumeration index: query2485.2624) of S5
3kz4 A:391-396,400-415,420-441,465-478,503-519
3k1q C:540-545,559-577,578-594,636-650,695-715
3k1q B:540-545,559-577,578-594,636-650,695-714
3hl6 B:95-99,99-111,151-166,170-186,190-210
3ijw A:62-71,157-166,179-190,218-233,249-264
3ijw B:62-71,157-166,179-190,219-233,249-264
3czb B:152-156,193-201,210-221,264-276,275-288
3czb A:152-156,193-201,210-221,265-276,275-288
2wwy B:316-322,394-406,419-431,433-449,453-463
2wwy A:316-322,394-406,419-431,433-449,453-463
3gzu A:391-396,400-415,420-441,465-478,503-519
3bpt A:163-167,179-188,190-199,303-320,321-340
3n09 A:391-396,400-415,420-441,465-478,503-519
3e4f A:62-71,157-166,179-190,218-233,249-264
3e4f B:62-71,157-166,179-190,218-233,249-264
3n0m B:62-71,157-166,179-190,218-233,249-264
3p5j B:45-56,92-102,123-131,133-143,156-179
2v1x A:316-322,394-406,419-431,435-449,453-463
3i99 A:91-100,102-114,115-122,204-211,215-232
3gut F:389-400,443-462,464-471,470-477,487-505
3gut H:389-399,443-462,464-471,470-477,487-505
3gut D:389-399,443-462,464-471,470-477,487-505
3gut B:389-401,443-462,464-471,470-477,487-505
3b96 A:104-108,116-132,131-153,285-326,336-367
2uxw A:144-148,156-172,171-193,325-366,376-407
3iyl X:541-546,559-577,578-594,636-650,695-714
2ipc B:269-275,777-803,810-823,829-838,838-862
2ipc D:269-275,777-803,810-823,829-838,838-862
2ipc C:269-275,777-803,810-823,829-838,838-862
2ipc A:269-275,777-803,810-823,829-838,838-862
2nyg E:63-72,159-168,181-191,220-235,251-270
1gpj A:49-57,77-91,99-117,120-142,285-352