1. b.2.4 Alpha-macroglobulin receptor domain
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
1ayo d1ayoa_ A:25-35,42-50,57-67,68-76,77-85
1ayo d1ayob_ B:24-35,42-50,57-68,68-76,77-85
1edy d1edyb_ B:24-35,42-50,57-68,69-77,78-86
1edy d1edya_ A:24-35,42-50,57-68,69-77,78-86
1bv8 d1bv8a_ A:24-35,41-48,56-67,70-76,77-85
2. b.119.1 C-terminal autoproteolytic domain of nucleoporin nup98
C-terminal autoproteolytic domain of nucleoporin nup98 multisheet protein with a mixture of beta-sandwich and beta-prism features
1ko6 d1ko6.1 A:780-784,800-808,830-843,844-852,853-862
1ko6 d1ko6.2 C:780-785,800-808,830-843,844-852,853-862
3. b.28.1 Baculovirus p35 protein has a few helices inserted in loops !
Baculovirus p35 protein sandwich; 14 strands in 2 sheets; greek-key
1p35 d1p35a_ A:176-184,191-202,206-217,268-274,275-284
1i3s d1i3sa_ A:176-184,191-202,206-217,268-274,275-284
1i3s d1i3sb_ B:176-184,191-202,206-217,258-274,275-284
1i3s d1i3sc_ C:176-184,191-202,206-217,258-274,275-284
4. b.38.5 TrmB C-terminal domain-like sugar-binding domain; permuted OB-fold?
Sm-like fold core: barrel, open; n*=4, S*=8; meander; SH3-like topology
2f5t d2f5tx1 X:238-246,248-255,255-271,271-282,331-338
5. d.240.1 Lesion bypass DNA polymerase (Y-family), little finger domain
Lesion bypass DNA polymerase (Y-family), little finger domain beta-alpha-beta(2)-alpha-beta; antiparallel beta-sheet: order 1423; "reversed" ferredoxin-like topology
1jih d1jihb1 B:123-127,394-401,408-435,441-450,495-505
1jih d1jiha1 A:123-127,394-401,408-435,441-450,494-505
2r8k d2r8ka1 A:123-127,394-401,408-435,441-450,495-505
2r8k d2r8kb1 B:123-127,393-401,408-435,441-450,494-505
2r8j d2r8jb1 B:123-127,393-401,408-435,441-450,495-509
2r8j d2r8ja1 A:123-127,394-401,408-435,441-450,495-509
6. c.52.1 Restriction endonuclease-like
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
1azo d1azoa_ A:76-85,92-98,111-118,180-185,209-214
7. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1ua7 d1ua7a2 A:63-67,101-105,111-118,120-124,143-148
1bag d1baga2 A:63-67,101-105,111-118,120-124,143-148
8. b.85.4 dUTPase-like forms tight trimer through an additional beta-sheet in each subunit ! subunit beta-sheets are orthogonally packed around the three-fold axis !
beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
1f7p d1f7pc_ C:417-424,430-438,455-462,462-466,478-486
1f7q d1f7qc_ C:417-424,430-438,455-462,462-466,478-486
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 628 (enumeration index: query2620) of S5
2y1t C:23-30,36-44,61-69,69-73,90-98
2y1t F:23-30,36-44,61-69,69-73,90-98
2y1t D:23-30,36-44,61-69,69-73,90-98
2y1t B:23-30,36-44,61-69,69-73,90-98
2y1t E:23-30,36-44,61-69,69-73,90-98
2rqa A:552-557,575-580,581-588,615-626,627-633
3mfi A:123-127,393-401,408-435,441-450,494-505
3s9n A:198-205,231-236,338-350,349-353,363-367
3km9 A:1399-1409,1420-1429,1435-1445,1450-1457,1458-1466
3km9 B:1399-1409,1420-1429,1435-1445,1450-1457,1458-1466
3ri5 B:37-44,140-151,171-179,180-184,197-212
3ri5 D:37-45,140-151,171-179,180-184,197-212
3ri5 A:37-44,140-151,171-179,180-184,197-212
3ri5 C:37-44,140-151,171-179,180-184,197-212
3ri5 E:37-44,140-151,171-179,180-184,197-212
2hr0 B:1358-1371,1377-1385,1392-1402,1408-1414,1420-1428
2d4n A:122-129,139-144,161-168,168-172,184-191
3tps A:40-47,57-62,79-86,86-90,102-109
2we2 A:139-145,146-155,171-178,178-182,190-199
2bj0 A:24-42,132-142,157-165,169-183,190-203
3eps B:311-315,376-382,386-398,400-405,406-412
3eps A:311-315,376-382,386-398,400-405,406-412
3eps B:332-339,376-382,386-398,400-405,406-412
3eps A:332-339,376-382,386-398,400-405,406-412
3f4f A:36-42,43-51,68-76,76-80,92-100
3trl A:40-47,57-62,79-86,86-90,102-109
3tp1 A:40-47,57-62,79-86,86-90,102-109
2xy3 B:23-30,36-44,61-69,69-73,90-98
2xy3 E:23-30,36-44,61-69,69-73,90-98
2xy3 D:23-30,36-44,61-69,69-73,90-98
2xy3 A:23-30,36-44,61-69,69-73,90-98
3lcb A:311-315,376-382,386-398,400-405,406-412
3lcb B:332-339,376-382,386-398,400-405,406-412
3lcb B:311-315,376-382,386-398,400-405,406-412
3lcb A:332-339,376-382,386-398,400-405,406-412
3tpy A:40-47,57-62,79-86,86-90,102-109
3ria B:37-45,140-151,171-179,180-184,197-212
3ria D:37-45,140-151,171-179,180-184,197-212
3ria A:37-45,140-151,171-179,180-184,197-212
3ria C:37-45,140-151,171-179,180-184,197-212
3ria E:37-45,140-151,171-179,180-184,197-212
2xgp B:123-127,393-401,408-435,441-450,495-505
2xgp A:123-127,394-401,408-435,441-450,495-505
3tpn A:40-47,57-62,79-86,86-90,102-109
3hhq C:36-42,43-51,68-76,76-80,92-100
3hhq N:36-42,43-51,68-76,76-80,92-100
3hhq H:36-42,43-51,68-76,76-80,92-100
3hhq T:36-42,43-51,68-76,76-80,92-100
3hhq U:36-42,43-51,68-76,76-80,92-100
3hhq W:36-42,43-51,68-76,76-80,92-100
3hhq V:36-42,43-51,68-76,76-80,92-100
3hhq L:36-42,43-51,68-76,76-80,92-100
3hhq M:36-42,43-51,68-76,76-80,92-100
3s9m A:198-205,231-236,338-350,349-353,363-367
2a73 B:1358-1371,1377-1385,1392-1402,1407-1414,1420-1428
2vfj B:230-235,271-275,298-308,308-314,323-330
2vfj D:230-235,271-275,298-308,308-314,323-330
2vfj A:230-235,271-275,298-308,308-316,321-330
2vfj C:230-235,271-275,298-308,308-315,322-330
3tsl A:40-47,57-62,79-86,86-90,102-109
3kls A:1399-1409,1420-1428,1435-1445,1451-1457,1458-1466
3kls B:1399-1409,1420-1428,1435-1445,1451-1457,1458-1466
3trn A:40-47,57-62,79-86,86-90,102-109
2pc5 B:56-62,63-71,88-96,96-100,112-120
3cu7 A:1399-1409,1420-1428,1435-1445,1451-1457,1458-1466
3cu7 B:1399-1409,1420-1428,1435-1445,1451-1457,1458-1466
3tq4 A:40-47,57-62,79-86,86-90,102-109
2xgq A:123-127,393-401,408-435,441-450,495-505
2xgq B:123-127,393-401,408-435,441-450,495-505
3km3 B:76-81,82-91,107-114,114-119,130-138
2qfb C:805-812,829-834,835-842,869-880,881-888
2qfb E:805-812,829-834,835-843,871-880,881-888
2qfb F:805-812,829-834,835-842,870-880,881-888
2qfb H:805-812,829-834,835-843,869-880,881-887
3tpw A:40-47,57-62,79-86,86-90,102-109
2xcd C:25-32,38-46,63-71,71-75,92-100
2xcd D:25-32,38-46,63-71,71-75,92-100
2xcd A:25-32,38-46,63-71,71-75,92-100
2wtf B:123-127,394-401,408-435,441-450,495-505
2wtf A:123-127,393-401,408-435,441-450,495-505
2q5y A:780-785,800-808,830-843,844-852,853-862
3pvm C:1398-1409,1420-1428,1435-1445,1450-1457,1458-1466
3pvm A:1398-1409,1420-1428,1435-1445,1450-1457,1458-1466
2w4r C:552-558,575-580,581-588,615-626,627-633
2xce B:25-32,38-46,63-71,71-75,92-100
2xce C:25-32,38-46,63-71,71-75,92-100
2xce D:25-32,38-46,63-71,71-75,92-100
3rhw B:37-45,140-151,171-179,180-184,197-212
3rhw D:37-45,140-151,171-179,180-184,197-212
3rhw A:37-45,140-151,171-179,180-184,197-212
3rhw C:37-45,140-151,171-179,180-184,197-212
3rhw E:37-45,140-151,171-179,180-184,197-212
2we1 A:139-145,146-155,171-178,178-182,190-199
2baz A:23-30,36-44,61-69,69-73,90-98
2baz B:23-30,36-44,61-69,69-73,90-98
2baz C:23-30,36-44,61-69,69-73,90-98
3prx A:1398-1409,1420-1428,1435-1446,1450-1457,1458-1466
3prx C:1398-1409,1420-1428,1435-1446,1450-1457,1458-1466
3rif B:37-45,140-151,171-179,180-184,197-212
3rif D:37-45,140-151,171-179,180-184,197-212
3rif A:37-45,140-151,171-179,180-184,197-212
3rif C:37-45,140-151,171-179,180-184,197-212
3rif E:37-45,140-151,171-179,180-184,197-212
2b39 B:1380-1392,1398-1407,1413-1423,1428-1435,1440-1448
2b39 A:1380-1392,1398-1407,1413-1423,1429-1434,1440-1448
3lc6 A:332-339,376-382,386-398,400-405,406-412
3qe5 B:1023-1039,1045-1052,1059-1068,1069-1077,1078-1086
2xx6 C:23-30,36-44,61-69,69-73,90-98
2xx6 B:23-30,36-44,61-69,69-73,90-98
2xx6 D:23-30,36-44,61-69,69-73,90-98
2xx6 A:23-30,36-44,61-69,69-73,90-98
3dkb D:3230-3235,3271-3275,3298-3308,3308-3316,3321-3330
3dkb A:6230-6235,6271-6275,6298-6308,6308-6316,6321-6330
3dkb E:4230-4235,4271-4275,4298-4308,4308-4316,4321-4330
3dkb B:1230-1235,1271-1275,1298-1308,1308-1316,1321-1330
3dkb F:5230-5235,5271-5275,5298-5308,5308-5316,5321-5330
3dkb C:2230-2235,2271-2275,2298-2308,2308-2316,2321-2330
2q5x A:780-784,799-808,830-843,844-852,853-862
2qfd C:805-812,829-834,835-843,869-880,881-888
2qfd E:805-812,829-834,835-843,870-880,881-888
2qv3 A:678-683,691-700,717-727,777-784,785-792