1. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1ltx d1ltxr1 R:51-65,94-103,225-229,446-458,541-554
1vg9 d1vg9g1 G:51-65,94-103,225-229,446-458,541-554
1vg9 d1vg9c1 C:51-65,94-103,225-229,446-458,541-554
1vg9 d1vg9a1 A:51-63,94-103,225-229,446-458,541-554
1vg9 d1vg9e1 E:51-63,94-103,225-229,446-458,541-554
1vg0 d1vg0a1 A:51-63,94-103,225-229,446-458,541-554
2. c.43.1 CoA-dependent acyltransferases
CoA-dependent acyltransferases core: 2 layers, a/b; mixed beta-sheet of 6 strands, order 324561; strands 3 & 6 are antiparallel to the rest
1t1u d1t1ua2 A:291-302,401-409,557-562,569-578,579-588
1q6x d1q6xa2 A:291-302,401-409,557-562,569-578,579-588
1q6x d1q6xb2 B:291-302,401-409,557-562,569-578,579-588
1ndi d1ndia2 A:299-311,407-415,561-566,573-582,583-592
1t7q d1t7qb2 B:299-311,407-415,561-566,573-582,583-592
1ndb d1ndbb2 B:299-311,407-415,561-566,573-582,583-592
1ndi d1ndib2 B:299-311,407-415,561-566,573-582,583-592
1ndf d1ndfa2 A:299-311,407-415,561-566,573-582,583-592
1t7q d1t7qa2 A:299-311,407-415,561-566,573-582,583-592
1ndb d1ndba2 A:299-311,407-415,561-566,573-582,583-592
1t7o d1t7oa2 A:299-311,407-415,561-566,573-582,583-592
2h3u d2h3ub2 B:299-311,407-415,561-566,573-582,583-592
2h3p d2h3pa2 A:299-311,407-415,561-566,573-582,583-592
2h3u d2h3ua2 A:299-311,407-415,561-566,573-582,583-592
1t7n d1t7na2 A:299-311,407-415,561-566,573-582,583-592
2h3p d2h3pb2 B:299-311,407-415,561-566,573-582,583-592
1ndf d1ndfb2 B:299-311,407-415,561-566,573-582,583-592
2h3w d2h3wb2 B:299-311,407-415,561-566,573-582,583-592
1s5o d1s5oa2 A:278-290,386-394,540-545,552-561,562-571
2h3w d2h3wa2 A:299-311,407-415,561-566,573-582,583-592
1nm8 d1nm8a2 A:278-290,386-394,540-545,552-561,562-571
3. e.8.1 DNA/RNA polymerases "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain !
DNA/RNA polymerases divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
1s1t d1s1ta2 A:27-45,46-50,71-76,128-134,140-147
2ops d2opsa1 A:27-45,46-50,72-76,128-133,141-147
1rtj d1rtja2 A:27-45,46-50,70-76,128-133,141-147
1fkp d1fkpa2 A:27-45,46-50,70-76,128-133,141-147
1iky d1ikyb_ B:1027-1045,1046-1050,1070-1076,1129-1133,1141-1147
1rti d1rtia2 A:27-45,46-50,70-76,128-133,141-147
1klm d1klma2 A:27-45,46-50,70-76,128-134,140-147
1s1u d1s1ua2 A:27-45,46-50,70-76,128-134,140-147
1rt3 d1rt3a2 A:27-45,46-50,70-76,128-133,141-147
1s1v d1s1va2 A:27-45,46-50,71-76,128-133,141-147
1dtq d1dtqa2 A:27-45,46-50,70-76,128-134,140-147
1vrt d1vrta2 A:27-45,46-50,70-76,128-134,140-147
1rth d1rtha2 A:27-45,46-50,71-76,128-133,141-147
1fko d1fkoa2 A:27-45,46-50,71-76,128-133,141-147
1tv6 d1tv6b1 B:27-45,46-50,70-76,128-133,141-147
1lw2 d1lw2b_ B:27-45,46-50,70-76,128-133,141-147
1hvu d1hvud2 D:27-45,46-50,70-76,128-133,141-147
1hvu d1hvua2 A:27-45,46-50,70-76,128-133,141-147
1hvu d1hvuj2 J:27-45,46-50,70-76,128-133,141-147
1hvu d1hvug2 G:27-45,46-50,70-76,128-133,141-147
1c1b d1c1ba2 A:27-45,46-50,71-76,128-133,141-147
1s9e d1s9eb_ B:27-45,46-50,70-76,128-133,141-147
1jla d1jlaa2 A:27-45,46-50,70-76,128-134,140-147
1jlb d1jlba2 A:27-45,46-50,71-76,128-132,142-147
1qai d1qaia_ A:67-85,86-90,109-114,168-174,179-186
1rt5 d1rt5a2 A:27-45,46-50,70-76,128-132,142-147
1rt3 d1rt3b_ B:27-45,46-50,70-76,128-133,141-147
2vg5 d2vg5b1 B:1027-1045,1046-1050,1070-1076,1128-1133,1141-1147
1ikx d1ikxa2 A:27-45,46-50,70-76,128-133,141-147
1tkt d1tktb1 B:27-45,46-50,70-76,128-133,141-147
3drs d3drsa1 A:27-45,46-50,70-76,128-134,140-147
3c6t d3c6ta1 A:27-45,46-50,70-76,128-133,141-147
1tkz d1tkzb1 B:27-45,46-50,70-76,128-133,141-147
1dtq d1dtqb_ B:27-45,46-50,70-76,128-133,141-147
1rt4 d1rt4a2 A:27-45,46-50,70-76,128-132,142-147
1nnd d1nnda_ A:67-85,86-90,108-114,168-174,179-186
3c6u d3c6ua1 A:27-45,46-50,70-76,128-134,140-147
2b6a d2b6ab1 B:27-45,46-50,70-76,128-133,141-147
2rki d2rkia1 A:27-45,46-50,70-76,128-134,140-147
1jkh d1jkha2 A:27-45,46-50,70-76,128-132,142-147
1t05 d1t05b_ B:27-45,46-50,70-76,128-133,141-147
1s1x d1s1xa2 A:27-45,46-50,71-76,128-132,142-147
3drr d3drra1 A:27-45,46-50,70-76,128-135,138-147
1s1u d1s1ub1 B:27-45,46-50,70-76,128-134,140-147
1rw3 d1rw3a_ A:67-85,86-90,108-114,168-173,180-186
1hqu d1hqua2 A:28-45,46-50,72-76,128-132,142-147
2r2s d2r2sa1 A:67-85,86-90,109-114,168-173,180-186
1qaj d1qajb_ B:67-85,86-90,108-114,168-176,180-186
2r2r d2r2ra1 A:67-85,86-90,109-114,168-172,181-186
1i6j d1i6ja_ A:67-85,86-90,108-114,168-172,181-186
2r2t d2r2ta1 A:67-85,86-90,109-114,168-172,181-186
1rt2 d1rt2a2 A:27-45,46-50,69-76,129-134,140-147
2fvp d2fvpa1 A:67-85,86-90,108-114,168-172,181-186
2fvq d2fvqa1 A:67-85,86-90,109-114,168-172,181-186
2fvr d2fvra1 A:67-85,86-90,109-114,168-172,181-186
2fvs d2fvsa1 A:67-85,86-90,108-114,168-172,181-186
2r2u d2r2ua1 A:67-85,86-90,109-114,168-172,181-186
2fjw d2fjwa1 A:67-85,86-90,108-114,168-172,181-186
1n4l d1n4la_ A:67-85,86-90,108-114,168-172,181-186
1rt1 d1rt1a2 A:27-45,46-50,68-76,129-133,141-147
1rt6 d1rt6a2 A:27-45,46-50,68-76,128-133,141-147
1jlf d1jlfa2 A:27-45,46-50,69-76,128-133,141-147
1c0u d1c0ua2 A:27-45,46-50,68-76,128-134,140-147
1n6q d1n6qa2 A:27-45,46-50,68-76,128-133,141-147
1tkx d1tkxa2 A:27-45,46-50,69-76,128-133,141-147
1uwb d1uwba2 A:27-45,46-50,71-75,129-134,140-147
1n5y d1n5ya2 A:27-45,46-50,68-76,128-133,141-147
1c1c d1c1ca2 A:27-45,46-50,69-76,128-133,141-147
1uwb d1uwbb_ B:27-45,46-50,69-76,128-133,141-147
1iky d1ikya2 A:27-45,46-50,69-76,128-133,141-147
1hnv d1hnvb_ B:27-45,46-50,69-76,128-133,141-147
3hvt d3hvta2 A:26-46,47-51,71-75,128-134,140-147
1ikw d1ikwa2 A:27-45,46-50,69-76,128-133,141-147
1ikv d1ikva2 A:27-45,46-50,69-76,128-133,141-147
1n5y d1n5yb_ B:27-45,46-50,68-76,128-133,141-147
1hni d1hnia2 A:27-45,46-50,71-75,128-133,141-147
1hqe d1hqea2 A:27-45,46-50,69-76,128-134,140-147
1n6q d1n6qb_ B:27-45,46-50,68-76,128-133,141-147
4. e.62.1 Heme iron utilization protein-like
Heme iron utilization protein-like 2 domains; d1 - 3-helical bundle similar to the homeodomain-like fold; d2 - 6-stranded beta-barrel capped by two helices at one end, similar topology to the PH-like fold
2hq2 d2hq2a1 A:48-60,96-102,131-139,239-247,248-256
2j0p d2j0pa1 A:50-62,98-105,133-141,242-250,251-259
1u9t d1u9ta1 A:48-60,96-103,131-139,239-247,248-256
2j0r d2j0ra1 A:50-62,98-105,133-141,241-250,251-259
5. d.172.1 gp120 core
gp120 core unusual fold
1g9m d1g9mg_ G:98-117,118-126,373-379,422-426,431-435
1gc1 d1gc1g_ G:98-117,118-126,373-379,422-426,431-435
1rzj d1rzjg_ G:98-117,118-126,373-379,422-426,431-435
2ny5 d2ny5g1 G:98-117,119-126,373-379,422-426,431-435
1g9n d1g9ng_ G:98-117,118-126,373-379,422-426,431-435
1rzk d1rzkg_ G:98-117,118-126,373-379,422-426,431-435
2ny6 d2ny6a1 A:98-117,119-126,373-379,422-426,431-435
2nxy d2nxya1 A:98-117,119-126,373-379,422-426,431-435
2ny0 d2ny0a1 A:98-117,119-126,373-379,422-426,431-435
2ny2 d2ny2a1 A:98-117,119-126,373-379,422-426,431-435
2b4c d2b4cg1 G:98-117,119-126,373-379,422-426,431-435
2i60 d2i60p1 P:98-117,119-128,373-379,422-426,431-435
2i5y d2i5yg1 G:98-117,119-128,373-379,422-426,431-435
1yyl d1yylp1 P:1098-1117,1118-1128,1373-1379,1422-1426,1431-1435
1yym d1yymp1 P:1098-1117,1118-1128,1373-1379,1422-1426,1431-1435
2i60 d2i60g1 G:98-117,118-128,373-379,422-426,431-435
1yyl d1yylg1 G:98-117,118-128,373-379,422-426,431-435
6. b.69.12 Sema domain irregular 7-bladed beta-propeller with a large insertion in the fifth blade !
7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
1q47 d1q47a_ A:35-43,44-49,456-462,498-506,507-514
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 976 (enumeration index: query2631) of S5
3mee A:27-45,46-50,70-76,128-134,140-147
2iaj A:27-45,46-50,69-76,129-133,141-147
2fy3 A:281-292,391-399,547-552,559-568,569-578
3fot A:133-149,275-285,455-470,475-484,485-496
3isn C:27-45,46-50,70-76,128-134,140-147
2fy2 A:281-292,391-399,547-552,559-568,569-578
3kk3 A:27-45,46-50,70-76,128-133,141-147
3jsm B:27-45,46-50,70-76,128-133,141-147
3jsm A:27-45,46-50,70-76,128-133,141-147
3eq2 B:110-168,176-185,191-200,329-335,383-391
3eq2 A:110-168,176-184,191-199,329-336,384-390
3se8 G:98-117,119-124,373-379,422-426,431-435
3klh A:27-45,46-50,69-76,128-133,141-147
3klh B:27-45,46-50,68-76,128-133,141-147
3jyt B:27-45,46-50,70-76,128-133,141-147
3f79 A:148-168,176-185,191-200,328-335,383-392
3f79 F:147-168,176-185,191-200,328-335,383-392
3f79 E:147-168,176-185,191-200,328-335,383-392
3f79 C:147-168,176-185,191-199,328-335,383-392
3f79 B:147-168,176-185,191-200,328-335,383-392
3f79 D:149-168,176-185,191-199,328-335,383-392
2rcu A:334-345,441-449,596-602,609-618,619-628
2rcu B:334-345,441-449,596-602,609-618,619-628
3ith A:27-45,46-50,70-76,128-134,140-147
3jwd A:98-117,119-124,373-379,422-426,431-435
2wom A:27-45,46-50,70-76,128-133,141-147
3fp0 A:133-149,272-285,455-470,476-484,485-496
3f7a A:110-168,178-185,191-200,328-336,383-392
3f7a B:110-168,176-185,191-200,328-336,383-392
3m8p B:27-45,46-50,70-76,128-133,141-147
3se9 G:98-117,119-124,373-379,422-426,431-435
3ngb G:98-117,118-124,373-379,422-426,431-435
2won A:27-45,46-50,70-76,128-133,141-147
3lam A:27-45,46-50,70-76,128-133,141-147
3isu A:1538-1546,1547-1552,1561-1569,1606-1610,1612-1616
2deb A:334-345,441-449,596-602,609-618,619-628
2deb B:334-345,441-449,596-602,609-618,619-628
3i0r A:27-45,46-50,70-76,128-134,140-147
3lal A:27-45,46-50,70-76,129-134,140-147
3lan A:27-45,46-50,70-76,128-134,140-147
2fyo A:334-345,441-449,597-602,609-618,619-628
3jwo A:98-117,119-124,373-379,422-426,431-435
3lqa G:97-116,118-123,367-373,421-425,430-434
3dmj A:27-45,46-50,71-76,128-134,140-147
3lak A:27-45,46-50,70-76,129-134,140-147
2fy5 A:281-292,391-399,547-552,559-568,569-578
2ykm B:27-45,46-50,69-76,128-133,141-147
2jle B:27-45,46-50,70-76,128-134,140-147
2h4t A:334-345,441-449,596-602,609-618,619-628
2h4t B:334-345,441-449,596-602,609-618,619-628
3ig1 A:27-45,46-50,69-76,128-134,140-147
3i0s A:27-45,46-50,70-76,128-133,141-147
2hnd A:27-45,46-50,70-76,128-134,140-147
2hnd B:27-45,46-50,70-76,128-133,141-147
3meg A:27-45,46-50,70-76,128-134,140-147
3es2 B:145-168,176-186,191-198,330-335,382-390
3es2 A:147-168,176-186,191-200,330-335,382-391
2fy4 A:281-292,391-399,547-552,559-568,569-578
3klf E:27-45,46-50,70-76,128-133,141-147
3klf I:27-45,46-50,70-76,128-133,141-147
3klf M:27-45,46-50,70-76,128-133,141-147
3klf A:27-45,46-50,70-76,128-133,141-147
2fw3 A:334-345,441-449,596-602,609-618,619-628
2ze2 A:27-45,46-50,71-76,128-134,140-147
3dlk A:27-45,46-50,70-76,128-134,140-147
3dm2 A:27-45,46-50,71-76,128-133,141-147
3dlg A:27-45,46-50,71-76,128-134,140-147
3dle A:27-45,46-50,70-76,129-134,140-147
3bgr A:27-45,46-50,70-76,129-134,140-147
3dok A:27-45,46-50,71-76,128-133,141-147
2vg6 A:27-45,46-50,68-76,128-134,140-147
2i5j A:27-45,46-50,71-76,129-134,140-147
2be2 A:27-45,46-50,70-76,128-135,138-147
2zd1 A:27-45,46-50,70-76,129-134,140-147