1. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1jwy d1jwyb_ B:3-19,61-70,95-108,121-129,133-140
1jx2 d1jx2b_ B:3-18,61-70,95-108,119-129,133-140
2aka d2akab1 B:6-23,67-76,93-110,118-127,131-137
2. d.154.1 DmpA/ArgJ-like convergent similarity to the Ntn amidohydrolases !
DmpA/ArgJ-like duplication of beta(3)-alpha-beta-alpha motif; 4 layers: alpha/beta/beta/alpha
1vz7 d1vz7b_ B:236-259,264-272,275-289,358-367,371-379
1vz8 d1vz8b_ B:236-259,264-272,275-289,358-367,371-379
1vz7 d1vz7c_ C:236-259,264-273,275-289,358-367,370-379
1vz7 d1vz7a_ A:236-259,264-272,275-289,358-367,371-379
1vz8 d1vz8d_ D:236-259,264-272,275-289,358-367,371-379
1vz8 d1vz8c_ C:236-259,264-272,275-289,358-367,368-379
1vz6 d1vz6a_ A:236-259,264-272,275-289,358-367,371-379
1vz6 d1vz6b_ B:236-259,264-272,275-289,358-367,371-379
1vz8 d1vz8a_ A:236-259,264-272,275-289,358-367,371-379
1vz7 d1vz7d_ D:236-259,264-272,275-289,358-367,368-379
1vz7 d1vz7c_ C:236-259,264-273,289-299,358-367,370-379
1vz7 d1vz7a_ A:236-259,264-272,289-299,358-367,371-379
1vz8 d1vz8d_ D:236-259,264-272,289-299,358-367,371-379
1vz7 d1vz7b_ B:236-259,264-272,289-299,358-367,371-379
1vz8 d1vz8b_ B:236-259,264-272,289-299,358-367,371-379
1vz6 d1vz6b_ B:236-259,264-272,289-299,358-367,371-379
1vz7 d1vz7d_ D:236-259,264-272,289-299,358-367,368-379
1vz6 d1vz6a_ A:236-259,264-272,289-299,358-367,371-379
1vz8 d1vz8a_ A:236-259,264-272,289-299,358-367,371-379
1vz8 d1vz8c_ C:236-259,264-272,289-299,358-367,368-379
1vz7 d1vz7b_ B:236-259,264-272,345-358,358-367,371-379
1vz8 d1vz8d_ D:236-259,264-272,344-358,358-367,371-379
1vz7 d1vz7a_ A:236-259,264-272,344-358,358-367,371-379
1vz7 d1vz7c_ C:236-259,264-273,344-358,358-367,370-379
1vz8 d1vz8b_ B:236-259,264-272,344-358,358-367,371-379
1vz6 d1vz6a_ A:236-259,264-272,344-358,358-367,371-379
1vz6 d1vz6b_ B:236-259,264-272,344-358,358-367,371-379
1vz8 d1vz8c_ C:236-259,264-272,344-358,358-367,368-379
1vz8 d1vz8a_ A:236-259,264-272,344-358,358-367,371-379
3. d.104.1 Class II aaRS and biotin synthetases
Class II aaRS and biotin synthetases contains large mixed beta-sheet
1usy d1usyd_ D:102-122,123-132,173-187,219-224,235-245
1usy d1usyb_ B:102-122,123-132,173-187,219-224,235-245
1usy d1usyc_ C:102-122,123-132,173-187,219-224,235-245
1usy d1usya_ A:102-122,123-132,173-187,219-224,235-245
4. b.52.2 ADC-like
Double psi beta-barrel barrel, closed; n=6, S=10; complex topology with crossover (psi) loops
2dmr d2dmra1 A:321-328,636-643,672-680,709-715,757-764
3dmr d3dmra1 A:321-328,636-643,672-680,709-715,757-764
1e60 d1e60a1 A:321-328,636-643,672-680,709-715,757-764
1e60 d1e60c1 C:321-328,636-643,672-680,709-715,757-764
1e18 d1e18a1 A:321-328,636-643,672-680,709-715,757-764
1e5v d1e5vc1 C:321-328,636-643,672-680,709-715,757-764
1h5n d1h5na1 A:321-328,636-643,672-680,709-715,757-764
1dmr d1dmra1 A:321-328,636-643,672-680,709-715,757-764
1h5n d1h5nc1 C:321-328,636-643,672-680,709-715,757-764
1e61 d1e61c1 C:321-328,636-643,672-680,709-715,757-764
1e5v d1e5va1 A:321-328,636-643,672-680,709-715,757-764
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1025 (enumeration index: query265.558) of S5
2vzk H:236-259,264-272,289-299,358-367,371-379
2vzk D:236-259,264-272,289-299,358-367,371-379
2vzk B:236-259,264-272,275-289,358-367,371-379
2vzk D:236-259,264-272,275-289,358-367,371-379
2vzk F:236-259,264-272,289-299,358-367,371-379
2vzk H:236-259,264-272,275-289,358-367,371-379
2vzk F:236-259,264-272,275-289,358-367,371-379
2vzk B:236-259,264-272,289-299,358-367,371-379
2ivf A:445-452,842-848,877-885,914-919,967-976
2x2e D:6-24,67-76,93-110,119-127,131-138
2x2e A:8-24,67-76,93-110,119-127,131-138
3it4 D:256-279,284-292,309-319,369-378,382-390
3it4 B:256-279,284-292,309-319,369-378,382-390
3it4 D:256-279,284-292,295-309,369-378,382-390
3it4 B:256-279,284-292,295-309,369-378,382-390
3hri D:179-198,203-211,256-270,304-309,319-328
2v4i D:236-259,264-272,275-289,351-360,364-372
2v4i B:236-259,264-272,337-351,351-360,364-372
2v4i D:236-259,264-272,289-299,351-360,364-372
2v4i F:236-259,264-272,275-289,351-360,364-372
2v4i D:236-259,264-272,337-351,351-360,364-372
2v4i F:236-259,264-272,337-351,351-360,364-372
2v4i B:236-259,264-272,275-289,351-360,364-372
2v4i F:236-259,264-272,289-299,351-360,364-372
2v4i B:236-259,264-272,289-299,351-360,364-372
2v4i H:236-259,264-272,289-299,351-360,364-372
2v4i H:236-259,264-272,337-351,351-360,364-372
2v4i H:236-259,264-272,275-289,351-360,364-372
3it6 B:256-279,284-292,309-319,369-378,382-390
3it6 B:256-279,284-292,295-309,369-378,382-390
3it6 D:256-279,284-292,309-319,369-378,382-390
3it6 D:256-279,284-292,295-309,369-378,382-390
3p7l A:196-210,298-305,386-405,475-482,496-505
2yep F:236-259,264-272,289-299,358-367,371-379
2yep D:236-259,264-272,289-299,358-368,368-379
2yep F:236-259,264-272,275-290,358-367,371-379
2yep B:236-259,264-272,275-289,358-367,371-379
2yep H:236-259,264-272,275-289,358-367,371-379
2yep D:236-259,264-272,275-289,358-368,368-379
2yep B:236-259,264-272,289-299,358-367,371-379
2yep H:236-259,264-272,289-299,358-367,371-379
1vra B:257-282,287-295,298-312,376-385,389-397
1vra B:257-282,287-295,312-322,376-385,389-397