1. e.23.1 Acetyl-CoA synthetase-like
Acetyl-CoA synthetase-like 4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
1ry2 d1ry2a_ A:149-156,160-165,355-360,365-380,381-388
1amu d1amub_ B:56-61,62-66,224-229,234-248,249-254
1amu d1amua_ A:56-61,62-66,224-229,234-248,249-254
1lci d1lcia_ A:40-46,47-52,235-240,245-259,260-265
1ba3 d1ba3a_ A:40-46,47-52,235-240,245-259,260-265
1pg3 d1pg3b_ B:93-100,104-109,300-304,309-324,326-332
1pg4 d1pg4a_ A:93-100,104-109,300-304,309-324,326-332
1pg3 d1pg3a_ A:93-100,104-109,300-304,309-324,326-332
1pg4 d1pg4b_ B:93-100,104-109,300-304,309-324,326-332
1ult d1ulta_ A:35-41,44-49,218-225,235-244,244-252
1v25 d1v25b_ B:35-41,44-49,218-225,235-244,244-252
1ult d1ultb_ B:35-41,44-49,218-225,235-244,244-252
1mdb d1mdba_ A:42-47,48-52,222-229,242-250,250-256
1mdf d1mdfa_ A:42-47,48-52,222-229,242-250,250-256
1v25 d1v25a_ A:35-41,44-49,218-225,235-244,244-252
1v26 d1v26b_ B:35-41,44-49,218-225,235-244,244-252
1t5d d1t5dx_ X:19-25,26-31,197-202,207-222,223-228
1mdb d1mdba_ A:42-47,48-52,222-229,234-241,250-256
1md9 d1md9a_ A:42-47,48-52,224-229,242-250,251-256
1t5h d1t5hx_ X:19-25,26-31,197-202,207-222,223-228
1mdf d1mdfa_ A:42-47,48-52,222-229,234-241,250-256
3cw9 d3cw9a1 A:19-25,26-31,197-202,207-222,223-228
3cw9 d3cw9b1 B:19-25,26-31,197-202,207-222,223-228
1v26 d1v26a_ A:35-41,43-49,220-225,235-244,245-251
2. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
2p6u d2p6ua4 A:205-213,214-221,341-346,359-372,378-385
2p6r d2p6ra4 A:205-213,214-221,341-346,359-372,378-385
3. c.1.11 Enolase C-terminal domain-like binds metal ion (magnesium or manganese) in conserved site inside barrel ! N-terminal alpha+beta domain is common to this superfamily !
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1e9i d1e9ic1 C:146-156,164-173,363-369,377-387,389-393
1one d1oneb1 B:148-157,166-174,367-373,381-391,394-399
1te6 d1te6a1 A:146-155,164-173,364-370,378-388,391-396
1one d1onea1 A:148-157,166-174,367-373,381-391,394-399
4. d.178.1 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains unusual fold
1mlw d1mlwa_ A:318-324,325-331,350-354,355-363,372-376
2pah d2pahb_ B:331-337,338-344,362-367,368-376,384-390
2phm d2phma2 A:331-337,338-344,362-367,368-375,384-390
1phz d1phza2 A:331-337,338-344,362-367,368-375,384-390
2pah d2paha_ A:331-337,338-344,362-367,368-375,384-390
1mmk d1mmka_ A:331-337,338-344,362-367,368-375,384-390
1mmt d1mmta_ A:331-337,338-344,362-367,368-375,384-390
4pah d4paha_ A:331-337,338-344,362-367,368-375,384-390
1tdw d1tdwa_ A:331-337,338-344,362-367,368-375,384-390
3pah d3paha_ A:331-337,338-344,362-367,368-375,384-390
1pah d1paha_ A:331-337,338-344,362-367,368-375,384-390
1tg2 d1tg2a_ A:331-337,338-344,362-367,368-375,384-390
2toh d2toha_ A:377-383,384-390,408-413,414-421,430-436
1ltz d1ltza_ A:185-191,192-198,217-222,223-230,239-245
1ltv d1ltva_ A:185-191,192-198,217-222,223-230,239-245
6pah d6paha_ A:331-337,338-344,362-367,368-375,384-390
1dmw d1dmwa_ A:331-337,338-344,362-367,368-375,384-390
1lrm d1lrma_ A:331-337,338-344,362-367,368-375,384-390
1toh d1toha_ A:377-383,384-390,408-413,414-421,430-436
1ltu d1ltua_ A:185-191,192-198,217-222,223-230,239-245
1kw0 d1kw0a_ A:331-337,338-344,362-367,368-375,384-390
1j8u d1j8ua_ A:331-337,338-344,362-367,368-375,384-390
1j8t d1j8ta_ A:331-337,338-344,362-367,368-375,384-390
5pah d5paha_ A:331-337,338-344,362-367,368-375,384-390
5. c.26.1 Nucleotidylyl transferase
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
1gln d1glna2 A:154-162,163-170,201-206,209-224,228-233
2cuz d2cuza2 A:154-162,163-170,201-207,209-224,228-234
1n75 d1n75a2 A:154-162,163-170,201-207,209-224,228-234
2cv0 d2cv0a2 A:154-162,163-170,201-207,209-224,228-234
2cv1 d2cv1a2 A:154-162,163-170,201-207,209-224,228-234
1n77 d1n77b2 B:154-162,163-170,201-207,209-224,228-234
1n77 d1n77a2 A:154-162,163-170,201-207,209-224,228-234
1j09 d1j09a2 A:154-162,163-170,201-207,209-224,228-234
1n78 d1n78b2 B:154-162,163-170,201-207,209-224,228-234
1n78 d1n78a2 A:154-162,163-170,201-207,209-224,228-234
2dxi d2dxia2 A:154-162,163-170,201-207,209-224,228-234
2cv0 d2cv0b2 B:154-162,163-170,201-207,209-224,228-234
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 518 (enumeration index: query2664.2665) of S5
3dhv A:18-23,24-28,185-191,196-210,210-216
3e7w A:18-23,24-28,184-190,195-209,209-215
3fce A:18-23,24-28,185-191,196-210,210-216
2qw0 X:19-25,26-31,197-202,207-222,223-228
2p2j A:93-100,104-109,300-304,309-324,326-332
2p2j B:93-100,104-109,300-304,309-324,326-332
3iep A:40-46,47-52,235-240,245-259,260-265
2xsn A:407-413,414-420,438-443,444-451,460-466
2xsn B:407-413,414-420,438-443,444-451,460-466
2xsn C:407-413,414-420,438-443,444-451,460-466
2xsn D:407-413,414-420,438-443,444-451,460-466
3lgx A:16-21,22-26,183-188,194-208,208-213
3lgx D:17-21,22-26,183-188,194-208,208-213
3lgx B:16-21,22-26,183-188,194-208,208-213
3lgx C:16-21,22-26,183-188,194-208,208-213
3ier A:40-46,47-52,235-240,245-259,260-265
2v7b B:40-45,46-50,223-231,236-251,250-256
2v7b A:40-45,46-50,223-231,236-251,250-257
2wd9 C:67-74,76-82,253-260,265-280,280-287
2wd9 B:67-74,76-82,253-260,265-280,280-287
2wd9 A:67-74,76-82,253-260,265-280,280-287
2v28 A:168-174,175-181,200-205,206-213,222-228
2v28 B:168-174,175-181,200-205,206-213,222-228
3lnv A:26-33,34-40,207-212,217-232,233-238
2va8 B:201-210,214-221,350-356,372-385,391-398
2va8 A:201-210,214-221,350-356,372-385,391-398
3e7x A:18-23,24-28,184-190,195-209,209-215
2zj5 A:202-210,211-216,339-344,358-371,377-384
3dlp X:19-25,26-31,197-202,207-222,223-228
3ies A:40-46,47-52,235-240,245-259,260-265
3b7w A:67-73,77-82,253-260,265-280,280-287
2qvz X:19-25,26-31,197-202,207-222,223-228
2z41 A:206-210,211-216,344-349,358-369,378-383
3hfb A:318-324,325-331,350-354,355-362,372-377
3nyq A:20-25,26-30,175-182,187-202,202-208
2zj2 A:201-210,211-216,339-344,358-369,376-384
1vdz A:82-87,88-92,254-262,266-278,290-296
2vze C:67-74,76-82,253-260,265-280,280-287
2vze B:67-74,76-82,253-260,265-280,280-287
2vze A:67-74,76-82,253-260,265-280,280-287
2psn A:145-155,164-172,364-370,378-388,390-396
2psn B:146-155,164-172,364-370,378-388,391-396
3e53 A:21-28,34-40,210-216,221-236,238-242
3ipl A:16-21,22-26,203-208,213-227,228-233
3ipl B:16-21,22-26,203-208,213-227,228-233
3ipl C:16-21,22-26,203-208,213-227,228-233
2d1q A:42-48,49-54,235-242,247-261,261-267
3kxw A:26-33,34-40,208-212,217-232,234-238
2p2f A:93-100,104-109,300-304,309-324,326-332
2p2f B:93-100,104-109,300-304,309-324,326-332
3e2t A:319-325,326-332,351-355,356-363,373-378
3day A:67-73,77-82,253-260,265-280,280-287
2v27 A:168-174,175-181,200-205,206-213,222-228
2v27 B:168-174,175-181,200-205,206-213,222-228
2p2q A:93-100,104-109,300-304,309-324,326-332
2p2q B:93-100,104-109,300-304,309-324,326-332
2p20 B:93-100,104-109,300-304,309-324,326-332
2p20 A:93-100,104-109,300-304,309-324,326-332
3ivr A:24-29,30-34,201-207,213-227,227-232
3ivr B:24-29,30-34,201-207,213-227,227-233
3a9v A:39-45,46-51,225-229,234-249,251-255
3b97 A:145-155,164-172,364-370,378-388,390-396
3b97 B:146-155,164-172,364-370,378-388,391-396
2zj8 A:201-210,211-216,339-344,358-370,376-384
3fcc A:18-23,24-28,185-191,196-210,210-216
3cw8 X:19-25,26-31,197-202,207-222,223-228
3o84 B:45-50,51-55,229-236,249-257,257-263
3o84 A:45-50,51-55,229-236,249-257,257-263
3o84 B:45-50,51-55,229-236,241-248,257-263
3o84 A:45-50,51-55,229-236,241-248,257-263
3hf8 A:318-324,325-331,350-354,355-362,372-377
3ite A:32-39,46-52,220-224,230-244,245-250
3ite B:32-39,46-52,220-224,230-244,245-250
2xgj B:324-333,338-344,514-519,533-545,551-560
2xgj A:325-333,338-344,514-526,533-545,552-560
2p2m A:93-100,104-109,300-304,309-324,326-332
2p2m B:93-100,104-109,300-304,309-324,326-332
3l9o A:325-333,338-344,514-519,533-545,552-560
3pbk A:35-42,44-51,220-224,229-244,245-250
3pbk B:35-42,44-51,220-224,229-244,245-250
3hf6 A:318-324,325-331,350-354,355-362,372-377
2vsq A:481-486,487-491,648-653,658-672,673-678
3ni2 A:39-45,46-51,225-229,234-249,251-255
3p24 B:80-86,87-96,217-228,233-253,257-268
3c5e A:67-73,77-82,253-260,265-280,280-287
2d1s A:42-48,49-54,235-242,247-261,261-267
3l8c B:16-21,22-26,183-188,194-208,208-213
3l8c A:16-21,22-26,183-188,194-208,208-213
3a9u A:39-45,46-51,224-229,234-249,250-255
3o82 B:45-50,51-55,229-236,249-257,257-263
3o82 A:45-50,51-55,229-236,249-257,257-263
3o82 A:45-50,51-55,229-236,241-248,257-263
3o82 B:45-50,51-55,229-236,241-248,257-263
2d1t A:42-48,49-54,237-242,247-261,262-267
3o83 A:45-50,51-55,229-236,249-257,257-263
3o83 B:45-50,51-55,229-236,249-257,257-263
3o83 A:45-50,51-55,229-236,241-248,257-263
3o83 B:45-50,51-55,229-236,241-248,257-263
2qvy X:19-25,26-31,197-202,207-222,223-228
2d1r A:42-48,49-54,237-242,247-261,262-267
3nyr A:20-25,26-30,175-182,187-202,202-208
3eq6 B:67-74,76-82,253-260,265-280,280-287
3eq6 A:67-74,76-82,253-260,265-280,280-287
3gpc B:67-74,76-82,253-260,265-280,280-287
3gpc A:67-74,76-82,253-260,265-280,280-287
2qvx X:19-25,26-31,197-202,207-222,223-228
2zja A:201-210,211-216,339-344,358-370,376-384
2p2b A:93-100,104-109,300-304,309-324,326-332
2p2b B:93-100,104-109,300-304,309-324,326-332
3etc B:50-57,59-65,244-249,254-263,270-277
3etc A:50-57,59-65,242-249,254-263,269-277