1. b.81.1 Trimeric LpxA-like enzymes superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands !
Single-stranded left-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
1ssm d1ssmf_ F:36-50,55-71,93-101,101-120,148-154
1sst d1ssta_ A:36-50,55-71,70-89,101-120,143-149
1ssm d1ssma_ A:36-50,55-71,70-89,101-120,143-149
1ssm d1ssme_ E:36-50,55-71,70-89,101-120,143-149
1ssm d1ssmb_ B:36-50,55-71,70-89,101-120,143-149
1sst d1sstc_ C:36-50,55-71,70-89,101-120,143-149
1sst d1sstb_ B:36-50,55-71,70-89,101-120,143-149
1ssm d1ssmd_ D:36-50,55-71,70-89,101-120,143-149
1ssm d1ssmc_ C:36-50,55-71,70-89,101-120,143-149
1ssm d1ssmf_ F:36-50,55-71,70-89,101-120,143-149
1s80 d1s80e_ E:36-50,55-71,70-89,101-120,143-149
1t3d d1t3da_ A:40-54,59-75,74-93,105-124,147-153
1s80 d1s80c_ C:36-50,55-71,70-89,101-120,143-149
1s80 d1s80d_ D:36-50,55-71,70-89,101-120,143-149
1s80 d1s80a_ A:36-50,55-71,70-89,101-120,143-149
1s80 d1s80e_ E:36-50,55-71,70-89,101-120,148-154
1s80 d1s80d_ D:36-50,55-71,70-89,101-120,148-154
1t3d d1t3dc_ C:40-54,59-75,74-93,105-124,147-153
1s80 d1s80b_ B:36-50,55-71,70-89,101-120,143-149
1s80 d1s80f_ F:36-50,55-71,70-89,101-120,143-149
1ssq d1ssqa_ A:36-50,55-71,70-89,101-120,144-149
1ssm d1ssme_ E:36-50,55-71,70-89,101-120,148-154
1t3d d1t3da_ A:40-54,59-75,74-93,105-124,152-158
1s80 d1s80f_ F:36-50,55-71,70-89,101-120,148-154
1t3d d1t3db_ B:40-54,59-75,74-93,105-124,147-153
1sst d1sstc_ C:36-50,55-71,70-89,101-120,148-154
1s80 d1s80a_ A:36-50,55-71,70-89,101-120,148-154
1s80 d1s80c_ C:36-50,55-71,70-89,101-120,148-154
1ssq d1ssqd_ D:36-50,55-71,70-89,101-120,143-149
1ssm d1ssmb_ B:36-50,55-71,70-89,101-120,148-154
1t3d d1t3dc_ C:40-54,59-75,74-93,105-124,152-158
1s80 d1s80b_ B:36-50,55-71,70-89,101-120,148-154
1ssm d1ssma_ A:36-50,55-71,70-89,101-120,148-154
1t3d d1t3db_ B:40-54,59-75,74-93,105-124,152-158
1ssm d1ssmf_ F:36-50,55-71,70-89,101-120,148-154
1ssm d1ssmc_ C:36-50,55-71,70-89,101-120,148-154
1sst d1ssta_ A:36-50,55-71,70-89,101-120,148-154
1ssm d1ssmd_ D:36-50,55-71,70-89,101-120,148-154
1ssq d1ssqa_ A:36-50,55-71,70-89,101-120,148-154
1ssq d1ssqd_ D:36-50,55-71,70-89,101-120,148-154
2. c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
Aminoacid dehydrogenase-like, N-terminal domain core: 3 layers: a/b/a; parallel beta-sheet of 4 strands; 2134
1hrd d1hrda2 A:1-16,18-33,46-54,99-118,121-129
1hrd d1hrdb2 B:1-16,18-33,46-54,99-118,121-130
1hrd d1hrdc2 C:1-16,18-33,46-54,99-118,121-130
3. c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
S-adenosyl-L-methionine-dependent methyltransferases core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
2py6 d2py6a1 A:17-33,169-180,182-199,371-387,390-397
2py6 d2py6a1 A:17-33,161-170,182-199,371-387,390-397
4. a.98.1 R1 subunit of ribonucleotide reductase, N-terminal domain
R1 subunit of ribonucleotide reductase, N-terminal domain multihelical consists of two all-alpha subdomains ! subdomain 1 (residues 10-100) is a 4-helical bundle
2bq1 d2bq1f1 F:58-70,81-96,125-139,141-155,156-160
2bq1 d2bq1e1 E:58-70,81-96,125-139,141-155,156-160
1peq d1peqa1 A:58-70,81-96,125-139,141-155,156-160
1pem d1pema1 A:58-70,81-96,125-139,141-155,156-160
1peo d1peoa1 A:58-70,81-96,125-139,141-155,156-160
5. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1zs2 d1zs2a2 A:26-40,54-75,76-90,261-279,281-286
1mw0 d1mw0a2 A:26-40,54-75,76-90,261-279,281-286
1jgi d1jgia2 A:26-40,54-75,76-90,261-279,281-286
6. d.294.1 EndoU-like similarity to the RNase A-like superfamily (
EndoU-like comprises several helices and two three-stranded antiparallel beta-sheets; similar architecture to the RNase A-like fold (scop_cf 54075)
2c1w d2c1wb1 B:95-112,131-145,158-166,234-250,274-287
2c1w d2c1wa1 A:95-113,131-145,158-166,234-250,274-287
7. d.178.1 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains unusual fold
1toh d1toha_ A:296-307,342-357,360-377,414-421,430-436
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1197 (enumeration index: query289.2059) of S5
1zx4 A:192-200,206-221,223-235,248-274,276-281
2xsn C:326-337,372-387,390-407,444-451,460-466
2xsn B:326-337,372-387,390-407,444-451,460-466
2xsn A:326-337,372-387,390-407,444-451,460-466
2xsn D:326-337,372-387,390-407,444-451,460-466
3fd9 B:38-46,49-61,71-81,85-99,108-114
3fd9 C:38-46,49-61,71-81,85-99,108-114
3fd9 A:38-46,49-61,71-81,85-99,108-114
2xax C:124-136,168-184,185-203,208-218,462-469
3mc4 A:42-56,61-77,76-95,107-126,149-155
3mc4 A:42-56,61-77,99-107,107-126,154-160
3mc4 B:42-56,61-77,76-95,107-126,150-155
3mc4 A:42-56,61-77,76-95,107-126,154-160
3mc4 B:42-56,61-77,76-95,107-126,154-160
3mc4 B:42-56,61-77,99-107,107-126,154-160
3if8 B:411-440,443-452,456-482,484-502,509-514
3h4z B:157-166,333-353,356-370,1021-1044,1090-1096
3gvd G:40-54,59-75,74-93,105-124,147-153
3gvd D:40-54,59-75,74-93,105-124,147-153
3gvd H:40-54,59-75,74-93,105-124,152-158
3gvd C:40-54,59-75,74-93,105-124,152-158
3gvd G:40-54,59-75,74-93,105-124,152-158
3gvd F:40-54,59-75,74-93,105-124,152-158
3gvd D:40-54,59-75,74-93,105-124,152-158
3gvd K:40-54,59-75,74-93,105-124,147-153
3gvd A:40-54,59-75,74-93,105-124,152-158
3gvd F:40-54,59-75,74-93,105-124,147-153
3gvd A:40-54,59-75,74-93,105-124,147-153
3gvd B:40-54,59-75,74-93,105-124,152-158
3gvd E:40-54,59-75,74-93,105-124,147-153
3gvd I:40-54,59-75,74-93,105-124,147-153
3gvd I:40-54,59-75,74-93,105-124,152-158
3gvd J:40-54,59-75,74-93,105-124,152-158
3gvd L:40-54,59-75,74-93,105-124,152-158
3gvd K:40-54,59-75,74-93,105-124,152-158
3gvd E:40-54,59-75,74-93,105-124,152-158
3gvd H:40-54,59-75,74-93,105-124,147-153
3gvd C:40-54,59-75,74-93,105-124,147-153
3gvd J:40-54,59-75,74-93,105-124,147-153
3gvd L:40-54,59-75,74-93,105-124,147-153
3gvd B:40-54,59-75,74-93,105-124,147-153
3gvd I:40-54,59-75,97-105,105-124,152-158
3iyl W:26-36,80-104,114-128,130-138,155-160