1. c.51.1 Class II aaRS ABD-related Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 1ati d1atia1 A:400-406,439-451,453-459,475-483,484-492 1wu7 d1wu7b1 B:333-340,370-382,384-390,397-405,406-414 1adj d1adjc1 C:330-336,365-377,379-385,392-400,401-409 1ady d1adyc1 C:330-336,365-377,379-385,392-400,401-409 1adj d1adja1 A:330-336,365-377,379-385,392-400,401-409 1ady d1adya1 A:330-336,365-377,379-385,392-400,401-409 1ady d1adyd1 D:330-336,365-377,379-385,392-400,401-409 1ady d1adyb1 B:330-336,365-377,379-385,392-400,401-409 1adj d1adjb1 B:330-336,365-377,379-385,392-400,401-409 1adj d1adjd1 D:330-336,365-377,379-385,392-400,401-409 1ati d1atib1 B:400-406,439-451,453-459,475-483,484-492 1h4t d1h4ta1 A:289-295,331-343,345-351,358-365,367-374 1ggm d1ggma1 A:400-406,439-451,453-459,475-483,484-492 2el9 d2el9d1 D:330-336,368-380,382-388,395-403,404-412 1kmn d1kmnc1 C:330-336,368-380,382-388,395-403,404-412 2el9 d2el9a1 A:330-336,368-380,382-388,395-403,404-412 1h4s d1h4sa1 A:289-296,331-343,345-352,358-365,367-374 1h4v d1h4vb1 B:330-336,365-377,379-385,392-400,401-409 2el9 d2el9c1 C:330-336,368-380,382-388,395-403,404-412 1kmm d1kmmb1 B:330-336,368-380,382-388,395-403,404-412 1htt d1httd1 D:330-336,368-380,382-388,395-403,404-412 1htt d1httc1 C:330-336,368-380,382-388,395-403,404-412 1kmm d1kmma1 A:330-336,368-380,382-388,395-403,404-412 1wu7 d1wu7a1 A:333-340,370-382,384-390,397-405,406-414 2el9 d2el9b1 B:330-336,368-380,382-388,395-403,404-412 1h4t d1h4td1 D:289-295,331-343,345-351,358-365,367-374 1hc7 d1hc7a1 A:289-295,331-343,345-351,358-365,367-374 1htt d1htta1 A:330-336,368-380,382-388,395-403,404-412 1kmm d1kmmd1 D:330-336,368-380,382-388,395-403,404-412 1hc7 d1hc7c1 C:289-295,331-343,345-351,358-365,367-374 1htt d1httb1 B:330-336,368-380,382-388,395-403,404-412 1kmn d1kmna1 A:330-336,368-380,382-388,395-403,404-412 1kmm d1kmmc1 C:330-336,368-380,382-388,395-403,404-412 1hc7 d1hc7d1 D:289-295,331-343,345-351,358-365,367-374 1h4q d1h4qa1 A:289-296,331-343,345-352,358-365,367-374 1g5h d1g5ha1 A:356-362,398-410,412-418,425-433,434-442 1evk d1evkb1 B:541-547,577-589,591-597,605-611,613-620 1h4t d1h4tc1 C:289-295,331-343,345-351,358-365,367-374 1hc7 d1hc7b1 B:289-295,331-343,345-351,358-365,367-374 1h4t d1h4tb1 B:289-295,331-343,345-351,358-365,367-374 1kmn d1kmnd1 D:330-336,368-380,382-388,395-403,404-412 1h4q d1h4qb1 B:289-295,331-343,345-351,358-365,367-374 1b76 d1b76a1 A:400-406,439-451,453-459,476-483,484-491 1evk d1evka1 A:541-547,577-589,591-597,605-611,613-620 1g5i d1g5ib1 B:356-362,398-410,412-418,425-433,434-442 1kmn d1kmnb1 B:330-336,368-380,382-388,395-403,404-412 1h4s d1h4sb1 B:289-295,331-343,345-351,358-365,367-374 1g5h d1g5hc1 C:356-362,398-410,412-418,425-433,434-442 1g5i d1g5ia1 A:356-362,398-410,412-418,425-433,434-442 1g5i d1g5ic1 C:356-362,398-410,412-418,425-433,434-442 2g4c d2g4ca1 A:382-388,424-436,438-444,451-459,460-468 2g4c d2g4cb1 B:382-388,424-436,438-444,451-459,460-468 1b76 d1b76b1 B:400-406,439-451,453-459,476-483,484-491 1nj1 d1nj1a1 A:296-302,337-349,351-357,364-372,373-381 1g5h d1g5hb1 B:356-362,398-410,412-418,425-433,434-442 1evl d1evla1 A:541-547,577-589,591-597,605-611,613-620 1nj5 d1nj5a1 A:296-302,337-349,351-357,364-372,373-381 1evl d1evld1 D:541-547,577-589,591-597,605-611,613-620 1qe0 d1qe0a1 A:331-337,367-379,381-387,394-402,403-411 1qe0 d1qe0b1 B:331-337,367-379,381-387,394-402,403-411 1fyf d1fyfb1 B:541-547,577-589,591-597,605-611,613-620 1nj8 d1nj8a1 A:280-286,320-332,334-340,347-355,356-364 1fyf d1fyfa1 A:541-547,577-589,591-597,605-611,613-620 1evl d1evlb1 B:541-547,577-589,591-597,605-611,613-620 1nj8 d1nj8c1 C:280-286,320-332,334-340,347-355,356-364 1evl d1evlc1 C:541-547,577-589,591-597,605-611,613-620 1nj6 d1nj6a1 A:296-302,337-349,351-357,364-372,373-381 1g5h d1g5hd1 D:356-362,398-410,412-418,425-433,434-442 1g5i d1g5id1 D:356-362,398-410,412-418,425-433,434-442 1nj2 d1nj2a1 A:296-302,337-349,351-357,364-372,373-381 1qf6 d1qf6a1 A:541-547,577-589,591-597,605-611,613-620 1kog d1kogh1 H:541-547,577-589,591-597,605-611,613-620 1kog d1kogg1 G:541-547,577-589,591-597,605-611,613-620 2g4c d2g4cd1 D:382-390,424-436,438-445,451-459,460-468 1kog d1kogc1 C:541-547,577-589,591-597,605-611,613-620 2g4c d2g4cc1 C:382-390,424-436,438-445,451-459,460-468 1kog d1kogd1 D:541-547,577-589,591-597,605-611,613-620 1kog d1kogb1 B:541-547,577-589,591-597,605-611,613-620 1kog d1koga1 A:541-547,577-589,591-597,605-611,613-620 1kog d1kogf1 F:541-547,577-589,591-597,605-611,613-620 1kog d1koge1 E:541-547,577-589,591-597,605-611,613-620 1nj8 d1nj8d1 D:280-286,320-332,334-340,347-355,356-364 1nj8 d1nj8b1 B:280-286,320-332,334-340,347-355,356-364 2cxh d2cxha1 A:15-21,51-63,65-74,75-85,91-100 1nyq d1nyqb1 B:547-553,584-596,598-604,612-618,622-627 1nyr d1nyra1 A:547-553,584-596,598-604,612-618,622-627 1ggm d1ggmb1 B:400-406,439-451,453-459,477-483,484-490 1nyq d1nyqa1 A:547-553,584-596,598-604,612-618,623-627 1v95 d1v95a_ A:10-17,48-60,62-67,77-82,87-91 1w94 d1w94a1 A:1-6,35-44,45-54,55-65,67-80 1w94 d1w94b1 B:1-6,35-44,45-54,55-65,67-80 2. c.72.3 CoaB-like combination of the Rossmann-like and Ribokinase-like topologies; mixed beta-sheet of 8 strands, order 32145678, strand 7 is antiparallel to the rest ! Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites 1u7w d1u7wb_ B:322-329,333-346,348-353,368-374,375-381 1u7w d1u7wc_ C:322-330,333-346,348-354,367-374,375-382 1u7z d1u7zc_ C:322-331,333-346,348-355,366-374,375-384 1u7z d1u7zb_ B:322-331,333-346,348-355,366-374,375-384 1u80 d1u80a_ A:322-331,333-346,348-355,366-374,375-384 1u7z d1u7za_ A:322-331,333-346,348-355,365-374,375-385 1u7w d1u7wa_ A:322-331,333-346,348-355,369-374,375-380 1u80 d1u80c_ C:322-331,333-346,348-355,365-374,375-385 1u80 d1u80b_ B:322-331,333-346,348-355,365-374,375-385 1u7u d1u7ua_ A:322-328,333-346,348-353,366-374,375-384 1p9o d1p9oa_ A:225-231,235-251,253-259,266-272,273-279 1p9o d1p9ob_ B:225-231,235-251,253-259,266-272,273-279 3. c.72.1 Ribokinase-like has extra strand located between strands 2 and 3 ! Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites 2f02 d2f02a1 A:180-185,200-211,218-225,227-234,235-242 2dcn d2dcnf1 F:189-194,206-218,219-225,228-235,236-243 2abq d2abqa1 A:176-181,195-210,212-219,221-228,229-235 2dcn d2dcnh1 H:189-194,206-218,219-225,228-235,236-243 1c3q d1c3qa1 A:118-123,123-133,163-169,171-177,178-185 1wye d1wyef1 F:189-194,206-218,219-225,228-235,236-243 1esq d1esqb1 B:118-123,149-162,163-169,171-177,178-184 2dcn d2dcnl1 L:189-194,206-218,219-225,228-235,236-243 1esq d1esqc1 C:118-123,148-162,163-169,171-177,178-185 2dcn d2dcne1 E:189-194,206-218,219-225,228-235,236-243 2dcn d2dcnb1 B:189-194,206-218,219-225,228-235,236-243 2awd d2awda1 A:180-185,200-211,218-225,227-234,235-243 1v1a d1v1aa_ A:188-193,203-212,214-220,223-230,231-238 1ekq d1ekqb_ B:118-123,147-162,163-169,171-177,178-185 1esj d1esjc1 C:118-123,147-162,163-169,171-177,178-185 1c3q d1c3qa1 A:118-123,146-162,163-169,171-177,178-185 1v1b d1v1bd_ D:188-193,203-212,214-221,223-230,231-237 1ekq d1ekqa_ A:118-123,147-162,163-169,171-177,178-185 2dcn d2dcnc1 C:189-194,206-218,219-225,228-235,236-243 2dcn d2dcng1 G:189-194,206-218,219-225,228-235,236-243 1bx4 d1bx4a_ A:218-223,223-235,260-267,269-276,277-283 2dcn d2dcnk1 K:189-194,206-218,219-225,228-235,236-243 2dcn d2dcnj1 J:189-194,206-218,219-225,228-235,236-243 2abq d2abqa1 A:176-181,181-190,212-219,221-228,229-235 1v1b d1v1bb_ B:188-193,203-212,214-221,223-230,231-237 1ekk d1ekka_ A:118-123,146-162,163-169,171-177,178-185 1v1b d1v1bc_ C:188-193,203-212,214-221,223-230,231-237 2dcn d2dcnd1 D:189-194,206-218,219-225,228-235,236-243 1bx4 d1bx4a_ A:218-223,240-251,260-267,269-276,277-283 1wye d1wyea1 A:189-194,206-218,219-225,228-235,236-243 1c3q d1c3qc1 C:118-123,146-162,163-169,171-177,178-185 1v1b d1v1ba_ A:188-193,203-212,214-221,223-230,231-237 2dcn d2dcni1 I:189-194,206-218,219-225,228-235,236-243 2f02 d2f02a1 A:180-185,185-194,218-225,227-234,235-242 1u2x d1u2xb_ B:304-309,309-321,352-358,360-368,433-441 1wye d1wyed1 D:189-194,206-218,219-225,228-235,236-243 2dcn d2dcna1 A:189-194,206-218,219-225,228-235,236-243 1esj d1esja1 A:118-123,123-133,163-169,171-177,178-185 1wye d1wyee1 E:189-194,206-218,219-225,228-235,236-243 1ekk d1ekkb_ B:118-123,123-132,163-169,171-177,178-184 1gqt d1gqta_ A:182-187,201-216,218-225,227-234,235-241 1ekk d1ekka_ A:118-123,123-132,163-169,171-177,178-185 1ekk d1ekkb_ B:118-123,146-162,163-169,171-177,178-184 1gqt d1gqtc_ C:182-187,201-216,218-225,227-234,235-241 1u2x d1u2xa_ A:304-309,309-321,352-358,360-368,433-441 1vk4 d1vk4a_ A:168-173,185-197,199-206,207-213,215-221 1rks d1rksa_ A:182-187,201-216,218-225,227-234,235-241 1esj d1esjc1 C:118-123,123-132,163-169,171-177,178-185 1c3q d1c3qc1 C:118-123,123-132,163-169,171-177,178-185 1esj d1esja1 A:118-123,146-162,163-169,171-177,178-185 2awd d2awdb1 B:180-185,200-211,218-225,227-234,235-243 1v1a d1v1aa_ A:188-193,193-202,214-220,223-230,231-238 1v1a d1v1ab_ B:188-193,203-212,214-220,223-230,231-238 1vm7 d1vm7b_ B:173-178,195-207,209-216,218-225,226-232 1v1b d1v1bd_ D:188-193,193-202,214-221,223-230,231-237 1gqt d1gqtb_ B:182-187,201-216,218-225,227-234,235-241 1ua4 d1ua4a_ A:287-292,292-304,337-344,345-352,418-426 1vm7 d1vm7b_ B:173-178,178-191,209-216,218-225,226-232 1tz3 d1tz3b_ B:184-189,201-213,215-222,224-231,232-238 2abq d2abqb1 B:176-181,195-210,212-218,222-228,229-235 1esq d1esqa1 A:118-123,123-133,163-169,171-177,178-185 1rkd d1rkda_ A:182-187,201-216,218-225,227-234,235-241 1v1b d1v1bb_ B:188-193,193-202,214-221,223-230,231-237 1esq d1esqa1 A:118-123,150-162,163-169,171-177,178-185 1wye d1wyec1 C:189-194,206-218,219-225,228-235,236-243 1gqt d1gqtd_ D:182-187,201-216,218-225,227-234,235-241 1ekq d1ekqb_ B:118-123,123-132,163-169,171-177,178-185 1v1b d1v1bc_ C:188-193,193-202,214-221,223-230,231-237 1rk2 d1rk2d_ D:182-187,201-216,218-225,227-234,235-241 1l2l d1l2la_ A:290-295,295-307,340-346,348-355,421-429 1v1b d1v1ba_ A:188-193,193-202,214-221,223-230,231-237 1esq d1esqb1 B:118-123,123-132,163-169,171-177,178-184 1vm7 d1vm7a_ A:173-178,195-207,209-216,218-225,226-232 1esq d1esqc1 C:118-123,123-132,163-169,171-177,178-185 1u2x d1u2xb_ B:304-309,334-350,352-358,360-368,433-441 1vm7 d1vm7a_ A:173-178,178-191,209-216,218-225,226-232 2abq d2abqb1 B:176-181,181-190,212-218,222-228,229-235 1esj d1esjb1 B:118-123,146-162,163-169,171-177,178-185 1rka d1rkaa_ A:182-187,201-216,218-225,227-234,235-241 1wye d1wyeb1 B:189-194,206-218,219-225,228-235,236-243 1rk2 d1rk2b_ B:182-187,201-216,218-225,227-234,235-241 1esj d1esjb1 B:118-123,123-132,163-169,171-177,178-185 2awd d2awda1 A:180-185,185-194,218-225,227-234,235-243 1rk2 d1rk2c_ C:182-187,201-216,218-225,227-234,235-241 1v19 d1v19a_ A:188-193,203-212,214-221,223-230,231-239 2dcn d2dcnf1 F:189-194,194-203,219-225,228-235,236-243 1wye d1wyef1 F:189-194,194-203,219-225,228-235,236-243 1u2x d1u2xa_ A:304-309,334-350,352-358,360-368,433-441 1gc5 d1gc5a_ A:300-305,305-317,347-354,355-362,429-437 1rk2 d1rk2a_ A:182-187,201-216,218-225,227-234,235-241 1l2l d1l2la_ A:290-295,322-338,340-346,348-355,421-429 2dcn d2dcnl1 L:189-194,194-203,219-225,228-235,236-243 1ekq d1ekqa_ A:118-123,123-131,163-169,171-177,178-185 2dcn d2dcne1 E:189-194,194-203,219-225,228-235,236-243 1ua4 d1ua4a_ A:287-292,319-335,337-344,345-352,418-426 1gqt d1gqta_ A:182-187,187-196,218-225,227-234,235-241 1c3q d1c3qb1 B:118-123,123-132,163-169,171-177,178-184 2dcn d2dcnh1 H:189-194,194-203,219-225,228-235,236-243 1gqt d1gqtc_ C:182-187,187-196,218-225,227-234,235-241 1rks d1rksa_ A:182-187,187-196,218-225,227-234,235-241 1c3q d1c3qb1 B:118-123,146-162,163-169,171-177,178-184 1td2 d1td2b_ B:141-146,160-175,177-184,193-201,202-210 1v1s d1v1sd_ D:188-193,203-212,214-220,223-230,231-239 1gqt d1gqtb_ B:182-187,187-196,218-225,227-234,235-241 2ab8 d2ab8a1 A:218-223,223-235,273-279,282-291,293-302 1rkd d1rkda_ A:182-187,187-196,218-225,227-234,235-241 1v1a d1v1ab_ B:188-193,193-202,214-220,223-230,231-238 1v1s d1v1sf_ F:188-193,203-212,214-220,223-230,231-239 2dcn d2dcnb1 B:189-194,194-203,219-225,228-235,236-243 2dcn d2dcnc1 C:189-194,194-203,219-225,228-235,236-243 1vi9 d1vi9a_ A:141-146,160-175,177-184,193-201,202-210 1gqt d1gqtd_ D:182-187,187-196,218-225,227-234,235-241 1v1s d1v1se_ E:188-193,203-212,214-220,223-230,231-239 1v1s d1v1sb_ B:188-193,203-212,214-220,223-230,231-239 1v1s d1v1sa_ A:188-193,203-212,214-220,223-230,231-239 2dcn d2dcng1 G:189-194,194-203,219-225,228-235,236-243 2dcn d2dcnk1 K:189-194,194-203,219-225,228-235,236-243 2aa0 d2aa0a1 A:218-223,223-235,273-279,282-291,293-302 2a9z d2a9za1 A:218-223,223-235,273-279,282-291,293-302 1rk2 d1rk2d_ D:182-187,187-196,218-225,227-234,235-241 1v1s d1v1sc_ C:188-193,203-212,214-220,223-230,231-239 1vi9 d1vi9b_ B:141-146,160-175,177-184,193-201,202-210 2f02 d2f02b1 B:180-184,200-211,218-225,227-234,235-243 2dcn d2dcnj1 J:189-194,194-203,219-225,228-235,236-243 1v19 d1v19a_ A:188-193,193-202,214-221,223-230,231-239 2awd d2awdb1 B:180-185,185-194,218-225,227-234,235-243 1vi9 d1vi9c_ C:141-146,160-175,177-184,193-201,202-210 2a9y d2a9ya1 A:218-223,223-235,273-279,282-291,293-302 2dcn d2dcnd1 D:189-194,194-203,219-225,228-235,236-243 1gc5 d1gc5a_ A:300-305,329-345,347-354,355-362,429-437 1tz6 d1tz6b_ B:184-189,205-213,215-222,224-231,232-238 1rka d1rkaa_ A:182-187,187-196,218-225,227-234,235-241 2dcn d2dcni1 I:189-194,194-203,219-225,228-235,236-243 1tyy d1tyyb_ B:184-189,201-213,215-221,224-231,232-239 2dcn d2dcna1 A:189-194,194-203,219-225,228-235,236-243 1vk4 d1vk4a_ A:168-173,173-182,199-206,207-213,215-221 1v19 d1v19b_ B:188-193,203-212,214-220,222-230,231-239 1rk2 d1rk2b_ B:182-187,187-196,218-225,227-234,235-241 1rk2 d1rk2c_ C:182-187,187-196,218-225,227-234,235-241 1wye d1wyed1 D:189-194,194-203,219-225,228-235,236-243 1lik d1lika_ A:218-223,241-253,273-279,282-291,293-302 1tz3 d1tz3b_ B:184-189,189-198,215-222,224-231,232-238 1lik d1lika_ A:218-223,223-235,273-279,282-291,293-302 1wye d1wyee1 E:189-194,194-203,219-225,228-235,236-243 1rk2 d1rk2a_ A:182-187,187-196,218-225,227-234,235-241 1dgm d1dgma_ A:218-223,223-235,273-279,283-291,293-301 1lij d1lija_ A:218-223,241-253,273-279,282-291,293-302 1td2 d1td2b_ B:141-146,146-155,177-184,193-201,202-210 1wye d1wyec1 C:189-194,194-203,219-225,228-235,236-243 1lij d1lija_ A:218-223,223-235,273-279,282-291,293-302 1vi9 d1vi9a_ A:141-146,146-155,177-184,193-201,202-210 1tz6 d1tz6b_ B:184-189,189-198,215-222,224-231,232-238 1v1s d1v1sd_ D:188-193,193-202,214-220,223-230,231-239 1wye d1wyea1 A:189-194,194-203,219-225,228-235,236-243 1v1s d1v1sf_ F:188-193,193-202,214-220,223-230,231-239 1v1s d1v1se_ E:188-193,193-202,214-220,223-230,231-239 1td2 d1td2a_ A:141-146,160-175,177-184,192-201,202-211 2i6a d2i6ad1 D:218-223,223-235,260-266,270-276,277-283 1vi9 d1vi9b_ B:141-146,146-155,177-184,193-201,202-210 1v1s d1v1sb_ B:188-193,193-202,214-220,223-230,231-239 1v1s d1v1sa_ A:188-193,193-202,214-220,223-230,231-239 1vi9 d1vi9c_ C:141-146,146-155,177-184,193-201,202-210 1v1s d1v1sc_ C:188-193,193-202,214-220,223-230,231-239 2i6a d2i6ab1 B:218-223,223-235,260-266,270-276,277-283 1vi9 d1vi9d_ D:141-146,160-175,177-184,192-201,202-211 2i6a d2i6ad1 D:218-223,240-251,260-266,270-276,277-283 2i6a d2i6aa1 A:218-223,223-235,260-266,270-276,277-283 2i6a d2i6ab1 B:218-223,240-251,260-266,270-276,277-283 2i6a d2i6aa1 A:218-223,240-251,260-266,270-276,277-283 2ab8 d2ab8a1 A:218-223,248-265,273-279,282-291,293-302 2ajr d2ajra1 A:187-192,207-222,223-230,232-239,240-248 2f02 d2f02b1 B:180-184,185-194,218-225,227-234,235-243 2i6a d2i6ac1 C:218-223,223-235,260-266,270-276,277-283 1td2 d1td2a_ A:141-146,146-155,177-184,192-201,202-211 1kyh d1kyha_ A:142-149,167-180,181-187,189-195,197-203 2aa0 d2aa0a1 A:218-223,248-265,273-279,282-291,293-302 2abs d2absa1 A:218-223,223-235,273-279,282-291,293-302 2ax3 d2ax3a1 A:359-366,384-396,397-403,405-411,412-418 2a9z d2a9za1 A:218-223,248-265,273-279,282-291,293-302 1v19 d1v19b_ B:188-193,193-202,214-220,222-230,231-239 2a9y d2a9ya1 A:218-223,248-265,273-279,282-291,293-302 1wye d1wyeb1 B:189-194,194-203,219-225,228-235,236-243 1vi9 d1vi9d_ D:141-146,146-155,177-184,192-201,202-211 2i6a d2i6ac1 C:218-223,240-251,260-266,270-276,277-283 2ajr d2ajrb1 B:187-192,207-223,223-230,232-239,240-248 1ub0 d1ub0a_ A:132-137,151-166,168-174,181-189,190-198 1dgm d1dgma_ A:218-223,248-265,273-279,283-291,293-301 1tyy d1tyyb_ B:184-189,189-198,215-221,224-231,232-239 1lii d1liia_ A:218-223,223-235,273-278,282-291,293-302 1lii d1liia_ A:218-223,241-254,273-278,282-291,293-302 2fv7 d2fv7b1 B:194-199,213-228,230-237,239-246,251-255 2abs d2absa1 A:218-223,248-265,273-279,282-291,293-302 2fv7 d2fv7a1 A:194-199,213-228,230-237,239-246,251-255 1ub0 d1ub0a_ A:132-137,137-146,168-174,181-189,190-198 2fv7 d2fv7b1 B:194-199,199-208,230-237,239-246,251-255 2ax3 d2ax3a1 A:359-366,366-375,397-403,405-411,412-418 2fv7 d2fv7a1 A:194-199,199-208,230-237,239-246,251-255 1kyh d1kyha_ A:142-149,149-158,181-187,189-195,197-203 1jxi d1jxib_ B:134-139,154-169,171-176,187-192,193-198 1jxi d1jxia_ A:134-139,154-169,171-176,187-192,193-198 1jxh d1jxha_ A:134-139,154-169,171-176,187-192,193-198 1jxh d1jxhb_ B:134-139,154-169,171-176,187-192,193-198 1jxi d1jxib_ B:134-139,139-148,171-176,187-192,193-198 1jxi d1jxia_ A:134-139,139-148,171-176,187-192,193-198 1tz6 d1tz6a_ A:184-189,205-213,216-221,224-231,232-239 1jxh d1jxha_ A:134-139,139-148,171-176,187-192,193-198 1jxh d1jxhb_ B:134-139,139-148,171-176,187-192,193-198 1tz6 d1tz6a_ A:184-189,189-198,216-221,224-231,232-239 1lio d1lioa_ A:218-224,223-235,273-279,283-287,293-300 1lio d1lioa_ A:218-224,240-251,273-279,283-287,293-300 1tyy d1tyya_ A:184-189,205-213,216-221,224-231,232-239 1tyy d1tyya_ A:184-189,189-198,216-221,224-231,232-239 1tz3 d1tz3a_ A:184-189,205-213,216-221,224-231,232-239 1tz3 d1tz3a_ A:184-189,189-198,216-221,224-231,232-239 1rfv d1rfva_ A:145-150,164-179,181-188,197-208,214-225 1rfv d1rfva_ A:145-150,150-159,181-188,197-208,214-225 1lhp d1lhpa_ A:145-150,164-179,181-188,197-208,214-225 1lhp d1lhpa_ A:145-150,150-159,181-188,197-208,214-225 2afb d2afba1 A:189-194,217-233,235-245,248-259,260-272 1lhr d1lhra_ A:145-150,164-179,181-188,197-208,214-225 1lhr d1lhra_ A:145-150,150-159,181-188,197-208,214-225 2afb d2afba1 A:189-194,194-203,235-245,248-259,260-272 2afb d2afbb1 B:189-193,217-233,235-245,248-259,260-272 2afb d2afbb1 B:189-193,194-203,235-245,248-259,260-272 1ygk d1ygka1 A:145-150,164-179,181-188,197-209,213-225 1ygk d1ygka1 A:145-150,150-159,181-188,197-209,213-225 1ygj d1ygja1 A:145-150,164-179,181-187,197-210,212-225 1yhj d1yhja1 A:145-150,164-179,181-188,197-209,213-225 1rfu d1rfud_ D:145-150,164-179,181-188,197-210,212-225 1rfu d1rfuh_ H:145-150,164-179,181-188,197-210,212-225 1rfu d1rfuc_ C:145-150,164-179,181-188,197-210,212-225 1ygj d1ygja1 A:145-150,150-159,181-187,197-210,212-225 1rfu d1rfub_ B:145-150,164-179,181-188,197-210,212-225 1rfu d1rfua_ A:145-150,164-179,181-188,197-210,212-225 1rfu d1rfuf_ F:145-150,164-179,181-188,197-210,212-225 1rfu d1rfug_ G:145-150,164-179,181-188,197-210,212-225 1rfu d1rfue_ E:145-150,164-179,181-188,197-210,212-225 1rfv d1rfvb_ B:145-150,164-179,181-188,197-210,212-225 1yhj d1yhja1 A:145-150,150-159,181-188,197-209,213-225 1rft d1rfta_ A:145-149,164-179,181-188,197-210,212-225 1rfu d1rfud_ D:145-150,150-159,181-188,197-210,212-225 1rfu d1rfuh_ H:145-150,150-159,181-188,197-210,212-225 1rfu d1rfuc_ C:145-150,150-159,181-188,197-210,212-225 1lhp d1lhpb_ B:145-150,164-179,181-188,197-210,212-225 1rfu d1rfub_ B:145-150,150-159,181-188,197-210,212-225 1rfv d1rfvb_ B:145-150,150-159,181-188,197-210,212-225 1rfu d1rfuf_ F:145-150,150-159,181-188,197-210,212-225 1rfu d1rfua_ A:145-150,150-159,181-188,197-210,212-225 1rfu d1rfug_ G:145-150,150-159,181-188,197-210,212-225 1rfu d1rfue_ E:145-150,150-159,181-188,197-210,212-225 1lhr d1lhrb_ B:145-150,164-179,181-188,197-210,212-225 1lhp d1lhpb_ B:145-150,150-159,181-188,197-210,212-225 1rft d1rfta_ A:145-149,150-159,181-188,197-210,212-225 1lhr d1lhrb_ B:145-150,150-159,181-188,197-210,212-225 5. c.107.1 DHH phosphoesterases constituent families have similar domain organization with variable interdomain linker and spatial arrangement of the domains ! DHH phosphoesterases consists of two non-similar domains ! Domain 1 has parallel sheet of 6 strands, order 321456 ! Domain 2 has mixed sheet of 5 strands, order 12345; strands 1 & 4 are antiparallel to the rest 1ir6 d1ir6a_ A:331-337,340-356,358-364,365-371,396-402 1wpp d1wppb_ B:213-224,232-248,250-260,261-271,287-293 1wpp d1wppa_ A:213-224,232-248,250-260,261-271,287-293 1wpm d1wpmb_ B:211-222,230-246,248-258,259-269,285-291 1k23 d1k23a_ A:211-222,230-246,248-258,259-269,285-291 1k23 d1k23c_ C:211-222,230-246,248-258,259-269,285-291 1k23 d1k23b_ B:211-222,230-246,248-258,259-269,285-291 1k20 d1k20a_ A:213-223,232-248,250-260,261-271,287-293 1i74 d1i74a_ A:211-221,230-246,248-258,259-269,285-291 1k20 d1k20b_ B:213-223,232-248,250-260,261-271,287-293 1wpm d1wpma_ A:211-221,230-246,248-258,259-269,285-291 1i74 d1i74b_ B:211-221,230-246,248-258,259-269,285-291 2haw d2hawa1 A:211-221,230-246,248-258,259-269,285-291 2haw d2hawb1 B:211-221,230-246,248-258,259-269,285-291 7. c.27.1 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like 1khd d1khda2 A:200-206,208-223,225-232,243-251,252-260 1khd d1khdb2 B:200-206,208-223,225-232,243-251,252-260 1kgz d1kgzb2 B:200-206,208-223,225-232,243-251,252-260 1khd d1khdc2 C:200-206,208-223,225-232,243-251,253-260 1v8g d1v8ga2 A:186-192,194-209,210-218,227-233,235-241 2elc d2elcc2 C:186-192,194-209,210-218,227-233,235-241 1khd d1khdd2 D:200-206,208-223,225-233,242-251,252-260 2elc d2elcd2 D:186-192,194-209,210-218,227-233,235-241 1v8g d1v8gb2 B:186-192,194-209,210-218,227-233,235-241 1kgz d1kgza2 A:200-206,208-223,225-232,243-251,253-260 1zxy d1zxyd2 D:186-192,194-209,211-219,229-238,239-248 2gvq d2gvqd2 D:186-192,194-209,211-219,229-238,239-248 1o17 d1o17d2 D:186-192,194-209,211-219,229-238,239-248 2gvq d2gvqb2 B:186-192,194-209,211-219,229-238,239-248 1o17 d1o17b2 B:186-192,194-209,211-219,229-238,239-248 1zyk d1zyka2 A:186-192,194-209,211-219,229-238,239-248 1zyk d1zykb2 B:186-192,194-209,211-219,229-238,239-248 1gxb d1gxbd2 D:186-192,194-209,211-219,229-238,239-248 1gxb d1gxba2 A:186-192,194-209,211-219,229-238,239-248 2gvq d2gvqc2 C:186-192,194-209,211-219,229-238,239-248 1zyk d1zykd2 D:186-192,194-209,211-219,229-238,239-248 1gxb d1gxbc2 C:186-192,194-209,211-219,229-238,239-248 2gvq d2gvqa2 A:186-192,194-209,211-219,229-238,239-248 1gxb d1gxbb2 B:186-192,194-209,211-219,229-238,239-248 1zxy d1zxya2 A:186-192,194-209,211-219,229-238,239-248 1zxy d1zxyb2 B:186-192,194-209,211-219,229-238,239-248 2elc d2elcb2 B:186-192,194-209,210-218,227-233,236-241 1zyk d1zykc2 C:186-192,194-209,211-219,229-238,239-248 1o17 d1o17a2 A:186-192,194-209,211-219,229-238,239-248 1zxy d1zxyc2 C:186-192,194-209,211-219,229-238,239-248 1o17 d1o17c2 C:186-192,194-209,211-219,229-238,239-248 2elc d2elca2 A:186-192,194-209,210-217,227-233,235-241 10. c.51.3 B12-dependent dehydatase associated subunit Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 1nbw d1nbwb_ B:7-13,46-59,61-68,70-77,85-90 1nbw d1nbwd_ D:7-13,46-59,61-68,70-77,85-90 2d0o d2d0ob1 B:9-16,45-57,60-66,68-75,82-88 2d0o d2d0od1 D:9-16,45-58,60-66,68-75,82-88 2d0p d2d0pd1 D:9-16,45-58,60-66,68-75,82-88 2d0p d2d0pb1 B:9-16,45-58,60-66,68-75,82-88 1uc5 d1uc5e_ E:61-69,112-124,127-134,136-143,150-155 1uc5 d1uc5b_ B:61-69,112-124,127-134,136-143,150-155 1egm d1egme_ E:61-69,112-124,127-134,136-143,150-155 1dio d1dioe_ E:61-69,112-124,127-134,136-143,150-155 1uc4 d1uc4b_ B:61-69,112-124,127-134,136-143,150-155 1mmf d1mmfe_ E:28-36,79-92,94-101,103-110,117-122 1mmf d1mmfb_ B:28-36,79-92,94-101,103-110,117-122 1dio d1diob_ B:61-69,112-124,127-134,136-143,150-155 1iwp d1iwpb_ B:28-36,79-92,94-101,103-110,117-122 1iwb d1iwbb_ B:61-69,112-124,127-134,136-143,150-155 1iwb d1iwbe_ E:61-69,112-124,127-134,136-143,150-154 1egv d1egvb_ B:61-69,112-124,127-134,136-143,150-155 1uc4 d1uc4e_ E:61-69,112-125,127-134,136-143,150-155 1egm d1egmb_ B:61-69,112-124,127-134,136-143,150-155 1eex d1eexb_ B:61-69,112-124,127-134,136-143,150-155 1iwp d1iwpe_ E:28-36,79-92,94-101,103-110,117-122 1egv d1egve_ E:61-69,112-124,127-134,136-143,150-155 1eex d1eexe_ E:61-69,112-124,127-134,136-143,150-155 12. d.160.1 Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication 1f89 d1f89b_ B:486-494,503-516,516-524,536-543,545-553 1j31 d1j31c_ C:164-171,174-189,190-197,208-215,217-225 1j31 d1j31a_ A:164-171,174-189,190-197,208-215,217-225 1j31 d1j31d_ D:164-171,174-189,190-198,208-215,217-225 1j31 d1j31b_ B:164-171,174-189,190-198,208-215,217-225 1f89 d1f89a_ A:186-193,203-216,216-223,236-243,245-253 1fo6 d1fo6d_ D:190-197,211-228,229-236,248-254,256-263 1erz d1erza_ A:189-196,210-227,228-235,247-253,255-262 1uf8 d1uf8a_ A:189-196,210-227,228-235,247-253,255-262 1fo6 d1fo6b_ B:190-197,211-228,228-236,248-254,256-263 1uf5 d1uf5a_ A:189-196,210-227,228-235,247-253,255-262 1fo6 d1fo6a_ A:190-197,211-228,229-236,249-254,256-262 1fo6 d1fo6c_ C:190-197,211-228,229-236,248-254,256-263 1erz d1erzb_ B:189-196,210-227,228-235,247-253,255-262 2ggk d2ggkb1 B:190-197,211-228,229-236,249-254,256-262 1uf5 d1uf5b_ B:189-196,210-227,228-235,247-253,255-262 1uf7 d1uf7a_ A:189-196,210-227,228-235,247-253,255-262 1uf4 d1uf4a_ A:189-196,210-227,228-235,247-253,255-262 1uf4 d1uf4b_ B:189-196,210-227,228-235,247-253,255-262 1uf8 d1uf8b_ B:189-196,210-227,228-235,247-253,255-262 2ggk d2ggkd1 D:190-197,211-228,229-236,248-254,256-263 1ems d1emsb2 B:187-194,203-216,217-225,238-243,245-251 2ggk d2ggkc1 C:190-197,211-228,229-236,249-254,256-262 2ggl d2ggla1 A:190-197,211-228,229-236,249-254,256-262 1uf7 d1uf7b_ B:189-196,210-227,227-235,247-253,255-262 2ggl d2gglc1 C:190-197,211-228,229-236,249-254,256-262 2ggk d2ggka1 A:190-197,211-228,229-236,249-254,256-262 2ggl d2gglb1 B:190-197,211-228,229-236,249-254,256-262 1ems d1emsa2 A:187-194,203-216,217-225,238-243,245-251 1ems d1emsb2 B:48-55,75-89,90-100,108-117,119-127 2ggl d2ggld1 D:190-197,211-228,229-236,249-254,256-262 1ems d1emsa2 A:48-54,76-89,90-100,107-117,119-127 1ems d1emsa2 A:48-54,62-77,90-100,107-117,119-127 1j31 d1j31c_ C:36-41,66-80,81-92,93-104,105-113 1j31 d1j31b_ B:36-41,66-80,81-92,93-104,105-113 1j31 d1j31a_ A:36-41,66-80,81-92,93-104,105-113 1j31 d1j31d_ D:36-41,66-80,81-92,93-104,105-113 1f89 d1f89a_ A:47-54,77-91,92-105,106-118,120-128 1f89 d1f89b_ B:347-354,377-391,392-405,406-418,420-428 1uf5 d1uf5b_ B:40-45,74-88,88-102,103-116,119-126 2ggk d2ggka1 A:41-46,75-89,89-103,104-118,119-127 1uf4 d1uf4b_ B:40-44,74-88,88-102,103-116,119-126 1uf5 d1uf5a_ A:40-44,74-88,88-102,103-116,119-126 1erz d1erzb_ B:40-44,74-88,88-102,103-116,119-126 1uf7 d1uf7b_ B:40-44,74-88,88-102,103-116,119-126 2ggk d2ggkd1 D:41-46,75-89,89-103,104-117,120-127 1erz d1erza_ A:40-44,74-88,88-102,103-116,119-126 1uf8 d1uf8a_ A:40-45,74-88,88-102,103-116,119-126 1uf7 d1uf7a_ A:40-44,74-88,88-102,103-116,119-126 1uf8 d1uf8b_ B:40-44,74-88,88-102,103-116,119-126 1uf4 d1uf4a_ A:40-44,74-88,88-102,103-116,119-126 1fo6 d1fo6b_ B:41-46,75-89,89-103,104-117,120-127 1fo6 d1fo6d_ D:41-46,75-89,89-103,104-117,120-127 2ggl d2ggld1 D:41-45,75-89,89-103,104-117,120-127 2ggk d2ggkb1 B:41-46,75-89,89-103,104-117,120-127 2ggl d2gglc1 C:41-45,75-89,89-103,104-117,120-127 2ggk d2ggkc1 C:41-45,75-89,89-103,104-117,120-127 1fo6 d1fo6a_ A:41-46,75-89,90-103,104-117,120-127 2ggl d2ggla1 A:41-46,75-89,90-103,104-117,120-127 2ggl d2gglb1 B:41-45,75-89,90-103,104-117,120-127 1fo6 d1fo6c_ C:41-46,75-89,90-103,104-117,120-127 14. c.51.5 CinA-like Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 2a9s d2a9sb1 B:25-32,81-97,99-107,120-129,131-140 2a9s d2a9sa1 A:25-32,81-97,99-107,120-129,131-140 2a9s d2a9sb1 B:25-32,59-68,99-107,120-129,131-140 2a9s d2a9sa1 A:25-32,59-68,99-107,120-129,131-140 15. d.215.1 Smc hinge domain Smc hinge domain consists of 2 different alpha+beta subdomains; forms subdomain-swapped dimers 1gxl d1gxld_ D:616-621,622-634,636-642,644-649,651-658 1gxl d1gxla_ A:616-621,622-634,636-642,644-649,651-658 1gxl d1gxlb_ B:616-621,622-634,636-642,644-649,651-658 1gxl d1gxlc_ C:616-621,622-634,636-642,644-649,651-658 1gxk d1gxka_ A:617-621,622-634,636-642,644-649,651-658 1gxk d1gxkd_ D:617-621,622-634,636-642,644-649,651-656 1gxj d1gxja_ A:617-621,622-634,636-642,644-649,651-658 1gxk d1gxkc_ C:617-621,622-634,636-642,644-649,651-655 1gxk d1gxkb_ B:617-621,622-634,636-642,644-649,651-655 18. d.104.1 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases contains large mixed beta-sheet 1x01 d1x01a2 A:11-18,21-30,33-41,57-67,122-134 1x01 d1x01b2 B:11-18,21-30,33-41,57-67,122-134 2dkg d2dkga2 A:11-18,21-30,33-41,57-67,122-134 2dth d2dtha2 A:11-18,21-30,33-41,57-67,122-134 2e64 d2e64b2 B:11-18,21-30,33-41,57-67,122-134 1n9w d1n9wa2 A:267-271,271-284,310-316,332-342,343-352 1wpy d1wpyb2 B:11-18,21-30,33-41,57-67,122-134 1wqw d1wqwb2 B:11-18,21-30,33-41,57-67,122-134 2zgw d2zgwb2 B:11-18,21-30,33-41,57-67,122-134 2dto d2dtob2 B:11-18,21-30,33-41,57-67,122-134 2dkg d2dkgb2 B:11-18,21-30,33-41,57-67,122-134 1n9w d1n9wa2 A:267-271,292-308,310-316,332-342,343-352 2dti d2dtia2 A:11-18,21-30,33-41,57-67,122-134 2fyk d2fykb2 B:11-18,21-30,33-41,57-67,122-134 2dti d2dtib2 B:11-18,21-30,33-41,57-67,122-134 2ejf d2ejfa2 A:11-18,21-30,33-41,57-67,122-134 2e41 d2e41b2 B:11-18,21-30,33-41,57-67,122-134 1wnl d1wnlb2 B:11-18,21-30,33-41,57-67,122-134 1wq7 d1wq7a2 A:11-18,21-30,33-41,57-67,122-134 1wq7 d1wq7b2 B:11-18,21-30,34-41,57-67,122-134 2dth d2dthb2 B:11-18,21-30,33-41,57-67,122-134 1eqr d1eqrb3 B:267-271,271-280,426-432,469-479,480-489 2e64 d2e64a2 A:11-18,21-29,33-41,57-67,122-134 1wqw d1wqwa2 A:11-18,21-29,33-41,57-67,122-134 1eqr d1eqra3 A:267-271,271-280,426-432,469-479,480-489 2fyk d2fyka2 A:11-18,21-29,33-41,57-67,122-134 1wpy d1wpya2 A:11-18,21-29,33-41,57-67,122-134 1eqr d1eqrc3 C:267-271,271-280,426-432,469-479,480-489 2zgw d2zgwa2 A:11-18,21-29,33-41,57-67,122-134 2dto d2dtoa2 A:11-18,21-29,33-41,57-67,122-134 1wnl d1wnla2 A:11-18,21-29,33-41,57-67,122-134 2ejf d2ejfb2 B:11-18,21-29,35-41,57-67,122-134 1il2 d1il2b3 B:1267-1271,1271-1280,1426-1432,1469-1479,1480-1489 1e1t d1e1ta2 A:323-327,366-380,383-391,411-418,419-428 2e41 d2e41a2 A:11-18,21-29,33-41,57-67,122-134 1e1o d1e1oa2 A:323-327,366-380,383-391,411-418,419-428 1e22 d1e22a2 A:323-327,366-380,383-391,411-418,419-428 1il2 d1il2a3 A:267-271,271-280,426-432,469-479,480-489 1g51 d1g51a3 A:274-278,278-287,419-425,466-473,474-483 11as d11asa_ A:165-169,181-194,194-200,232-241,244-255 1efw d1efwb3 B:274-278,278-287,419-425,463-473,474-483 1e1t d1e1ta2 A:323-327,327-337,383-391,411-418,419-428 1c0a d1c0aa3 A:267-271,271-280,426-432,469-479,480-489 1g51 d1g51b3 B:1274-1278,1278-1287,1419-1425,1466-1473,1474-1483 1e1o d1e1oa2 A:323-327,327-337,383-391,411-418,419-428 12as d12asb_ B:165-169,181-194,194-200,232-241,244-255 1e22 d1e22a2 A:323-327,327-337,383-391,411-418,419-428 1l0w d1l0wb3 B:1274-1278,1278-1287,1419-1425,1466-1473,1474-1483 1l0w d1l0wa3 A:274-278,278-287,419-425,466-473,474-483 11as d11asa_ A:165-169,169-178,194-200,232-241,244-255 12as d12asa_ A:165-169,181-194,194-200,232-241,244-255 1efw d1efwa3 A:274-278,278-287,419-425,466-473,474-483 12as d12asb_ B:165-169,169-178,194-200,232-241,244-255 1j5w d1j5wb_ B:19-24,35-44,47-58,72-83,153-160 1nnh d1nnha_ A:158-162,172-180,181-188,203-211,212-222 1nnh d1nnha_ A:158-162,162-171,181-188,203-211,212-222 1w66 d1w66a1 A:12-21,21-39,42-50,85-97,153-165 1qe0 d1qe0a2 A:35-40,80-93,101-112,122-133,302-309 1x2g d1x2gc2 C:2-9,12-27,31-38,82-92,144-154 12as d12asa_ A:165-169,169-178,194-200,232-241,244-255 1qe0 d1qe0b2 B:35-40,80-93,101-112,122-133,302-309 1x2g d1x2ga2 A:2-9,12-28,31-38,82-92,144-154 1kmm d1kmmb2 B:38-44,83-96,102-113,123-134,301-308 1vqz d1vqza2 A:0-4,10-26,29-36,80-90,141-151 1x2h d1x2hc2 C:2-9,12-28,31-38,82-92,144-154 1x2h d1x2hb2 B:2-9,12-28,31-38,82-92,144-155 1x2h d1x2ha2 A:2-9,12-28,31-38,82-92,144-154 1ses d1sesb2 B:185-190,225-235,245-256,273-285,374-384 1set d1setb2 B:185-190,225-235,245-256,273-285,374-384 1x2g d1x2gb2 B:2-9,12-28,31-38,82-92,144-155 1set d1seta2 A:185-190,225-235,245-256,273-285,374-384 1kmn d1kmna2 A:38-44,83-96,102-113,123-134,301-308 1ggm d1ggmb2 B:59-63,188-197,209-220,233-245,355-363 1bia d1biaa3 A:80-86,89-98,103-111,129-140,198-209 1ggm d1ggma2 A:59-63,188-197,209-220,233-245,355-363 2p0l d2p0la1 A:12-21,25-44,46-55,99-109,172-182 1ggm d1ggmb2 B:59-63,196-205,209-220,233-245,355-363 1ser d1serb2 B:685-690,725-735,745-756,773-785,874-884 1ati d1atia2 A:59-63,188-197,209-220,233-245,355-363 1ggm d1ggma2 A:59-63,196-205,209-220,233-245,355-363 1sry d1srya2 A:185-190,225-235,245-256,273-285,374-384 1ati d1atib2 B:59-63,188-197,209-220,233-245,355-363 2amc d2amcb6 B:506-510,547-564,567-578,580-591,668-675 1b76 d1b76a2 A:59-63,188-197,209-220,233-245,355-363 1b70 d1b70b5 B:506-510,547-564,568-578,580-590,668-675 12as d12asb_ B:28-32,73-85,90-100,112-123,289-296 2iy5 d2iy5b6 B:506-510,547-564,567-578,580-591,668-675 1ati d1atia2 A:59-63,196-205,209-220,233-245,355-363 1sry d1sryb2 B:185-190,225-235,245-256,273-285,374-384 1ser d1sera2 A:185-190,225-235,245-256,273-285,374-384 2aly d2alyb6 B:506-510,547-564,567-578,580-591,668-675 1ati d1atib2 B:59-63,196-205,209-220,233-245,355-363 2akw d2akwb6 B:506-510,547-564,567-578,580-591,668-675 1b76 d1b76a2 A:59-63,196-205,209-220,233-245,355-363 1b7y d1b7yb5 B:506-510,547-564,567-578,580-591,668-675 1bbw d1bbwa2 A:323-327,366-380,387-394,408-418,419-428 1bib d1biba3 A:80-86,89-98,103-111,129-140,198-210 2ewn d2ewnb3 B:80-86,89-98,103-111,129-141,197-210 1eiy d1eiyb5 B:506-510,547-564,567-578,580-591,668-675 1jjc d1jjcb5 B:506-510,547-564,566-578,580-591,668-675 12as d12asa_ A:28-32,73-85,88-100,112-123,289-296 1bbw d1bbwa2 A:323-327,327-337,387-394,408-418,419-428 11as d11asb_ B:165-169,181-194,194-200,232-242,243-255 2p5i d2p5ia1 A:14-20,28-46,50-56,102-112,173-183 1lyl d1lylc2 C:323-327,366-380,387-394,408-418,419-428 2ewn d2ewna3 A:80-86,89-98,103-111,129-140,196-210 1bbu d1bbua2 A:323-327,366-380,387-394,408-418,419-428 11as d11asb_ B:165-169,169-178,194-200,232-242,243-255 1lyl d1lyla2 A:323-327,366-380,387-394,408-418,419-428 1hxd d1hxdb3 B:80-86,89-98,103-111,129-142,197-210 1hxd d1hxda3 A:80-86,89-98,103-111,129-142,197-210 1bbu d1bbua2 A:323-327,327-337,387-394,408-418,419-428 1lyl d1lylc2 C:323-327,327-337,387-394,408-418,419-428 1lyl d1lylb2 B:323-327,366-380,387-394,408-418,419-428 1pys d1pysb5 B:506-510,547-564,566-578,580-592,668-675 1lyl d1lyla2 A:323-327,327-337,387-394,408-418,419-428 1lyl d1lylb2 B:323-327,327-337,387-394,408-418,419-428 2c8m d2c8md1 D:1-6,13-28,33-40,84-94,156-166 2c7i d2c7ib1 B:1-8,13-28,34-40,84-94,156-166 2c7i d2c7ia1 A:1-8,13-28,34-40,84-94,156-166 1g5h d1g5hb2 B:98-102,158-167,179-192,204-218,307-315 1g5i d1g5id2 D:98-102,158-167,179-192,204-218,307-315 1g5h d1g5hb2 B:98-102,166-175,179-192,204-218,307-315 1e24 d1e24a2 A:323-327,366-380,387-394,411-418,419-428 1g5i d1g5id2 D:98-102,166-175,179-192,204-218,307-315 1g5i d1g5ib2 B:98-102,158-167,179-192,204-218,307-315 2g4c d2g4cb2 B:124-128,184-193,205-218,230-244,333-341 2ars d2arsa1 A:1-8,13-28,34-40,84-94,156-166 2c7i d2c7id1 D:1-8,13-29,33-40,84-94,156-167 2c8m d2c8ma1 A:1-8,13-28,34-40,84-94,156-166 1g5h d1g5hd2 D:98-102,158-167,179-192,204-218,307-315 1g5i d1g5ib2 B:98-102,166-175,179-192,204-218,307-315 2g4c d2g4cb2 B:124-128,192-201,205-218,230-244,333-341 1g5h d1g5hd2 D:98-102,166-175,179-192,204-218,307-315 1e24 d1e24a2 A:323-327,327-337,387-394,411-418,419-428 2g4c d2g4cc2 C:124-128,184-193,205-218,230-244,333-341 2g4c d2g4cd2 D:124-128,184-193,205-218,230-244,333-341 2g4c d2g4cc2 C:124-128,192-201,205-218,230-244,333-341 2g4c d2g4cd2 D:124-128,192-201,205-218,230-244,333-341 2art d2arta1 A:1-8,13-29,34-40,84-94,156-166 2aru d2arua1 A:1-8,13-29,34-40,84-94,156-166 2c8m d2c8mc1 C:1-7,13-28,34-40,84-94,156-166 2c7i d2c7ic1 C:1-7,13-29,34-40,84-94,156-166 1b76 d1b76b2 B:59-63,188-197,209-222,233-245,355-363 1ses d1sesa2 A:185-190,225-235,245-256,273-286,369-384 1b76 d1b76b2 B:59-63,196-205,209-222,233-245,355-363 2c8m d2c8mb1 B:1-7,13-29,34-40,84-94,156-167 1g5h d1g5ha2 A:98-102,158-167,179-193,203-218,307-315 1g5i d1g5ia2 A:98-102,158-167,179-193,203-218,307-315 1g5h d1g5ha2 A:98-102,166-175,179-193,203-218,307-315 1g5i d1g5ia2 A:98-102,166-175,179-193,203-218,307-315 1g5i d1g5ic2 C:98-102,158-167,179-193,203-218,307-315 1g5i d1g5ic2 C:98-102,166-175,179-193,203-218,307-315 1g5h d1g5hc2 C:98-102,158-167,179-193,203-218,307-315 1g5h d1g5hc2 C:98-102,166-175,179-193,203-218,307-315 1usy d1usyd_ D:21-25,53-66,71-84,85-99,260-270 1usy d1usyb_ B:21-25,53-66,70-84,85-99,260-270 1usy d1usya_ A:21-25,53-66,71-84,85-99,260-271 20. c.111.1 Activating enzymes of the ubiquitin-like proteins transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins ! the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds ! Activating enzymes of the ubiquitin-like proteins 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest 2nvu d2nvub1 B:2139-2144,2147-2162,2175-2184,2185-2193,2320-2326 1tt5 d1tt5d_ D:139-144,147-163,175-184,185-194,320-326 1r4n d1r4nh_ H:139-144,147-163,175-184,185-193,320-326 3dbl d3dblh1 H:139-144,147-163,175-184,185-193,320-326 3dbh d3dbhg1 G:124-130,132-147,149-157,158-166,518-524 1yov d1yovb1 B:139-144,147-163,175-184,185-194,320-326 3dbl d3dblb1 B:139-144,147-163,175-184,185-194,320-326 3dbl d3dblg1 G:124-130,132-147,149-157,158-166,518-525 1yov d1yovd1 D:139-144,147-162,176-184,185-193,320-326 1r4n d1r4nc_ C:124-130,132-147,149-157,158-166,518-525 1r4n d1r4ng_ G:124-130,132-147,149-157,158-166,518-525 1r4n d1r4ne_ E:124-130,132-147,149-157,158-166,518-525 1tt5 d1tt5a_ A:124-130,132-147,149-157,158-166,518-525 1r4n d1r4na_ A:124-130,132-147,149-157,158-166,518-525 3dbh d3dbhe1 E:124-130,132-147,149-157,158-166,518-525 3dbl d3dble1 E:124-130,132-147,149-157,158-166,518-525 3dbl d3dbla1 A:124-130,132-147,149-157,158-166,518-525 1r4m d1r4me_ E:124-130,132-147,149-157,158-166,518-525 1yov d1yovc1 C:124-130,132-147,149-157,158-166,518-525 1r4m d1r4mg_ G:124-130,132-147,149-157,158-166,518-525 1yov d1yova1 A:124-130,132-147,149-157,158-166,518-525 1r4m d1r4ma_ A:124-130,132-147,149-157,158-166,518-525 1r4m d1r4mc_ C:124-130,132-147,149-157,158-166,518-525 3dbl d3dblf1 F:139-144,147-162,176-184,185-193,320-326 3dbh d3dbha1 A:124-130,132-147,149-157,158-166,518-525 3dbh d3dbhc1 C:124-130,132-147,149-157,158-166,518-525 1tt5 d1tt5c_ C:124-130,132-147,149-157,158-166,518-525 3dbr d3dbrg1 G:124-130,132-147,149-157,158-166,518-525 2nvu d2nvua1 A:124-130,132-147,149-157,158-166,518-525 3dbr d3dbra1 A:124-130,132-147,149-157,158-166,518-525 3dbl d3dbld1 D:139-144,147-162,175-184,185-193,320-327 3dbr d3dbrc1 C:124-130,132-147,149-157,158-166,518-525 1r4m d1r4mb_ B:139-144,147-163,176-184,185-193,320-326 1r4m d1r4md_ D:139-144,147-163,176-184,185-193,320-326 1r4m d1r4mh_ H:139-144,147-163,176-184,185-193,320-326 1r4m d1r4mf_ F:139-144,147-163,176-184,185-193,320-326 3dbl d3dblc1 C:124-130,132-147,149-157,158-166,518-525 3dbr d3dbre1 E:124-130,132-147,149-157,158-166,518-525 1r4n d1r4nb_ B:139-144,147-163,175-184,185-193,320-327 1r4n d1r4nd_ D:139-144,147-163,175-184,185-193,320-327 1r4n d1r4nf_ F:139-144,147-163,175-184,185-193,320-327 1jwb d1jwbb_ B:123-128,131-146,148-156,157-165,221-229 1tt5 d1tt5b_ B:139-144,147-163,175-184,185-194,320-327 1jwa d1jwab_ B:123-128,131-146,148-156,157-165,221-229 1jw9 d1jw9b_ B:123-128,131-146,148-156,157-165,221-229 25. d.165.1 Ribosome inactivating proteins (RIP) Ribosome inactivating proteins (RIP) contains mixed beta-sheet 1dm0 d1dm0l_ L:1-7,9-26,47-56,66-74,75-85 1r4q d1r4ql_ L:1-7,9-25,47-56,66-74,75-85 1abr d1abra_ A:4-9,13-29,50-58,62-71,72-81 2q3n d2q3na1 A:4-8,12-29,49-57,61-69,72-80 1r4p d1r4pa_ A:1-7,9-25,48-56,66-74,75-85 2ga4 d2ga4a1 A:1-7,9-25,48-56,66-74,75-85 1dm0 d1dm0a_ A:1-7,9-26,47-56,66-74,75-85 1r4q d1r4qa_ A:1-7,9-25,47-56,66-74,75-85 1qcj d1qcja_ A:2-9,12-28,48-57,59-69,70-80 1lpc d1lpca_ A:2-9,12-28,50-59,60-70,71-82 1qi7 d1qi7a_ A:2-8,12-28,49-58,59-69,70-81 1lpd d1lpda_ A:2-9,12-28,50-59,60-70,71-82 1lp8 d1lp8a_ A:2-9,12-28,50-59,60-70,71-82 1rl0 d1rl0a_ A:2-9,12-28,50-59,60-70,71-82 1qcj d1qcjb_ B:2-9,12-29,48-57,59-69,70-80 1d6a d1d6ab_ B:2-9,12-28,48-57,59-69,70-81 1il3 d1il3a_ A:7-14,17-34,56-65,67-77,78-87 1il5 d1il5b_ B:7-14,17-34,56-65,67-77,78-87 1br5 d1br5a_ A:7-14,17-33,56-65,67-77,78-87 1d6a d1d6aa_ A:2-9,12-28,48-57,59-69,70-81 1il4 d1il4a_ A:7-14,17-34,56-65,67-77,78-87 1d8v d1d8va_ A:1-6,10-26,46-55,57-67,68-77 1uq5 d1uq5a_ A:7-14,17-34,56-65,67-77,78-87 1pc8 d1pc8a_ A:4-10,13-29,51-60,63-72,73-82 1br6 d1br6a_ A:7-14,17-34,56-65,67-77,78-87 1rzo d1rzoc_ C:1007-1014,1017-1034,1056-1065,1067-1077,1078-1087 2p8n d2p8na1 A:7-14,17-34,56-65,67-77,78-87 2r9k d2r9ka1 A:1-9,13-29,52-61,63-73,74-83 1il9 d1il9a_ A:7-14,17-34,56-65,67-77,78-87 2aai d2aaia_ A:7-14,17-34,56-65,67-77,78-87 2r3d d2r3da1 A:6-14,17-34,56-65,67-77,78-87 2pjo d2pjoa1 A:7-14,17-34,56-65,67-77,78-87 1qci d1qcib_ B:1-9,12-28,48-57,59-69,70-81 1m2t d1m2ta_ A:2-9,13-30,52-61,63-73,74-83 1j1m d1j1ma_ A:6-14,17-34,56-65,67-77,78-87 1ifu d1ifua_ A:6-14,17-34,56-65,67-77,78-87 1qci d1qcia_ A:1-9,12-28,48-57,59-69,70-81 2r2x d2r2xa1 A:7-14,17-34,56-65,67-77,78-87 1oql d1oqla_ A:1-9,13-30,52-61,63-73,74-83 1uq4 d1uq4a_ A:7-14,17-34,56-65,67-77,78-87 1sz6 d1sz6a_ A:2-9,13-30,52-61,63-73,74-83 1obs d1obsa_ A:7-14,17-34,56-65,67-77,78-87 1ifs d1ifsa_ A:6-14,17-34,56-65,67-77,78-87 1obt d1obta_ A:7-14,17-34,56-65,67-77,78-87 1j4g d1j4gb_ B:0-7,10-26,46-55,58-67,68-77 1tfm d1tfma_ A:3-10,13-30,51-60,62-72,73-82 1yf8 d1yf8a1 A:3-10,13-30,51-60,62-72,73-82 1onk d1onka_ A:1-9,13-30,52-61,63-73,74-83 1paf d1pafb_ B:1-9,12-28,48-57,59-69,70-81 1pum d1puma_ A:2-9,13-30,52-61,63-73,74-83 1puu d1puua_ A:1-9,13-30,52-61,63-73,74-83 1paf d1pafa_ A:1-9,12-28,48-57,59-69,70-81 1j1q d1j1qa_ A:3-9,12-28,48-57,59-69,70-81 1gis d1gisa_ A:1-8,11-27,47-56,59-68,69-78 1nli d1nlia_ A:0-7,10-26,46-55,58-67,68-77 1pag d1pagb_ B:1-9,12-28,48-57,59-69,70-81 1giu d1giua_ A:1-7,10-26,46-55,58-67,68-77 1bry d1bryy_ Y:1-7,10-26,46-55,58-67,68-77 1pag d1paga_ A:1-9,12-28,48-57,59-69,70-81 1ift d1ifta_ A:6-14,17-34,56-65,67-77,78-87 2mll d2mlla_ A:3-10,13-30,51-60,62-72,73-82 1ce7 d1ce7a_ A:3-10,13-30,51-60,62-72,73-82 1j4g d1j4gd_ D:0-7,10-26,46-55,58-67,68-77 1bry d1bryz_ Z:1-7,10-26,46-55,58-67,68-77 1il5 d1il5a_ A:7-14,17-34,56-65,67-77,78-87 1mrj d1mrja_ A:1-7,10-26,46-55,58-67,68-77 1qcg d1qcga_ A:1-9,12-29,48-57,59-69,70-81 1gik d1gika_ A:3-8,12-28,48-57,59-69,70-81 3ctk d3ctka1 A:1-9,10-27,46-55,57-67,68-79 1qcg d1qcgb_ B:1-9,12-29,48-57,59-69,70-81 1hwn d1hwna_ A:4-11,14-31,53-62,65-74,75-84 1rzo d1rzoa_ A:1007-1014,1017-1036,1056-1065,1067-1077,1078-1087 1j1r d1j1ra_ A:3-9,12-28,48-57,59-69,70-81 1mrk d1mrka_ A:1-7,10-26,46-55,58-67,68-77 1hwp d1hwpa_ A:4-11,14-31,53-62,65-74,75-84 1mri d1mria_ A:1-7,10-26,46-55,58-67,68-77 1hwo d1hwoa_ A:4-11,14-31,53-62,65-74,75-84 1j1s d1j1sa_ A:3-9,12-28,48-57,59-69,70-81 1tcs d1tcsa_ A:1-7,10-26,46-55,58-67,68-77 1rtc d1rtca_ A:7-14,17-34,56-65,67-77,78-87 1j4g d1j4ga_ A:2-7,10-26,46-55,58-67,68-77 1cf5 d1cf5a_ A:1-7,10-26,46-55,58-67,68-77 1aha d1ahaa_ A:1-7,10-26,46-55,58-67,68-77 1mrh d1mrha_ A:1-7,10-26,46-55,58-67,68-77 2jdl d2jdla1 A:2-7,10-26,46-55,58-67,68-77 1nio d1nioa_ A:2-8,11-27,47-56,59-68,69-78 1mrg d1mrga_ A:1-7,10-26,46-55,58-67,68-77 1cf5 d1cf5b_ B:1-7,10-26,46-55,58-67,68-77 1qd2 d1qd2a_ A:1-7,10-26,46-55,58-67,68-77 2jdl d2jdlb1 B:2-7,10-26,46-55,58-67,68-77 1mom d1moma_ A:1-7,10-26,46-55,58-67,68-77 1j4g d1j4gc_ C:2-7,10-26,46-55,58-67,68-77 1ahb d1ahba_ A:1-7,10-26,46-55,58-67,68-77 1ahc d1ahca_ A:1-7,10-26,46-55,58-67,68-77 1hwm d1hwma_ A:4-11,14-31,53-62,65-74,75-84 1apa d1apaa_ A:8-14,17-34,53-62,64-74,75-86 1lln d1llna_ A:1-5,10-26,46-55,57-66,67-78 1f8q d1f8qa_ A:1-7,10-26,46-55,58-67,68-77 30. c.100.1 Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, catalytic domain 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 432156 1ig3 d1ig3b2 B:140-146,151-165,172-178,179-187,253-261 1ig3 d1ig3a2 A:140-146,151-170,172-178,179-187,253-261 2f17 d2f17a2 A:120-126,131-150,152-158,159-169,233-241 1ig0 d1ig0b2 B:183-190,195-214,215-223,224-233,302-311 1ig0 d1ig0a2 A:183-190,195-214,215-223,224-233,302-311 40. d.21.1 Diaminopimelate epimerase-like duplication: consists of two similar domain swapped with C-terminal strands ! Diaminopimelate epimerase-like mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix 1s7j d1s7jb_ B:144-150,162-169,173-181,185-193,196-200 1s7j d1s7ja_ A:144-150,162-169,173-181,185-193,196-200 1u0k d1u0ka1 A:18-26,31-43,46-52,57-66,67-71 1qy9 d1qy9b2 B:161-169,180-192,195-202,206-215,218-222 1qya d1qyaa2 A:161-169,180-192,195-202,206-215,218-222 1qy9 d1qy9c2 C:161-169,180-192,195-202,206-215,218-222 1qy9 d1qy9d2 D:161-169,180-192,195-202,206-215,218-222 1t6k d1t6ka2 A:153-160,172-180,182-191,192-201,204-208 1u1w d1u1wa2 A:153-160,172-180,182-191,192-201,204-208 1u1w d1u1wb2 B:153-160,172-180,182-191,192-201,204-208 1u1x d1u1xa2 A:153-160,172-180,182-191,192-201,204-208 1tm0 d1tm0a_ A:235-243,254-270,276-282,286-299,300-311 1xua d1xuaa2 A:153-160,172-180,182-191,192-201,204-208 1u1x d1u1xb2 B:153-160,172-180,182-191,192-201,204-208 1xua d1xuab2 B:153-160,172-180,182-191,192-201,204-208 1xub d1xuba2 A:153-160,172-180,182-191,192-202,203-208 1u1v d1u1va2 A:153-160,172-180,182-191,192-202,203-208 1tm0 d1tm0b_ B:235-243,255-270,275-282,286-299,300-311 2gke d2gkea2 A:200-209,217-232,236-243,244-251,256-263 1gqz d1gqza2 A:200-209,217-232,236-243,244-251,256-263 2q9j d2q9ja2 A:200-209,217-232,236-243,244-251,256-263 2q9h d2q9ha2 A:200-209,217-232,236-243,244-251,256-263 2gkj d2gkja2 A:200-209,217-232,236-243,244-251,256-263 1bwz d1bwza2 A:200-209,217-232,236-243,244-251,256-263 2q9j d2q9ja1 A:57-65,76-88,93-100,101-110,112-120 2q9h d2q9ha1 A:57-65,76-88,93-100,101-110,112-120 1s7j d1s7jb_ B:55-64,71-87,91-98,99-108,109-117 1s7j d1s7ja_ A:55-64,71-87,91-98,99-108,109-117 1gqz d1gqza1 A:57-65,76-88,93-100,101-110,112-120 1bwz d1bwza1 A:57-65,76-88,93-100,101-110,112-120 1u1w d1u1wb2 B:192-201,211-226,233-239,244-256,257-274 1u1x d1u1xb2 B:192-201,211-226,233-239,244-256,257-274 1s7j d1s7jb_ B:185-193,203-219,221-229,231-241,242-249 1s7j d1s7ja_ A:185-193,203-219,221-229,231-241,242-249 1t6k d1t6ka2 A:192-201,211-226,233-239,244-256,257-277 2gke d2gkea1 A:57-65,73-88,93-100,101-110,112-120 2gkj d2gkja1 A:57-65,73-88,93-100,101-110,112-120 1xua d1xuab2 B:192-201,211-226,233-239,243-256,257-274 1u1w d1u1wa2 A:192-201,211-226,233-239,244-256,257-277 1u1x d1u1xa2 A:192-201,211-226,233-239,244-256,257-277 1xub d1xuba2 A:192-202,211-226,233-239,244-254,257-277 1u1v d1u1va2 A:192-202,211-226,233-239,244-256,257-277 1xua d1xuaa2 A:192-201,211-226,233-239,244-256,257-277 1u1x d1u1xa1 A:57-65,72-84,90-97,98-109,110-119 1u1w d1u1wa1 A:57-65,72-84,90-97,98-109,110-119 1xua d1xuaa1 A:57-65,72-84,90-97,98-109,110-119 1xub d1xuba1 A:57-65,72-84,90-97,98-109,110-119 1u1v d1u1va1 A:57-65,72-87,90-97,98-109,110-119 1t6k d1t6ka1 A:57-65,72-84,90-97,98-109,110-119 1u1x d1u1xb1 B:57-65,72-84,90-96,99-109,110-119 1u1w d1u1wb1 B:57-65,72-84,90-97,98-109,110-119 1xua d1xuab1 B:57-65,72-84,90-97,98-109,110-119 1u0k d1u0kb2 B:202-207,219-234,241-247,251-262,264-281 1u0k d1u0ka2 A:202-207,219-234,241-247,252-262,264-281 1sdj d1sdja2 A:206-214,225-240,247-256,260-273,274-284 1u0k d1u0kb1 B:57-66,74-89,93-101,102-113,114-124 2h9f d2h9fa2 A:301-309,317-331,345-352,353-366,367-379 1qy9 d1qy9c1 C:57-65,72-88,90-99,100-111,112-120 1u0k d1u0ka1 A:57-66,74-89,93-101,102-113,114-124 1qy9 d1qy9d1 D:57-65,72-88,90-99,100-111,112-120 1qya d1qyaa1 A:57-65,74-88,90-98,102-111,112-120 1qy9 d1qy9b1 B:57-65,72-88,90-99,100-111,112-120 1qy9 d1qy9a1 A:57-65,72-88,90-99,100-111,112-120 1qya d1qyab1 B:57-65,72-88,90-99,100-111,112-120 1sdj d1sdja1 A:57-65,72-88,90-99,100-111,112-122 2h9f d2h9fa1 A:83-92,104-119,128-140,141-153,173-180 1qya d1qyab2 B:206-215,225-240,247-256,260-273,274-284 1qya d1qyaa2 A:206-215,225-240,247-256,260-273,274-284 1qy9 d1qy9b2 B:206-215,225-240,247-256,260-273,274-284 1qy9 d1qy9c2 C:206-215,225-240,247-256,260-273,274-284 1qy9 d1qy9a2 A:206-215,225-240,247-256,260-273,274-284 1qy9 d1qy9d2 D:206-215,225-240,247-256,260-273,274-284 1tm0 d1tm0a_ A:75-83,90-105,112-121,122-133,134-156 1tm0 d1tm0b_ B:75-83,90-105,112-121,122-133,134-156 48. b.170.1 WSSV envelope protein-like WSSV envelope protein-like beta-sandwich; 9 strands in 2 sheets; greek-key 2edm d2edma1 A:73-81,83-91,93-99,112-123,166-176 2ed6 d2ed6j1 J:78-84,87-95,97-103,116-127,166-179 2ed6 d2ed6l1 L:78-84,87-95,97-103,116-128,165-179 2ed6 d2ed6i1 I:78-84,87-95,97-103,116-128,165-179 2ed6 d2ed6e1 E:78-84,87-95,97-103,116-128,165-179 2ed6 d2ed6a1 A:78-84,87-95,97-103,116-128,165-179 2ed6 d2ed6f1 F:78-84,87-95,97-103,116-128,165-179 2ed6 d2ed6h1 H:78-83,87-95,97-103,116-128,165-179 2ed6 d2ed6c1 C:78-83,87-95,97-103,116-128,165-179 2ed6 d2ed6b1 B:78-83,87-95,97-103,116-128,165-179 2ed6 d2ed6d1 D:78-83,87-95,97-103,116-128,165-179 2ed6 d2ed6g1 G:78-83,87-95,97-103,116-128,165-179 2ed6 d2ed6k1 K:78-83,87-94,97-103,116-128,165-179 50. b.178.1 PA1994-like Spiral beta-roll a large 15-stranded beta-sheet rolled about a single helix core; overlapping edges form a sandwich-like structure; topological similarity to the LolA-like fold (scop_cf 89391) 2h1t d2h1ta1 A:101-105,107-119,123-134,139-151,153-160 2h1t d2h1tb1 B:101-105,107-119,122-134,139-151,153-160 53. c.51.2 TolB, N-terminal domain Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 2ivz d2ivzd2 D:35-45,88-96,98-109,111-122,126-138 2hqs d2hqsa2 A:35-46,88-96,98-109,111-122,126-138 1c5k d1c5ka2 A:35-46,88-96,98-109,111-123,126-138 2ivz d2ivzc2 C:35-45,88-96,98-109,111-122,126-138 2ivz d2ivza2 A:35-45,88-96,98-109,111-122,126-138 2hqs d2hqsb2 B:35-46,88-96,98-109,111-122,126-138 2ivz d2ivzb2 B:35-45,88-96,98-109,111-122,126-138 1crz d1crza2 A:13-25,66-74,76-87,89-100,104-116 2hqs d2hqsf2 F:33-46,88-96,98-109,111-122,126-138 2hqs d2hqsd2 D:33-46,88-96,98-109,111-122,126-138 54. c.51.4 ITPase-like formerly Maf/Ham1; elaborated with additional structures inserted in the common fold ! Anticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest 1zwy d1zwyc1 C:11-17,56-76,79-90,91-102,103-115 1zwy d1zwyb1 B:11-17,56-76,79-90,91-102,103-115 1zwy d1zwya1 A:11-17,56-76,79-90,91-102,103-115 1zno d1znob1 B:11-17,56-76,79-90,91-102,103-115 1u14 d1u14a_ A:1-8,47-67,70-81,82-93,94-106 1u5w d1u5wc1 C:4-10,50-70,73-84,85-96,97-109 1u5w d1u5wg1 G:4-11,50-70,73-84,85-96,97-109 1zwy d1zwyd1 D:10-17,56-76,79-90,91-102,103-115 1ex2 d1ex2b_ B:4-8,41-62,64-76,97-112,113-128 1u5w d1u5we1 E:4-11,50-70,73-84,85-96,97-109 1u5w d1u5wh1 H:4-11,50-70,73-84,85-96,97-109 1ex2 d1ex2a_ A:4-8,41-62,64-76,97-112,113-128 1u5w d1u5wa1 A:4-11,50-70,73-84,85-96,97-109 1exc d1excb_ B:4-8,41-62,64-76,98-112,113-128 1u5w d1u5wd1 D:4-11,50-70,73-84,85-96,97-109 1u5w d1u5wf1 F:4-11,50-70,73-84,85-96,97-109 1vp2 d1vp2a_ A:4-9,44-61,62-74,109-123,124-139 1exc d1exca_ A:4-8,41-62,64-76,98-112,113-128 1u5w d1u5wb1 B:4-11,50-70,73-84,85-96,97-109 1vp2 d1vp2b_ B:4-9,44-61,62-74,109-123,124-139 2mjp d2mjpb_ B:10-15,49-66,68-79,111-124,125-139 1zno d1znoa1 A:10-17,56-76,79-90,91-102,103-115 2j4e d2j4ec1 C:7-15,48-65,66-78,110-123,129-141 2j4e d2j4ee1 E:6-14,48-65,66-78,110-123,129-141 2i5d d2i5da1 A:6-14,48-65,66-78,110-123,129-141 2car d2cara1 A:6-14,48-65,66-78,110-123,129-141 2car d2carb1 B:6-14,48-65,66-78,110-123,129-141 2mjp d2mjpa_ A:10-15,49-66,68-79,111-124,125-139 2j4e d2j4ef1 F:7-14,48-65,66-78,110-123,129-141 2j4e d2j4eb1 B:7-15,48-65,66-78,110-123,129-141 1k7k d1k7ka_ A:1-7,45-62,63-75,114-127,133-145 1b78 d1b78a_ A:10-15,49-66,68-79,111-124,125-139 1b78 d1b78b_ B:10-15,49-66,68-79,111-124,125-139 2j4e d2j4ed1 D:7-14,48-65,66-78,110-123,129-141 2j4e d2j4ea1 A:7-15,48-65,67-78,110-122,129-141 2j4e d2j4eg1 G:7-14,48-65,67-78,110-122,129-143 2j4e d2j4eh1 H:6-14,48-65,67-78,110-122,129-141 2dvp d2dvpa1 A:1-7,41-54,60-71,103-116,117-131 2dvo d2dvoa1 A:1-7,41-54,60-71,103-116,117-131 2dvn d2dvna1 A:1-7,41-54,60-71,103-116,117-131 2zti d2ztia1 A:1-7,41-54,60-71,103-116,117-131 2amh d2amha1 A:10-16,52-75,83-95,116-131,136-150 1v7r d1v7ra_ A:1-7,41-54,60-71,103-116,117-131 2dvn d2dvnb1 B:1-7,41-54,60-71,103-116,117-131 58. d.103.1 CytB endotoxin-like CytB endotoxin-like core: beta-alpha(2)-beta-alpha(2)-beta(4); 3 layers: a/b/a 1cby d1cbya_ A:44-49,128-144,163-176,182-197,210-226 1pp6 d1pp6d_ D:3008-3012,3095-3110,3127-3142,3148-3163,3179-3193 1pp6 d1pp6b_ B:1008-1012,1095-1110,1128-1142,1148-1164,1177-1193 1vcy d1vcya_ A:8-12,95-110,127-142,148-162,177-193 1pp6 d1pp6a_ A:8-12,96-110,128-142,148-164,177-193 1pp0 d1pp0d_ D:3008-3012,3095-3110,3127-3142,3148-3162,3177-3193 1pp0 d1pp0a_ A:8-12,95-110,128-142,148-162,177-193 1vgf d1vgfb_ B:1008-1012,1095-1110,1128-1142,1148-1162,1177-1193 1vgf d1vgfa_ A:8-12,98-110,128-142,148-162,177-193 1pp6 d1pp6c_ C:2008-2012,2095-2110,2128-2142,2148-2162,2177-2193 1pp6 d1pp6e_ E:4008-4012,4095-4110,4128-4142,4148-4162,4179-4193