1. c.26.2 Adenine nucleotide alpha hydrolases-like share similar mode of ligand (Adenosine group) binding ! can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group !
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
2a1u d2a1ua1 A:20-26,34-48,106-112,136-140,163-169
1efv d1efva1 A:20-26,34-48,106-112,136-140,163-169
1t9g d1t9gr_ R:20-26,34-48,106-112,136-140,163-169
2a1t d2a1tr1 R:20-26,34-48,106-112,136-140,163-169
1o96 d1o96c_ C:1-7,36-53,114-120,145-151,177-183
1efp d1efpb_ B:1-7,36-53,115-121,149-154,175-181
2a1u d2a1ub1 B:4-10,39-56,118-124,152-157,178-184
1o96 d1o96e_ E:1-7,36-53,114-120,145-151,177-183
1o96 d1o96a_ A:1-7,36-53,114-120,145-151,177-183
1efv d1efvb_ B:4-10,39-56,118-124,152-157,178-184
1efp d1efpd_ D:1-7,36-53,115-121,149-154,175-181
1o94 d1o94c_ C:1-7,36-54,114-120,145-151,177-183
3clu d3cluc1 C:1-7,36-54,114-120,145-151,177-183
1t9g d1t9gs_ S:4-10,39-56,118-124,152-157,178-184
1o94 d1o94e_ E:1-7,36-54,114-120,145-151,177-183
3cls d3clsc1 C:1-7,36-54,114-120,145-151,177-183
1o96 d1o96q_ Q:1-7,36-54,114-120,145-151,177-183
1o95 d1o95e_ E:1-7,36-54,114-120,145-151,177-183
3clr d3clrc1 C:1-7,36-54,114-120,145-151,177-183
3clt d3cltc1 C:1-7,36-54,114-120,145-151,177-183
1o95 d1o95c_ C:1-7,36-54,114-120,145-151,177-183
1o97 d1o97c_ C:1-7,36-54,114-120,145-151,177-183
2a1t d2a1ts1 S:4-10,39-56,118-124,152-157,178-184
1o96 d1o96d1 D:1-7,15-29,89-95,118-125,150-156
1o94 d1o94d_ D:1-7,15-29,89-95,118-125,150-156
3clu d3clud1 D:1-7,15-29,89-95,118-125,150-156
3clt d3cltd1 D:1-7,15-29,89-95,118-125,150-156
1o96 d1o96f1 F:1-7,15-29,89-95,118-125,150-156
3clr d3clrd1 D:1-7,15-29,89-95,118-125,150-156
3cls d3clsd1 D:1-7,15-29,89-95,118-125,150-156
1o96 d1o96b1 B:1-7,15-29,89-95,118-125,150-156
1o97 d1o97d1 D:1-7,15-29,89-95,118-125,150-156
1o96 d1o96z1 Z:1-7,15-29,89-95,118-125,150-156
1o94 d1o94f_ F:1-7,15-29,89-95,118-125,150-156
1efp d1efpa1 A:2-7,15-27,85-91,114-119,142-148
1efp d1efpc1 C:2-7,15-27,85-91,115-119,142-148
2. b.81.1 Trimeric LpxA-like enzymes superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands !
Single-stranded left-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
2q4j d2q4jb1 B:392-397,402-411,420-426,427-433,438-444
2icx d2icxa1 A:392-397,402-411,420-426,427-433,438-444
1z90 d1z90b1 B:392-397,402-411,420-426,427-433,438-444
2icx d2icxb1 B:392-397,402-411,418-426,427-433,438-444
2icy d2icyb1 B:392-397,402-411,418-426,427-433,438-444
1z90 d1z90a1 A:392-397,402-411,418-426,427-433,438-444
2icy d2icya1 A:392-397,402-411,418-426,427-433,438-444
2q4j d2q4ja1 A:392-397,402-411,418-426,427-433,438-444
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 690 (enumeration index: query294) of S5
3oh2 A:495-501,509-518,528-535,536-541,546-552
2oef A:412-417,423-432,440-448,449-455,460-466
3ih5 B:1-7,15-33,90-96,120-131,162-168
3ih5 D:1-7,15-33,90-96,120-130,162-168
3ih5 A:2-7,15-33,90-96,120-131,162-168
3ih5 C:2-7,15-33,90-96,120-131,162-168
3ogz A:495-501,509-518,528-535,536-541,546-552
2oeg A:412-417,423-432,440-448,449-455,460-466
3gue B:407-412,418-427,435-443,444-450,455-461
3gue A:407-412,418-427,435-443,444-450,455-462
3oh3 A:495-501,509-518,528-535,536-541,546-552
3oh1 A:495-501,509-518,528-535,536-541,546-552
3oh4 A:495-501,509-518,528-535,536-541,546-552
3oh0 A:495-501,509-518,528-535,536-541,546-552
3fet A:1-8,9-21,68-74,97-104,127-132
3fet D:1-8,9-21,68-74,99-104,127-132