1.   c.119.1       DAK1/DegV-like  domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different !   
                   DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest]
                   1un8  d1un8b4  B:61-69,103-110,151-169,171-186,310-320
                   1un8  d1un8a4  A:61-69,103-110,151-169,171-186,310-320
                   1oi3  d1oi3a_  A:66-74,107-115,159-177,179-194,348-357
                   1uoe  d1uoea_  A:66-74,107-115,159-177,179-194,348-357
                   1uod  d1uoda_  A:66-74,107-115,159-177,179-194,348-357
                   1oi2  d1oi2a_  A:66-74,107-115,159-177,179-194,348-357
                   1uod  d1uodb_  B:66-74,107-115,159-177,179-194,348-357
                   1oi2  d1oi2b_  B:66-74,107-115,159-177,179-194,348-357
                   1oi3  d1oi3b_  B:66-74,107-115,159-177,179-194,348-357
                   1uoe  d1uoeb_  B:66-74,107-115,159-177,179-194,348-357

2.   d.58.26       GHMP Kinase, C-terminal domain  common fold is elaborated with additional secondary structures !   
                   Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
                   1vis  d1visa2  A:13-20,20-27,199-210,210-230,232-251
                   2r42  d2r42a2  A:18-25,25-32,242-258,257-286,287-309

3.   c.37.1        P-loop containing nucleoside triphosphate hydrolases  division into families based on beta-sheet topologies !   
                   P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
                   1oe9  d1oe9a2  A:191-207,219-230,318-338,392-424,586-593
                   1w7i  d1w7ia2  A:191-207,219-230,318-338,392-424,586-594

4.   a.172.1       Helical scaffold and wing domains of SecA    
                   Helical scaffold and wing domains of SecA multihelical; consists of 2 all-alpha subdomains
                   1tf2  d1tf2a2  A:176-190,350-356,571-621,704-738,747-778

List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1068 (enumeration index: query297.1789) of S5

3ihv  A:60-69,73-77,128-158,469-486,488-499
3ihv  B:60-69,73-77,128-158,469-486,488-499
2w4h  M:218-233,246-256,344-364,418-449,616-626
3pnq  A:56-64,97-105,149-167,169-184,336-345
3pnq  D:56-64,98-105,149-167,169-184,336-345
3pnq  B:56-64,98-105,149-167,169-184,336-345
3pnq  C:56-64,98-105,149-167,169-184,336-345
3pnm  C:56-64,98-105,149-167,169-184,336-345
3pnm  B:56-64,98-105,149-167,169-184,336-345
3pnm  A:56-64,97-105,149-167,169-184,336-345
3pnm  D:56-64,97-105,149-167,169-184,336-345
2ibm  A:176-190,349-356,571-620,703-738,744-778
3i5f  A:219-235,247-258,346-367,418-451,616-625
3i5i  A:219-236,247-258,346-367,418-451,616-625
3l22  A:62-77,78-82,132-159,396-413,415-426
3pnk  A:56-64,97-105,149-167,169-184,336-345
3pnk  B:56-64,97-105,149-167,169-184,336-345
2w4g  M:218-233,246-256,344-364,418-449,616-626
3pnl  A:56-64,97-105,149-167,169-184,336-345
3i5g  A:219-236,247-258,346-366,418-450,616-625
3jv2  A:176-190,350-356,571-620,704-738,747-778
3pno  B:56-64,98-105,149-167,169-184,336-345
3pno  A:56-64,97-105,149-167,169-184,336-345
3pno  C:56-64,97-105,149-167,169-184,336-345
3pno  D:56-64,97-105,149-167,169-184,336-345
3i5h  A:219-236,247-258,346-366,418-451,616-625
3c4a  A:9-24,263-267,279-300,301-313,358-371
3c4a  A:9-24,133-138,279-300,301-313,358-371
3c4a  A:9-24,263-267,279-300,312-337,358-371
1w8j  C:191-208,219-230,318-338,392-424,586-594
1w8j  B:199-208,219-230,318-338,392-424,586-594
1w8j  D:199-208,219-230,318-338,392-425,586-593
3kez  A:57-74,75-79,126-156,401-414,417-427
2otg  A:214-231,242-253,341-362,415-448,615-623
3lew  A:64-77,79-83,131-159,407-424,427-437
2bte  D:49-70,574-590,647-656,656-668,677-699
2p14  A:16-33,103-111,134-149,153-166,173-186
2p14  A:16-33,67-76,134-149,153-166,173-186
2w4a  M:218-233,246-256,344-364,418-449,616-626
2os8  A:222-232,242-253,341-361,415-448,615-624
3snx  B:68-81,82-86,132-159,396-413,416-426
3snx  A:68-81,82-86,132-159,396-413,416-426
2y8i  X:209-227,238-249,337-358,410-442,605-615
2ewf  A:412-429,504-512,538-556,560-578,581-601
2ewf  A:412-429,463-471,538-556,560-578,581-601
3din  B:221-235,393-400,645-666,743-784,787-816
3din  A:221-235,393-400,645-666,743-784,787-816
3dtp  B:218-235,247-258,345-366,419-451,618-628
2dfs  M:191-207,219-230,318-338,392-424,586-594
2dfs  A:191-207,219-230,318-338,392-424,586-594