1. c.56.5 Zn-dependent exopeptidases core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest !
Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
2gre d2grel2 L:24-40,63-71,185-205,235-242,327-345
1y7e d1y7ea2 A:34-50,89-96,253-269,329-339,441-458
1ylo d1ylod2 D:19-34,54-64,164-184,215-224,315-334
1ylo d1yloa2 A:19-34,54-64,164-184,215-224,315-334
1ylo d1ylob2 B:19-34,54-64,164-184,215-224,315-334
1ylo d1yloe2 E:19-34,54-64,164-184,215-224,315-334
1ylo d1yloc2 C:19-34,54-64,164-184,215-224,315-334
1ylo d1ylof2 F:19-34,54-64,164-184,215-224,315-334
1z2l d1z2lb1 B:35-53,77-85,93-114,186-194,391-412
2q43 d2q43a1 A:47-62,84-93,117-136,169-179,383-407
1xmb d1xmba1 A:68-83,105-114,138-157,190-200,404-428
2imo d2imob1 B:35-53,76-85,93-114,186-194,391-412
1ysj d1ysja1 A:27-42,65-75,99-118,151-161,357-379
1xfo d1xfoc2 C:27-38,59-70,180-198,229-239,330-348
1tkj d1tkja1 A:31-49,78-86,97-116,153-160,257-277
1xbu d1xbua1 A:31-49,78-86,94-116,153-160,257-277
1ysj d1ysjb1 B:27-42,65-75,99-118,151-161,357-379
2gre d2grea2 A:24-39,62-71,186-205,233-242,327-344
2gre d2grec2 C:24-39,62-71,186-205,233-242,327-344
1y0r d1y0ra2 A:27-38,60-70,180-197,229-239,330-351
1y0y d1y0ya2 A:27-38,59-70,180-197,229-239,330-351
1vhe d1vhea2 A:23-36,60-70,180-201,231-241,332-351
1lfw d1lfwa1 A:42-60,80-89,119-138,171-176,446-468
1cg2 d1cg2b1 B:59-78,105-114,141-160,194-203,394-414
1cg2 d1cg2a1 A:59-78,105-114,141-160,194-203,394-414
1xfo d1xfod2 D:27-38,59-69,180-197,229-239,330-351
1vho d1vhoa2 A:21-34,58-66,168-189,219-228,314-332
1xfo d1xfoa2 A:27-38,59-69,180-198,229-239,330-351
1cg2 d1cg2c1 C:59-78,102-114,141-160,194-203,394-414
1xfo d1xfob2 B:24-38,59-69,180-197,229-239,330-351
2fvg d2fvga2 A:15-28,53-61,164-181,213-224,314-332
1cg2 d1cg2d1 D:59-78,102-113,141-160,194-203,394-414
2. c.36.1 Thiamin diphosphate-binding fold (THDP-binding) there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules ! two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules !
Thiamin diphosphate-binding fold (THDP-binding) 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
2r8o d2r8oa1 A:356-373,453-461,495-509,511-519,585-592
2r5n d2r5nb1 B:356-373,454-461,495-509,512-519,585-592
2r5n d2r5na1 A:356-373,453-461,495-510,511-519,585-593
2r8p d2r8pb1 B:356-373,453-461,495-510,511-519,585-593
2r8o d2r8ob1 B:356-373,453-461,495-510,511-519,585-593
1itz d1itza2 A:367-384,467-474,508-523,525-532,598-605
2r8p d2r8pa1 A:356-373,454-461,495-510,512-519,585-592
1tkb d1tkba2 A:357-374,461-470,503-517,519-527,590-598
1tkc d1tkca2 A:357-374,461-470,503-517,519-527,590-598
1qgd d1qgdb1 B:356-373,454-461,495-510,512-519,585-592
1trk d1trka2 A:357-374,462-470,503-518,520-527,590-598
1r9j d1r9ja1 A:351-368,451-460,493-508,509-517,579-587
1ay0 d1ay0a2 A:357-374,461-470,503-517,519-527,590-598
1r9j d1r9jb1 B:351-368,451-460,493-508,509-517,579-587
1qgd d1qgda1 A:356-373,454-461,495-510,512-519,585-593
1itz d1itzb2 B:367-384,467-474,508-523,525-532,598-606
1itz d1itzc2 C:367-384,467-475,508-523,525-532,598-606
3. d.92.1 Metalloproteases ("zincins"), catalytic domain
Zincin-like contains mixed beta sheet with connection over free side of the sheet
1pwv d1pwvb2 B:551-575,582-587,591-610,627-633,679-702
1yqy d1yqya1 A:551-575,582-587,591-610,627-633,679-702
1pwp d1pwpb2 B:551-575,582-587,591-610,627-633,679-702
1pww d1pwwb2 B:551-575,582-587,591-610,627-633,679-702
1pwq d1pwqb2 B:551-575,582-587,591-610,627-633,679-702
1pwq d1pwqa2 A:551-575,582-587,591-610,627-633,679-702
1pww d1pwwa2 A:551-575,582-587,591-611,627-633,679-702
1pwv d1pwva2 A:551-575,582-587,591-611,627-633,679-702
1zxv d1zxvb2 B:551-575,582-587,591-611,627-633,679-702
1pwp d1pwpa2 A:551-575,582-587,591-611,627-633,679-702
1pwu d1pwua2 A:551-575,582-587,591-611,627-633,679-702
1pwu d1pwub2 B:551-575,582-587,591-611,627-633,679-702
1zxv d1zxva2 A:551-575,582-587,591-611,627-633,679-702
1j7n d1j7nb2 B:551-575,582-587,591-611,627-633,679-701
1j7n d1j7na2 A:551-575,582-587,591-611,627-633,679-702
1jky d1jkya2 A:551-575,582-587,590-611,627-633,679-701
4. c.127.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) the sheet topology is similar to those of the Periplasmic binding protein-like I domains !
F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213456
1u6j d1u6ji1 I:14-26,114-120,152-171,179-184,184-192
1u6j d1u6jc1 C:14-26,114-120,152-171,179-184,184-192
1u6i d1u6ii1 I:14-26,114-120,152-171,179-184,184-192
1u6i d1u6ic1 C:14-26,114-120,152-171,179-184,184-192
1u6i d1u6il1 L:14-26,114-120,152-171,180-184,184-192
1u6i d1u6if1 F:14-26,114-120,152-171,180-184,184-192
1u6j d1u6jf1 F:14-26,114-120,152-171,180-184,184-192
1u6j d1u6jl1 L:14-26,114-120,152-171,180-184,184-192
1u6i d1u6ij1 J:14-26,114-120,152-171,180-184,184-192
1u6i d1u6id1 D:14-26,114-120,152-171,180-184,184-192
1u6j d1u6jd1 D:14-26,114-120,152-171,180-184,184-192
1u6j d1u6jj1 J:14-26,114-120,152-171,180-184,184-192
1qv9 d1qv9b_ B:14-26,114-120,152-171,180-184,184-192
1u6k d1u6kb1 B:14-26,114-120,152-171,180-184,184-192
1qv9 d1qv9c_ C:14-26,114-120,152-171,180-184,184-192
1u6k d1u6kc1 C:14-26,114-120,152-171,180-184,184-192
5. c.41.1 Subtilisin-like
Subtilisin-like 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 2314567; left-handed crossover connection between strands 2 & 3
1kdz d1kdza_ A:38-53,58-64,74-93,97-105,285-305
1kdv d1kdva_ A:38-53,58-64,74-93,97-105,285-305
1kdy d1kdya_ A:38-53,58-64,74-93,97-105,285-305
1ga4 d1ga4a_ A:38-53,58-64,74-93,97-105,285-305
1ga6 d1ga6a_ A:38-53,58-64,74-93,97-105,285-305
1sio d1sioa_ A:38-50,55-61,74-91,93-100,276-296
1gt9 d1gt92_ 2:38-50,55-61,74-91,93-100,276-296
1t1i d1t1ia_ A:38-50,55-61,74-91,93-100,276-296
1sio d1siob_ B:38-50,55-61,74-91,93-100,276-296
1gtg d1gtg1_ 1:38-50,55-61,74-91,93-100,276-296
1gt9 d1gt91_ 1:38-50,55-61,74-91,93-100,276-296
1t1e d1t1ea1 A:227-239,244-250,263-280,282-289,465-485
1gtl d1gtl1_ 1:38-50,55-61,74-91,93-100,276-296
1gtj d1gtj2_ 2:38-50,55-61,74-91,93-100,276-296
1gtj d1gtj1_ 1:38-50,55-61,74-91,93-100,276-296
1sio d1sioc_ C:38-50,55-61,74-91,93-100,276-296
1gtl d1gtl2_ 2:38-50,55-61,74-91,93-100,276-296
1ke1 d1ke1a_ A:38-53,58-65,74-93,97-105,285-305
1nlu d1nlua_ A:38-53,58-65,74-93,97-105,285-305
1ke2 d1ke2a_ A:38-53,58-65,74-93,97-105,285-305
1ga1 d1ga1a_ A:38-53,58-65,74-93,97-105,285-305
6. c.26.1 Nucleotidylyl transferase
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
1jzs d1jzsa3 A:54-75,576-586,601-610,624-630,631-643
1jzq d1jzqa3 A:54-75,581-586,601-610,624-630,631-643
1ile d1ilea3 A:54-75,581-586,601-610,624-630,631-642
7. d.14.1 Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
2jt2 d2jt2a2 A:72-83,146-155,221-239,243-250,252-268
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1042 (enumeration index: query299) of S5
2rb7 B:23-42,66-74,99-122,156-162,339-358
2rb7 A:23-42,66-74,99-122,156-162,339-359
3ct9 B:29-44,66-75,104-123,155-162,335-353
3ct9 A:29-44,66-75,104-123,155-162,335-353
3pb9 X:109-127,161-170,186-202,261-270,361-381
3hyl A:356-373,454-463,496-510,512-520,588-596
3hyl B:356-373,454-463,496-510,512-520,588-595
3iqe F:14-26,114-120,152-171,180-184,184-192
3iqe C:14-26,114-120,152-171,180-184,184-192
3iqe E:14-26,114-120,152-171,180-184,184-192
3iqe D:14-26,114-120,152-171,180-184,184-192
3iqe B:14-26,114-120,152-171,180-184,184-192
3sgg A:79-97,144-150,157-171,190-196,199-208
3m49 A:356-373,454-463,496-510,512-520,588-595
3m49 B:356-373,454-463,496-510,512-520,588-595
3gux B:66-84,117-125,150-168,216-224,315-333
2pmf A:308-317,318-323,349-367,372-378,527-539
3t68 A:25-38,61-70,101-121,158-165,246-266
3l84 A:339-356,435-441,475-489,491-498,561-568
2qyv B:28-44,70-78,113-129,163-169,466-483
2qyv A:28-44,70-78,113-129,163-169,466-483
2pe3 C:30-44,62-72,183-200,232-242,329-347
2pe3 D:30-44,62-73,183-200,232-242,329-347
2zep B:81-99,132-142,159-175,241-248,340-360
2wzn A:30-44,62-73,183-200,232-242,329-347
2q5h A:308-317,318-323,349-367,372-378,527-539
3tx8 A:31-47,70-79,103-121,159-165,352-369
3t6m A:25-38,61-70,101-121,158-165,246-266
2ijz B:26-39,76-83,239-253,301-310,408-425
2ijz H:26-39,76-83,239-253,301-310,408-425
2ijz D:26-39,76-83,239-253,301-310,408-425
2ijz G:26-39,76-83,239-253,301-310,408-425
2ijz C:26-39,76-83,239-253,301-310,408-425
2ijz E:26-39,76-83,239-253,301-310,408-425
2ijz I:26-39,76-83,239-253,301-310,408-425
2ijz L:26-39,76-83,239-253,301-310,408-425
2ijz A:26-39,76-83,239-253,301-310,408-425
2ijz F:26-39,76-83,239-253,301-310,408-425
2ijz K:26-39,76-83,239-253,301-310,408-425
2ijz J:26-39,76-83,239-253,301-310,408-425
3pfo A:40-59,103-111,143-162,195-202,409-428
3pfo B:40-59,103-111,143-162,195-202,409-428
3isx A:18-30,53-61,166-183,214-224,314-330
2pme A:308-317,318-323,349-367,372-378,527-539
3si2 A:82-100,133-143,160-176,242-250,341-361
2x1l A:19-40,292-298,311-320,335-341,341-353
2x1l C:19-40,292-298,311-320,335-341,341-353
2x1l B:19-40,287-297,311-320,335-340,341-353
3isz A:24-37,60-69,100-120,157-164,356-376
3isz B:24-37,60-69,100-120,157-164,356-376
3m6l A:339-356,435-441,475-489,491-498,561-568
3pb4 X:109-127,160-170,186-202,261-270,361-381
3ki9 A:39-57,77-86,115-134,167-172,447-469
3tc8 B:64-82,115-124,144-166,213-221,311-329
3tc8 A:64-82,115-124,144-166,213-221,311-329
2zog A:34-56,92-101,132-151,189-195,452-473
2zt7 A:308-317,318-323,349-367,372-378,527-539
2x4g A:22-36,174-181,217-232,234-241,306-315
2wyr D:1012-1025,1046-1056,1163-1184,1214-1224,1306-1324
2wyr G:2005-2018,2039-2049,2156-2177,2207-2217,2299-2317
2wyr I:2668-2680,2703-2711,2817-2839,2869-2879,2961-2979
2wyr C:681-694,715-725,832-853,883-893,975-993
2wyr K:3330-3342,3365-3373,3480-3501,3531-3541,3623-3641
2wyr F:1674-1687,1708-1718,1825-1846,1876-1886,1968-1986
2wyr E:1343-1360,1377-1387,1494-1515,1545-1555,1637-1655
2wyr A:19-32,53-63,170-191,221-231,313-331
2wyr B:350-363,384-394,501-522,552-562,644-662
2wyr H:2337-2349,2372-2378,2487-2508,2538-2548,2630-2648
2wyr L:3660-3677,3696-3704,3811-3832,3862-3872,3954-3972
2wyr J:2998-3011,3032-3042,3149-3170,3200-3210,3292-3310
3ram C:35-50,75-82,94-113,150-158,351-376
3l6s A:40-56,97-106,272-292,349-359,457-475
3iqz A:14-26,114-120,152-171,180-184,184-192
3iqz D:14-26,114-120,152-171,180-184,184-192
3iqz E:14-26,114-120,152-171,180-184,184-192
3iqz F:14-26,114-120,152-171,180-184,184-192
3iqz C:14-26,114-120,152-171,180-184,184-192
3iqz B:14-26,114-120,152-171,180-184,184-192
3pb8 X:109-127,160-170,186-202,261-270,361-381
2zue A:135-156,415-421,436-457,485-491,492-499
3pbb A:81-98,132-142,159-175,241-248,340-360
3m7i A:339-356,435-441,475-489,491-498,561-568
3pb6 X:109-127,160-170,186-202,261-270,361-381
3m34 A:339-356,435-441,475-489,491-498,561-568
3pb7 X:109-126,161-170,186-202,261-270,361-381
2zof A:34-56,92-101,132-151,189-195,452-473
2zof B:34-56,92-101,132-151,189-195,452-473
2zt5 A:308-317,318-323,349-367,372-378,527-539
2zt8 A:308-317,318-323,349-367,372-378,527-539
2cf4 A:19-36,54-63,170-191,221-231,313-331
3cpx B:16-32,60-67,144-161,193-203,284-302
3cpx A:16-32,60-67,144-161,193-203,284-302
3cpx C:16-32,60-67,144-161,193-203,284-302
3ic1 A:24-37,60-69,100-120,157-164,356-376
3ic1 B:24-37,60-69,100-120,157-164,356-376
3io1 B:32-47,108-118,151-168,202-211,413-430
3io1 A:32-47,108-118,151-168,202-212,412-430
2q5i A:308-317,318-323,349-367,372-378,527-539
2zee B:81-99,132-142,159-175,241-248,340-360
3iqf A:14-26,114-120,152-171,180-184,184-192
3iqf D:14-26,114-120,152-171,180-184,184-192
3iqf E:14-26,114-120,152-171,180-184,184-192
3iqf L:14-26,114-120,152-171,180-184,184-192
3iqf F:14-26,114-120,152-171,180-184,184-192
3iqf H:14-26,114-120,152-171,180-184,184-192
3iqf K:14-26,114-120,152-171,180-184,184-192
3iqf C:14-26,114-120,152-171,180-184,184-192
3iqf G:14-26,114-120,152-171,180-184,184-192
3iqf I:14-26,114-120,152-171,180-184,184-192
3iqf J:14-26,114-120,152-171,180-184,184-192
3iqf B:14-26,114-120,152-171,180-184,184-192
3k9t A:34-49,179-188,192-214,243-251,334-355
3kl9 L:21-33,58-68,179-199,230-240,325-344
3kl9 F:21-36,59-67,179-199,230-240,325-344
3kl9 C:21-36,59-68,179-199,230-240,325-344
3kl9 D:21-36,58-68,179-199,230-240,325-344
3kl9 G:21-36,59-68,179-199,230-240,325-344
3kl9 E:21-36,59-68,179-197,230-240,325-344
3kl9 H:21-36,59-68,179-199,230-240,325-344
3kl9 A:21-36,58-68,179-199,230-240,325-343
3kl9 K:21-36,59-67,179-199,230-240,325-344
3kl9 B:21-36,59-68,179-199,230-240,325-343
3kl9 I:21-36,58-68,179-199,230-240,325-344
3kl9 J:21-36,59-68,179-199,230-240,325-344
2zt6 A:308-317,318-323,349-367,372-378,527-539
3dlj A:41-63,99-108,139-158,196-202,459-480
3dlj B:41-63,99-108,139-158,195-202,459-480