2. c.1.25 Monomethylamine methyltransferase MtmB TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1tv4 d1tv4a_ A:342-360,362-370,379-394,397-416,437-455 1tv3 d1tv3a_ A:342-360,362-370,379-394,397-416,437-455 1nth d1ntha_ A:342-360,362-370,379-394,397-416,437-455 1tv2 d1tv2a_ A:342-360,362-370,379-394,397-416,437-455 1l2q d1l2qa_ A:342-360,362-370,379-394,397-416,437-455 1tv4 d1tv4a_ A:308-326,329-337,342-360,397-416,437-455 1tv2 d1tv2a_ A:308-327,329-337,342-360,397-416,437-455 1nth d1ntha_ A:308-327,329-337,342-360,397-416,437-455 1tv3 d1tv3a_ A:308-327,329-337,342-360,397-416,437-455 1l2q d1l2qa_ A:308-327,329-337,342-360,397-416,437-455 4. a.69.3 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Left-handed superhelix core: 4-5 helices; bundle; left-handed superhelix 1q0h d1q0ha1 A:225-240,245-252,315-328,328-349,352-368 1q0l d1q0la1 A:225-240,245-252,315-328,328-349,352-368 1onp d1onpb1 B:225-240,245-252,315-328,328-349,352-368 1onp d1onpa1 A:225-240,245-252,315-328,328-349,352-368 1ono d1onob1 B:225-240,245-252,315-328,328-349,352-368 1t1s d1t1sb1 B:224-239,244-251,314-327,327-348,351-367 1t1r d1t1rb1 B:224-239,244-251,314-327,327-348,351-367 1ono d1onoa1 A:225-240,245-252,315-328,328-349,352-368 1k5h d1k5ha1 A:225-240,245-252,315-328,328-349,352-368 2egh d2eghb1 B:224-239,244-251,314-327,327-348,351-367 1jvs d1jvsb1 B:224-239,244-251,314-327,327-348,351-367 1onn d1onna1 A:225-240,245-252,315-328,328-349,352-368 1jvs d1jvsa1 A:224-239,244-251,314-327,327-348,351-366 1k5h d1k5hc1 C:225-240,245-252,315-328,328-349,352-367 1t1s d1t1sa1 A:224-239,244-251,314-327,327-348,351-366 1t1r d1t1ra1 A:224-239,244-251,314-327,327-348,351-366 1onn d1onnb1 B:225-240,245-252,315-328,328-349,352-368 1q0q d1q0qa1 A:225-240,245-252,315-328,328-349,352-368 2egh d2egha1 A:224-239,244-251,314-327,327-348,351-366 1q0q d1q0qb1 B:225-240,245-252,315-328,328-349,352-368 1r0l d1r0lc1 C:215-230,235-242,305-318,318-339,342-358 1r0l d1r0ld1 D:215-230,235-242,305-318,318-339,342-358 1r0l d1r0la1 A:215-230,235-242,305-318,318-339,342-358 1r0k d1r0kd1 D:215-230,235-242,305-318,318-339,342-358 1k5h d1k5hb1 B:225-240,245-252,315-328,328-349,352-367 1r0k d1r0kb1 B:215-230,235-242,305-318,318-339,342-358 1r0l d1r0lb1 B:215-230,235-242,305-318,318-339,342-358 1r0k d1r0ka1 A:215-230,235-242,305-318,318-339,342-358 1r0k d1r0kc1 C:215-230,235-242,305-318,318-339,342-358 7. c.19.1 FabD/lysophospholipase-like FabD/lysophospholipase-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 432156; strand 4 is antiparallel to the rest 1oxw d1oxwa_ A:37-60,71-77,77-88,98-110,127-139 1oxw d1oxwc_ C:2037-2060,2071-2077,2077-2088,2098-2110,2127-2139 1oxw d1oxwb_ B:1037-1060,1071-1077,1077-1088,1098-1110,1127-1139 1cjy d1cjyb2 B:1197-1216,1222-1228,1228-1240,1247-1262,1290-1305 1cjy d1cjya2 A:197-216,222-227,228-240,247-262,290-305 9. d.165.1 Ribosome inactivating proteins (RIP) Ribosome inactivating proteins (RIP) contains mixed beta-sheet 1qi7 d1qi7a_ A:12-28,49-58,159-181,180-191,198-208 1qcj d1qcja_ A:12-28,48-57,159-181,180-191,198-208 1pag d1paga_ A:12-28,48-57,159-181,180-191,198-208 1lp8 d1lp8a_ A:12-28,50-59,160-182,181-192,199-209 1pag d1pagb_ B:12-28,48-57,159-181,180-191,198-208 1lpd d1lpda_ A:12-28,50-59,160-182,181-192,199-209 1lpc d1lpca_ A:12-28,50-59,160-182,181-192,199-209 1bry d1bryz_ Z:10-26,46-55,143-165,164-175,182-192 1r4p d1r4pa_ A:9-25,48-56,151-172,171-183,192-202 1qcg d1qcga_ A:12-29,48-57,159-181,180-191,198-208 1qcj d1qcjb_ B:12-29,48-57,159-181,180-191,198-208 1rzo d1rzoc_ C:1017-1034,1056-1065,1159-1181,1180-1194,1200-1210 1j4g d1j4gb_ B:10-26,46-55,143-165,164-175,182-192 1paf d1pafa_ A:12-28,48-57,159-181,180-191,198-208 1qci d1qcia_ A:12-28,48-57,159-181,180-191,198-208 1qcg d1qcgb_ B:12-29,48-57,159-181,180-191,198-208 1qci d1qcib_ B:12-28,48-57,159-181,180-191,198-208 1hwo d1hwoa_ A:14-31,53-62,150-167,167-181,187-197 1gik d1gika_ A:12-28,48-57,158-180,179-190,197-207 1j1q d1j1qa_ A:12-28,48-57,158-180,179-190,197-207 2ga4 d2ga4a1 A:9-25,48-56,151-172,171-183,192-202 1giu d1giua_ A:10-26,46-55,143-165,164-175,182-192 1hwp d1hwpa_ A:14-31,53-62,150-168,167-181,187-197 1j4g d1j4gc_ C:10-26,46-55,143-165,164-175,182-192 1d6a d1d6ab_ B:12-28,48-57,159-181,180-191,198-208 1rl0 d1rl0a_ A:12-28,50-59,160-182,181-192,199-209 1nli d1nlia_ A:10-26,46-55,143-165,164-175,182-192 1d6a d1d6aa_ A:12-28,48-57,159-181,180-191,198-208 1paf d1pafb_ B:12-28,48-57,159-181,180-191,198-208 1j1r d1j1ra_ A:12-28,48-57,158-180,179-190,197-207 1gis d1gisa_ A:11-27,47-56,144-166,165-176,183-193 1bry d1bryy_ Y:10-26,46-55,143-165,164-175,182-192 1cf5 d1cf5b_ B:10-26,46-55,141-163,162-173,180-190 1j1s d1j1sa_ A:12-28,48-57,158-180,179-190,197-207 2jdl d2jdlb1 B:10-26,46-55,143-165,164-175,182-192 1apa d1apaa_ A:17-34,53-62,163-185,184-195,202-212 1mrh d1mrha_ A:10-26,46-55,143-165,164-175,182-192 1j4g d1j4gd_ D:10-26,46-55,143-165,164-175,182-192 1cf5 d1cf5a_ A:10-26,46-55,141-163,162-173,180-190 1uq4 d1uq4a_ A:17-34,56-65,160-182,181-195,201-211 2r3d d2r3da1 A:17-34,56-65,160-182,181-195,201-211 1j1m d1j1ma_ A:17-34,56-65,160-182,181-195,201-211 1uq5 d1uq5a_ A:17-34,56-65,160-182,181-195,201-211 1br5 d1br5a_ A:17-33,56-65,160-182,181-195,201-211 1ahb d1ahba_ A:10-26,46-55,143-165,164-175,182-192 1mrk d1mrka_ A:10-26,46-55,143-165,164-175,182-192 2pjo d2pjoa1 A:17-34,56-65,160-182,181-195,201-211 1tcs d1tcsa_ A:10-26,46-55,143-165,164-175,182-192 2r2x d2r2xa1 A:17-34,56-65,160-182,181-195,201-211 1j4g d1j4ga_ A:10-26,46-55,143-165,164-175,182-192 1aha d1ahaa_ A:10-26,46-55,143-165,164-175,182-192 1br6 d1br6a_ A:17-34,56-65,160-182,181-195,201-211 1mrg d1mrga_ A:10-26,46-55,143-165,164-175,182-192 1ahc d1ahca_ A:10-26,46-55,143-165,164-175,182-192 1mri d1mria_ A:10-26,46-55,143-165,164-175,182-192 1mrj d1mrja_ A:10-26,46-55,143-165,164-175,182-192 2p8n d2p8na1 A:17-34,56-65,160-182,181-195,201-211 1il9 d1il9a_ A:17-34,56-65,160-182,181-195,201-211 2aai d2aaia_ A:17-34,56-65,160-182,181-195,201-211 1il3 d1il3a_ A:17-34,56-65,160-182,181-195,201-211 1obs d1obsa_ A:17-34,56-65,160-182,181-195,201-211 1ifu d1ifua_ A:17-34,56-65,160-182,181-195,201-211 1mom d1moma_ A:10-26,46-55,143-165,164-175,182-192 1f8q d1f8qa_ A:10-26,46-55,143-165,164-175,182-192 1rzo d1rzoa_ A:1017-1036,1056-1065,1159-1181,1180-1194,1200-1210 1ifs d1ifsa_ A:17-34,56-65,160-182,181-195,201-211 1obt d1obta_ A:17-34,56-65,160-182,181-195,201-211 1ift d1ifta_ A:17-34,56-65,160-182,181-195,201-211 1il5 d1il5a_ A:17-34,56-65,160-182,181-195,201-211 1il4 d1il4a_ A:17-34,56-65,160-182,181-195,201-211 1rtc d1rtca_ A:17-34,56-65,160-182,181-195,201-211 1ggp d1ggpa_ A:13-29,50-60,146-169,168-182,188-198 1hwm d1hwma_ A:14-31,53-62,149-168,167-181,187-197 1abr d1abra_ A:13-29,50-58,147-169,168-182,188-198 1il5 d1il5b_ B:17-34,56-65,160-182,181-195,201-211 1dm0 d1dm0l_ L:9-26,47-56,151-171,171-182,193-203 1hwn d1hwna_ A:14-31,53-62,150-162,167-181,187-197 2r9k d2r9ka1 A:13-29,52-61,148-170,169-183,189-199 1oql d1oqla_ A:13-30,52-61,148-170,169-183,189-199 2jdl d2jdla1 A:10-26,46-55,146-159,164-175,182-192 2q3n d2q3na1 A:12-29,49-57,146-168,167-181,187-197 1pum d1puma_ A:13-30,52-61,148-170,169-183,189-199 1m2t d1m2ta_ A:13-30,52-61,148-170,169-183,189-199 1qd2 d1qd2a_ A:10-26,46-55,146-159,164-175,182-192 1puu d1puua_ A:13-30,52-61,148-170,169-183,189-199 1sz6 d1sz6a_ A:13-30,52-61,148-170,169-183,189-199 1dm0 d1dm0a_ A:9-26,47-56,151-172,171-183,193-203 1r4q d1r4qa_ A:9-25,47-56,151-172,171-185,193-203 1r4q d1r4ql_ L:9-25,47-56,151-172,171-185,193-203 1d8v d1d8va_ A:10-26,46-55,141-163,162-173,180-201 10. e.72.1 SSO1389-like SSO1389-like 2 domains; d1: [alpha/beta, central parallel beta-sheet of 6 strands, order 321456, Rossmann-like]; d2: [alpha+beta, cluster of helices and a small 4-stranded beta-sheet] 2i71 d2i71a1 A:98-118,120-127,129-153,235-250,266-283 2i71 d2i71b1 B:98-118,120-127,129-153,235-250,266-283 12. c.118.1 GckA/TtuD-like GckA/TtuD-like consists of two non-similar domains ! Domain 1 has parallel sheet of 6 strands, order 321456, Rossmann-like topology ! Domain 2 has mixed sheet of 6 strands, order 126345; strands 5 and 6 are antiparallel to the rest; some similarity to CbiF Domain 2 2b8n d2b8na1 A:279-298,304-314,324-338,378-386,387-396 2b8n d2b8nb1 B:279-298,304-314,324-338,378-386,387-396