1. b.81.4 Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain probable rudiment form of the LpxA-like hexapeptide domain
Single-stranded left-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
2cu2 d2cu2a1 A:287-295,295-302,304-312,313-320,322-335
2cu2 d2cu2a1 A:287-295,301-305,304-312,313-320,322-335
2. b.92.1 Composite domain of metallo-dependent hydrolases this domain is interrupted by the catalytic beta/alpha barrel domain !
Composite domain of metallo-dependent hydrolases pseudobarrel; mixed sheet of 7 strand folded upon itself and "buckled" by two beta-turns
2paj d2paja1 A:18-25,58-65,66-70,412-419,429-438
3be7 d3be7a1 A:12-17,31-37,52-57,367-373,379-386
2oof d2oofa1 A:11-17,37-45,61-66,373-379,382-390
2q09 d2q09a1 A:11-17,37-45,61-66,373-379,382-390
2gok d2gokb1 B:24-29,49-57,76-80,387-393,396-404
2puz d2puza1 A:24-29,49-57,76-80,387-393,396-404
2gok d2goka1 A:24-29,49-57,76-80,387-393,396-404
2puz d2puzb1 B:24-29,49-57,76-80,387-393,396-404
2puz d2puza1 A:24-29,68-73,76-80,387-393,396-404
2gok d2goka1 A:24-29,68-73,76-80,387-393,396-404
3. b.81.1 Trimeric LpxA-like enzymes superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands !
Single-stranded left-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
1v67 d1v67a_ A:111-118,123-130,129-135,138-143,145-170
1v3w d1v3wa_ A:111-118,123-130,129-135,138-143,145-170
2fko d2fkoa1 A:111-118,123-130,129-135,138-143,145-170
1xhd d1xhda_ A:110-117,122-129,128-134,137-143,144-169
4. e.8.1 DNA/RNA polymerases "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain !
DNA/RNA polymerases divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
1uvj d1uvja_ A:73-77,318-326,498-504,511-517,546-561
1hi8 d1hi8b_ B:73-77,318-326,498-504,511-516,546-561
1hi8 d1hi8a_ A:73-77,318-326,498-504,511-516,546-561
1hht d1hhtq_ Q:73-77,318-326,498-504,511-517,546-561
1hht d1hhtp_ P:73-77,318-326,498-504,511-517,546-561
1hht d1hhtr_ R:73-77,318-326,498-504,511-517,546-561
5. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1w8x d1w8xi_ I:107-113,156-170,256-266,370-382,382-390
1w8x d1w8xb_ B:107-113,156-170,256-266,370-382,382-390
1w8x d1w8xh_ H:107-113,156-170,256-266,370-382,382-390
1w8x d1w8xd_ D:107-113,156-170,256-266,370-382,383-390
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 352 (enumeration index: query309.398.2281) of S5
2x60 B:286-292,300-304,303-311,312-319,319-333
2x60 B:286-292,296-301,303-311,312-319,319-333
2x60 A:286-292,300-304,303-311,312-319,321-333
2x60 A:286-292,296-301,303-311,312-319,321-333
3r1w C:127-134,139-146,145-151,154-159,161-186
3r1w B:127-134,139-146,145-151,154-159,161-186
3r1w A:127-134,139-146,145-151,154-159,161-186
3r3r A:120-127,132-139,138-145,146-152,154-181
3gos A:198-205,225-230,229-240,245-256,265-273
3gos B:198-205,225-230,229-240,244-256,262-273
3gos C:198-205,225-230,229-240,245-256,262-273
3ixc A:114-121,126-133,132-138,141-147,148-170
2x5s A:286-292,300-304,303-311,312-319,321-333
2x5s B:286-292,300-304,303-311,312-319,319-333
2x5s B:286-292,296-301,303-311,312-319,319-333
2x5s A:286-292,296-301,303-311,312-319,321-333
2x65 A:286-293,296-301,303-311,312-319,321-334
2x65 B:286-293,300-304,303-311,312-319,321-334
2x65 A:286-293,300-304,303-311,312-319,321-334
2x65 B:286-293,296-301,303-311,312-319,321-334
2jlg A:73-77,318-326,498-504,511-517,546-561
2jlg B:73-77,318-326,498-504,511-517,546-561
3n2c M:9-15,30-37,53-58,373-379,385-392
2vun B:10-14,49-55,56-62,331-338,346-354
2vun A:10-14,49-55,56-62,331-338,346-354
2eg0 B:110-117,122-129,128-134,137-143,144-171
2eg0 A:110-117,122-129,128-134,137-143,144-170
2eg0 C:110-117,122-129,128-134,137-143,144-170
2x5z B:286-292,296-301,303-311,312-319,319-333
2x5z A:286-293,300-304,303-311,312-319,321-333
2x5z A:286-293,296-301,303-311,312-319,321-333
2x5z B:286-292,300-304,303-311,312-319,319-333
3bxy A:198-205,225-230,229-240,245-256,265-273