1. c.88.1 Glutaminase/Asparaginase
Glutaminase/Asparaginase consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each ! Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5 ! Domain 2 has parallel beta-sheet of 4 strands, order 1234
3eca d3ecad_ D:108-113,123-139,146-151,152-157,159-163
4eca d4ecac_ C:108-113,123-139,146-151,152-157,159-163
1zq1 d1zq1a2 A:197-203,213-228,233-239,245-251,253-257
1zq1 d1zq1b2 B:197-203,213-228,233-239,245-251,253-257
2d6f d2d6fb2 B:195-201,211-226,231-237,243-249,251-255
2d6f d2d6fa2 A:195-201,211-226,231-237,243-249,251-255
1jsr d1jsrd_ D:114-119,129-144,152-157,158-163,166-170
1wsa d1wsab_ B:112-117,127-142,150-155,156-161,164-168
1jsl d1jsld_ D:114-119,129-144,152-157,158-163,166-170
1jsr d1jsra_ A:114-119,129-144,152-157,158-163,166-170
1o7j d1o7ja_ A:114-119,129-144,152-157,158-163,166-170
1hg0 d1hg0c_ C:114-119,129-144,152-157,158-163,166-170
1jsr d1jsrb_ B:114-119,129-144,152-157,158-163,166-170
1o7j d1o7jd_ D:114-119,129-144,152-157,158-163,166-170
1hg0 d1hg0d_ D:114-119,129-144,152-157,158-163,166-170
1hg1 d1hg1d_ D:114-119,129-144,152-157,158-163,166-170
1hg0 d1hg0b_ B:114-119,129-144,152-157,158-163,166-170
1jsl d1jsla_ A:114-119,129-144,152-157,158-163,166-170
1hfw d1hfwc_ C:114-119,129-144,152-157,158-163,166-170
1hg1 d1hg1a_ A:114-119,129-144,152-157,158-163,166-170
1o7j d1o7jc_ C:114-119,129-144,152-157,158-163,166-170
1jsl d1jslb_ B:114-119,129-144,152-157,158-163,166-170
1hfk d1hfka_ A:114-119,129-144,152-157,158-163,166-170
1hg0 d1hg0a_ A:114-119,129-144,152-157,158-163,166-170
1hg1 d1hg1b_ B:114-119,129-144,152-157,158-163,166-170
1o7j d1o7jb_ B:114-119,129-144,152-157,158-163,166-170
2ocd d2ocdc1 C:110-116,126-143,145-152,153-158,161-165
1hfw d1hfwd_ D:114-119,129-144,152-157,158-163,166-170
1hfw d1hfwb_ B:114-119,129-144,152-157,158-163,166-170
1hfw d1hfwa_ A:114-119,129-144,152-157,158-163,166-170
1hfj d1hfja_ A:114-119,129-145,152-157,158-163,166-170
1hfj d1hfjc_ C:114-119,129-145,152-157,158-163,166-170
1jsr d1jsrc_ C:114-119,129-145,152-157,158-163,166-170
1jsl d1jslc_ C:114-119,129-145,152-157,158-163,166-170
1hg1 d1hg1c_ C:114-119,129-145,152-157,158-163,166-170
1hfk d1hfkc_ C:112-119,129-144,152-157,158-163,166-170
2ocd d2ocdb1 B:110-116,126-143,145-152,153-158,161-167
2ocd d2ocda1 A:110-116,126-143,145-152,153-158,161-167
2ocd d2ocdd1 D:110-116,126-143,145-152,153-158,161-167
2. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1bxr d1bxrh2 H:29-35,38-45,289-293,309-313,334-339
1cs0 d1cs0f2 F:29-35,38-45,289-293,309-313,334-339
1a9x d1a9xb2 B:1529-1535,1538-1545,1789-1793,1809-1813,1834-1839
1ce8 d1ce8b2 B:29-35,38-45,289-293,309-313,334-339
1c3o d1c3ob2 B:29-35,38-45,289-293,309-313,334-343
1c30 d1c30d2 D:29-35,38-45,289-293,309-313,334-339
1cs0 d1cs0b2 B:29-35,38-45,289-293,309-313,334-343
1c30 d1c30b2 B:29-35,38-45,289-293,309-313,334-343
1bxr d1bxrb2 B:29-35,38-45,289-293,309-313,334-339
1kee d1keeb2 B:29-35,38-45,289-293,309-313,334-343
1cs0 d1cs0d2 D:29-35,38-45,289-293,309-313,334-339
1bxr d1bxrf2 F:29-35,38-45,289-293,309-313,334-339
1m6v d1m6vh2 H:29-35,38-45,289-293,309-313,328-333
1m6v d1m6vb2 B:29-35,38-45,289-293,309-313,328-333
1m6v d1m6vd2 D:29-35,38-45,289-293,309-313,328-333
1ce8 d1ce8h2 H:29-35,38-45,289-293,309-313,328-333
1cs0 d1cs0f2 F:29-35,38-45,289-293,309-313,328-333
1c30 d1c30d2 D:29-35,38-45,289-293,309-313,328-333
1m6v d1m6vf2 F:29-35,38-45,289-293,309-313,328-333
1t36 d1t36h2 H:29-35,38-45,289-293,309-313,328-333
1bxr d1bxrd2 D:29-35,38-45,289-293,309-313,328-333
1c30 d1c30b2 B:29-35,38-45,289-293,309-313,328-333
1c30 d1c30h2 H:29-35,38-45,289-293,309-313,328-333
1kee d1keeh2 H:29-35,38-45,289-293,309-313,328-333
1c30 d1c30f2 F:29-35,38-45,289-293,309-313,328-333
3. b.28.1 Baculovirus p35 protein has a few helices inserted in loops !
Baculovirus p35 protein sandwich; 14 strands in 2 sheets; greek-key
1p35 d1p35c_ C:10-22,62-79,191-202,275-284,290-297
1p35 d1p35a_ A:10-22,60-79,191-202,275-284,290-297
2fun d2func1 C:1013-1022,1060-1079,1191-1202,1275-1284,1290-1297
1p35 d1p35b_ B:9-22,60-79,191-202,275-284,290-297
1i3s d1i3sb_ B:13-22,60-79,191-202,275-284,290-297
1i3s d1i3sa_ A:13-22,60-79,191-202,275-284,290-297
1i3s d1i3sc_ C:13-22,60-79,191-202,275-284,290-297
4. e.23.1 Acetyl-CoA synthetase-like
Acetyl-CoA synthetase-like 4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
1v25 d1v25b_ B:96-102,107-119,178-185,191-197,329-337
1v25 d1v25a_ A:96-102,107-119,178-185,191-197,329-337
5. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1uwi d1uwid1 D:257-270,271-287,322-331,332-337,346-351
1uwi d1uwic1 C:257-270,271-287,322-331,332-337,346-351
1uwi d1uwib1 B:257-270,271-287,322-331,332-337,346-351
2ceq d2ceqb1 B:257-270,271-287,322-331,332-337,346-351
1uwq d1uwqa_ A:257-270,271-287,322-331,332-337,346-351
1uwq d1uwqb_ B:257-270,271-287,322-331,332-337,346-351
1uwi d1uwia1 A:257-270,271-287,322-331,332-337,346-351
2cer d2cera1 A:257-270,271-287,322-331,332-337,346-351
2cer d2cerb1 B:257-270,271-287,322-331,332-337,346-351
1uws d1uwsa_ A:257-270,271-287,322-331,332-337,346-351
1uwr d1uwrb_ B:257-270,271-287,322-331,332-337,346-351
1uws d1uwsb_ B:257-270,271-287,322-331,332-337,346-351
1uwr d1uwra_ A:257-270,271-287,322-331,332-337,346-351
1gow d1gowa_ A:257-270,271-286,322-331,332-337,346-351
1gow d1gowb_ B:257-270,271-286,322-331,332-337,346-351
6. c.32.1 Tubulin nucleotide-binding domain-like
Tubulin nucleotide-binding domain-like 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
1fsz d1fsza1 A:185-193,203-228,247-257,330-339,349-354
7. c.69.1 alpha/beta-Hydrolases many members have left-handed crossover connection between strand 8 and additional strand 9 !
alpha/beta-Hydrolases core: 3 layers, a/b/a; mixed beta-sheet of 8 strands, order 12435678, strand 2 is antiparallel to the rest
2b9v d2b9vj2 J:360-367,388-408,416-424,426-432,592-603
2b9v d2b9vg2 G:360-367,388-408,416-424,426-432,592-603
2b9v d2b9vn2 N:360-367,388-408,416-424,426-432,592-603
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 692 (enumeration index: query310.397.2282) of S5
2vz8 A:1124-1128,1376-1386,1387-1396,1398-1407,1509-1519
2vz8 B:1124-1128,1374-1386,1387-1396,1398-1406,1509-1519
3e7w A:77-83,87-99,146-154,156-164,287-297
3ozx B:99-106,111-121,279-288,290-299,315-319
3ozx A:99-106,111-121,279-288,290-299,315-319
2him D:111-116,126-142,146-152,153-158,161-166
2him C:110-116,126-143,145-152,153-158,161-166
2him B:111-116,126-142,146-152,153-158,161-166
2him A:110-116,126-143,145-152,153-158,161-166
2gn6 A:164-172,209-224,226-233,281-287,314-318
2gn6 B:164-172,209-224,226-233,281-287,313-318
3apg D:258-271,272-288,300-315,318-322,331-336
3apg B:258-271,272-288,300-316,317-322,331-336
3apg A:258-271,272-288,300-316,317-322,331-336
3ipl C:71-76,81-93,163-170,174-182,308-316
3ipl B:71-76,81-93,163-170,176-182,308-316
3ipl A:71-76,81-93,163-171,175-182,308-316
1wls B:102-108,118-134,136-143,144-149,151-156
1wls A:102-108,118-134,136-143,144-149,151-155
3g7s A:99-105,110-122,180-187,193-199,339-345
3g7s B:99-105,110-122,181-187,193-199,339-345
2gn4 A:164-172,209-224,226-233,281-287,314-318
2gn4 B:164-172,209-224,226-233,281-287,313-318
2pjz A:31-37,42-52,195-201,202-209,226-233
1wnf B:102-108,118-134,136-143,144-149,151-155
1wnf A:102-108,118-134,136-143,144-149,151-155
3nxk D:114-119,129-144,152-157,158-163,166-171
3nxk F:114-119,129-144,152-157,158-163,166-171
3nxk C:114-119,129-144,152-157,158-163,166-171
3nxk B:114-119,129-144,152-157,158-163,166-171
3a9v A:98-104,109-121,181-187,193-199,336-342
3ntx A:110-116,126-143,145-152,153-158,161-167
3ntx B:110-116,126-143,145-152,153-158,161-167
2hln K:114-119,129-145,152-157,158-163,166-170
2hln I:114-119,129-145,152-157,158-163,166-170
2hln F:114-119,129-145,152-157,158-163,166-170
2hln A:114-119,129-145,152-157,158-163,166-170
2hln B:114-119,129-145,152-157,158-163,166-170
2hln J:114-119,129-145,152-157,158-163,166-170
2hln L:114-119,129-145,152-157,158-163,166-170
2hln D:114-119,129-145,152-157,158-163,165-170
2hln H:114-119,129-145,152-157,158-163,166-170
2hln G:114-119,129-145,152-157,158-163,166-170
2hln C:114-119,129-145,152-157,158-163,166-170
2hln E:114-119,129-145,152-157,158-163,166-170
3bk7 A:103-110,115-125,282-290,293-302,318-322
2gvn A:114-119,129-145,152-157,158-163,166-170
2gvn H:114-119,129-145,152-157,158-163,166-170
2gvn D:114-119,129-145,152-157,158-163,166-170
2gvn B:114-119,129-145,152-157,158-163,166-170
2gvn G:114-119,129-145,152-157,158-163,166-170
2gvn E:114-119,129-145,152-157,158-163,166-170
2gvn F:114-119,129-145,152-157,158-163,166-170
2gvn C:114-119,129-145,152-157,158-163,166-170
1yqt A:99-106,111-121,278-287,289-298,314-318
2vz9 B:1124-1128,1374-1386,1387-1396,1398-1406,1509-1519
3ni2 A:98-104,109-121,180-187,193-199,336-342
2jk0 D:114-119,129-145,152-157,158-163,166-170
2jk0 F:114-119,129-145,152-157,158-163,166-170
2jk0 G:114-119,129-145,152-157,158-163,166-170
2jk0 E:114-119,129-145,152-157,158-163,166-170
2jk0 A:114-119,129-145,152-157,158-163,166-170
2jk0 B:114-119,129-145,152-157,158-163,166-170
2jk0 C:114-119,129-145,152-157,158-163,166-170
2jk0 H:114-119,129-144,152-157,158-163,166-170
3a9u A:98-104,109-121,181-188,192-199,336-342
1zcf F:114-119,129-145,152-157,158-163,165-169
1zcf G:114-119,129-145,152-157,158-163,166-170
1zcf E:114-119,129-144,152-157,158-163,165-169
1zcf H:114-119,129-145,152-157,158-163,165-169
2p2n D:110-116,126-142,146-152,153-158,161-165
2p2n B:110-116,126-143,145-152,153-158,161-166
2p2n C:110-116,126-143,145-152,153-158,161-166
2p2n A:110-116,126-143,145-152,153-158,161-166
1w18 A:174-184,205-214,219-232,236-248,307-315
1w18 A:174-184,205-214,219-232,236-248,482-490
1w18 B:174-184,205-214,219-231,236-248,482-490
1w18 B:174-184,205-214,219-231,236-248,307-315
2p2d B:110-116,126-143,145-152,153-158,161-167
2p2d D:110-116,126-143,145-152,153-158,161-167
2p2d A:110-116,126-143,145-152,153-158,161-167
2p2d C:110-116,126-143,145-152,153-158,161-167
2gn9 B:164-172,209-224,226-233,281-287,313-317
2gn9 A:164-172,209-224,226-233,281-286,313-317
2gna A:164-172,209-224,226-233,281-287,313-317
2gna B:164-172,209-224,226-233,281-287,313-317
1ce8 F:29-35,38-46,289-293,309-313,328-333
1jdb F:29-35,38-46,289-293,309-313,334-339