1. d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase beta-alpha-beta(3); 2 layers: alpha/beta
1sqi d1sqia2 A:273-285,292-306,313-321,322-328,329-340
1sqi d1sqib2 B:273-285,292-306,313-321,322-328,329-340
1sp8 d1sp8b2 B:308-323,332-344,348-359,360-366,367-378
1tfz d1tfza2 A:294-309,318-330,334-345,346-352,353-364
1t47 d1t47b2 B:277-289,296-303,313-321,322-328,329-339
1cjx d1cjxa2 A:247-259,267-279,284-292,293-301,302-314
1cjx d1cjxb2 B:247-259,267-279,284-292,293-301,302-314
1sp8 d1sp8d2 D:308-323,332-344,348-359,360-366,367-378
1cjx d1cjxc2 C:247-259,267-279,284-292,293-301,302-314
1cjx d1cjxd2 D:247-259,267-279,284-292,293-301,302-314
1t47 d1t47a2 A:277-289,296-303,313-321,322-328,329-340
1sp9 d1sp9a_ A:315-330,339-351,355-366,367-373,374-385
1sp8 d1sp8c2 C:308-323,332-344,348-359,360-366,367-378
1sp8 d1sp8a2 A:308-323,332-344,348-359,360-366,367-377
1sqd d1sqda2 A:294-309,318-330,334-345,346-352,353-364
1tg5 d1tg5a2 A:294-309,318-330,334-345,346-352,353-364
2. e.8.1 DNA/RNA polymerases "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain !
DNA/RNA polymerases divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
1s0v d1s0vc_ C:437-445,453-469,507-525,533-538,812-817
2pi4 d2pi4a1 A:437-445,453-469,507-525,532-537,812-817
1h38 d1h38b_ B:437-445,453-469,507-525,532-538,812-817
1h38 d1h38d_ D:437-445,453-469,507-525,532-538,812-817
1h38 d1h38a_ A:437-445,453-469,507-525,532-538,812-817
1s0v d1s0vb_ B:437-445,453-469,507-525,533-538,812-817
3. c.94.1 Periplasmic binding protein-like II Similar in architecture to the superfamily I but partly differs in topology !
Periplasmic binding protein-like II consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication ! mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
1hsj d1hsja2 A:63-74,82-90,90-99,105-112,257-268
1hsj d1hsjb2 B:63-74,82-90,90-99,105-112,257-268
4. h.4.1 Variant surface glycoprotein (N-terminal domain)
Antiparallel coiled-coil this is not a true fold; contains at least two very long antiparallel helices
2vsg d2vsgb_ B:7-23,58-113,129-138,211-215,220-226
2vsg d2vsga_ A:6-56,58-113,129-138,211-215,220-225
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1158 (enumeration index: query323) of S5
2zym A:81-92,100-108,108-117,123-137,279-288
3c3l B:436-443,457-472,528-544,555-560,951-956
3c3l A:436-444,457-472,528-544,555-561,951-956
3puk A:9-27,38-49,50-58,140-144,146-150
3puk B:9-27,38-49,50-58,140-144,146-150
3ob4 A:63-74,82-90,90-99,105-112,257-268
3c2p A:436-444,457-472,528-544,555-561,951-956
3c2p B:436-443,457-472,528-544,555-560,951-956
3spa A:818-826,834-850,890-907,918-922,1151-1156
3puj B:5-23,34-45,46-54,137-141,143-147
3q23 A:436-444,457-472,528-544,555-560,951-956
3q23 B:436-444,457-472,528-544,555-560,951-956
3ef7 B:64-75,83-91,91-100,106-113,260-269
3isq A:273-285,292-306,313-321,322-328,329-340
2pjx A:9-27,38-49,50-58,140-144,146-150
2pjx B:9-27,38-49,50-58,140-144,146-150
3q0a B:436-444,457-472,528-544,555-560,951-956
3q0a A:436-443,457-472,528-544,554-561,951-957
3c46 A:436-443,457-472,528-544,555-561,951-956
3c46 B:436-444,457-472,528-544,555-560,951-956
2po4 A:436-443,457-472,528-544,555-560,951-956
2r5v A:248-260,267-279,284-292,293-298,300-309
2r5v B:248-260,267-279,284-292,293-298,300-309
3l2j B:-281--270,-262--254,-254--245,-239--232,-85--76
3l2j A:-281--270,-262--254,-254--245,-239--232,-85--76
3q22 A:436-444,457-472,528-544,555-560,951-956
3q22 B:436-444,457-472,528-544,555-560,951-956
2zyo A:81-92,100-108,108-117,123-137,279-288
2zyn A:81-92,100-108,108-117,123-137,279-288
2zyk B:81-92,100-108,108-117,123-130,279-288
2zyk C:81-92,100-108,108-117,123-137,279-288
2zyk D:81-92,100-108,108-117,123-137,279-288
3q24 B:436-444,457-472,528-544,555-560,951-956
3q24 A:436-443,457-472,528-544,555-560,951-956
1sp9 B:315-330,339-351,355-366,367-373,374-385