1. a.26.1 4-helical cytokines there are two different topoisomers of this fold with different entanglements of the two crossover connections !
4-helical cytokines core: 4 helices; bundle, closed; left-handed twist; 2 crossover connections
1fyh d1fyhd1 D:27-37,38-61,66-83,285-298,302-322
1eku d1ekua1 A:27-37,38-64,63-83,205-218,222-242
1eku d1ekub1 B:27-37,38-64,63-83,205-218,232-241
1fyh d1fyha1 A:27-37,38-61,63-83,285-298,312-322
1b5l d1b5la_ A:39-46,49-75,79-101,114-135,137-164
2hym d2hymb1 B:39-48,49-69,77-102,109-134,136-161
1lk3 d1lk3b_ B:49-58,60-76,84-109,118-132,142-157
1lk3 d1lk3a_ A:49-58,60-76,84-109,118-132,142-157
2. f.24.1 Cytochrome c oxidase subunit I-like
Cytochrome c oxidase subunit I-like 12 transmembrane helices in an approximate threefold rotational symmetric arrangement
1qle d1qlea_ A:27-60,263-298,370-396,405-432,441-470
1fft d1ffta_ A:53-86,271-307,378-404,413-440,449-478
1fft d1fftf_ F:53-86,271-307,378-404,413-440,449-478
2dyr d2dyrn1 N:11-44,227-263,335-361,370-397,406-435
2dyr d2dyra1 A:11-44,227-263,335-361,370-397,406-435
1v54 d1v54a_ A:11-44,227-263,335-361,370-397,406-435
1v54 d1v54n_ N:11-44,227-263,335-361,370-397,406-435
2eil d2eila1 A:11-44,227-263,335-361,370-397,406-435
3dtu d3dtua1 A:25-58,271-307,378-404,413-440,449-478
2dys d2dysa1 A:11-44,227-263,335-361,370-397,406-435
2dys d2dysn1 N:11-44,227-263,335-361,370-397,406-435
3dtu d3dtuc1 C:25-58,271-307,378-404,413-440,449-478
1occ d1occn_ N:11-44,227-263,335-361,370-397,406-435
1occ d1occa_ A:11-44,227-263,335-361,370-397,406-435
2gsm d2gsma1 A:25-58,271-307,378-404,413-440,449-478
2gsm d2gsmc1 C:25-58,271-307,378-404,413-440,449-478
1ocz d1ocza_ A:11-44,227-263,335-361,370-397,406-435
1m57 d1m57a_ A:25-58,271-307,378-404,413-440,449-478
1ocz d1oczn_ N:11-44,227-263,335-361,370-397,406-435
1v55 d1v55n_ N:11-44,227-263,335-361,370-396,406-435
1v55 d1v55a_ A:11-44,227-263,335-361,370-396,406-435
2eij d2eijn1 N:11-44,227-263,335-361,370-396,406-435
2eij d2eija1 A:11-44,227-263,335-361,370-396,406-435
2occ d2occn_ N:11-44,227-263,335-361,370-397,406-435
1m56 d1m56g_ G:25-58,271-307,378-404,413-440,449-478
2occ d2occa_ A:11-44,227-263,335-361,370-397,406-435
2eik d2eika1 A:11-44,227-263,335-361,370-396,406-435
2eik d2eikn1 N:11-44,227-263,335-361,370-396,406-435
1m56 d1m56a_ A:25-58,271-307,378-404,413-440,449-478
2ein d2eina1 A:11-44,227-263,335-361,370-402,406-435
2ein d2einn1 N:11-44,227-263,335-361,370-402,406-435
2eim d2eimn1 N:11-44,227-263,335-361,370-402,406-435
2eim d2eima1 A:11-44,227-263,335-361,370-402,406-435
2eil d2eiln1 N:11-44,227-263,335-361,370-402,406-435
1oco d1ocoa_ A:11-44,227-263,335-361,370-396,406-435
1oco d1ocon_ N:11-44,227-263,335-361,370-396,406-435
1ocr d1ocra_ A:11-44,227-263,335-361,370-402,406-435
1ocr d1ocrn_ N:11-44,227-263,335-361,370-402,406-435
1ar1 d1ar1a_ A:27-60,263-299,370-396,405-437,441-470
1m57 d1m57g_ G:25-58,271-307,378-404,413-445,449-478
3. a.127.1 L-aspartase-like
L-aspartase-like multihelical, consists of three all-alpha domains
1w27 d1w27a_ A:262-295,302-310,311-328,350-380,695-708
1w27 d1w27b_ B:262-295,302-310,311-328,350-380,695-708
4. a.69.2 Ypt/Rab-GAP domain of gyp1p
Left-handed superhelix core: 4-5 helices; bundle; left-handed superhelix
2g77 d2g77a1 A:282-295,330-344,353-372,377-397,414-437
1fkm d1fkma1 A:282-295,329-344,353-372,377-397,414-437
5. i.5.1 Photosystems
Photosystems
1qzv d1qzvp_ P:438-471,535-566,593-625,640-649,648-668
1qzv d1qzva_ A:438-471,535-566,593-625,640-649,648-668
1qzv d1qzvq_ Q:414-447,513-543,571-604,605-616,615-634
1qzv d1qzvb_ B:414-447,513-543,571-604,605-616,615-634
6. f.29.1 Photosystem I subunits PsaA/PsaB
Photosystem I subunits PsaA/PsaB core:11 transmembrane helices
1jb0 d1jb0a_ A:436-469,532-563,590-622,637-646,645-665
1jb0 d1jb0b_ B:417-450,519-549,577-610,611-622,621-640
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1223 (enumeration index: query328.431.697.1749.2196) of S5
3es5 A:76-95,101-128,139-146,150-160,174-195
3es5 B:76-95,101-128,136-146,150-160,174-195
2qq8 A:388-401,445-458,469-487,492-506,507-521
3ag3 A:11-44,227-263,335-361,370-396,406-435
3ag3 N:11-44,227-263,335-361,370-396,406-435
3mkt B:66-77,84-99,135-155,231-244,288-310
3mkt A:66-77,84-99,135-155,231-244,282-310
2wse B:414-447,513-541,571-605,605-616,615-635
2wse A:438-471,534-563,593-626,640-649,648-668
3abm N:11-44,227-263,335-361,370-397,406-435
3abm A:11-44,227-263,335-361,370-402,406-435
3om3 C:25-58,271-307,378-404,413-439,449-478
3om3 A:25-58,271-307,378-404,413-439,449-478
3aso N:11-44,227-263,335-361,370-397,406-435
3aso A:11-44,227-263,335-361,370-397,406-435
3iyu Z:499-512,526-535,539-555,632-649,652-667
3iyu Y:497-512,526-535,538-555,632-649,657-667
3iyu X:492-512,526-535,539-555,632-649,657-667
3kdz A:207-240,247-256,257-272,307-337,524-535
3kdz B:207-240,247-256,257-272,307-337,524-535
3sk9 A:54-76,104-121,123-135,158-177,190-211
3sk9 A:20-39,54-76,158-177,190-211,222-242
3abl N:11-44,227-263,335-361,370-397,406-435
3abl A:11-44,227-263,335-361,370-397,406-435
2o01 A:438-472,534-565,593-625,640-649,648-668
3qye A:802-822,842-855,867-885,890-905,905-921
3qye B:802-822,842-855,867-885,890-905,905-921
3hzj B:543-551,572-585,597-615,620-634,635-651
3lw5 A:438-471,534-563,593-624,640-649,648-668
3lw5 B:414-447,513-541,571-604,605-616,615-635
2qfz B:224-237,273-287,295-314,319-338,352-375
2qfz A:224-237,273-287,295-314,319-338,352-375
2y69 N:11-44,227-263,335-361,370-397,406-435
2y69 A:11-44,227-263,335-361,370-402,406-435
3qyb A:921-941,963-976,986-1004,1009-1023,1024-1040
3ag4 A:11-44,227-263,335-361,370-402,406-435
3ag4 N:11-44,227-263,335-361,370-402,406-435
2zxw N:11-44,227-263,335-361,370-397,406-435
2zxw A:11-44,227-263,335-361,370-397,406-435
2kz1 A:39-48,49-69,77-102,109-134,136-156
3omi A:25-58,271-307,378-404,413-440,449-478
3omi C:25-58,271-307,378-404,413-440,449-478
3s4l A:51-72,90-108,109-123,156-168,200-216
3i7a A:1-18,86-104,107-140,145-171,176-188
3omn A:25-58,271-307,378-404,413-445,449-478
3omn C:25-58,271-307,378-404,413-439,449-478
2wsf B:414-447,513-541,571-605,605-616,615-629
2wsf A:438-471,534-563,593-626,640-649,648-668
2wsc A:438-471,534-563,593-626,640-649,648-668
2wsc B:414-447,513-541,571-605,605-616,615-629
3piv B:36-46,47-69,78-103,110-131,133-160
3ag2 A:11-44,227-263,335-361,370-397,406-435
3ag2 N:11-44,227-263,335-361,370-397,406-435
2ybb L:11-44,227-263,335-361,370-397,406-435
2rjr B:207-240,247-256,257-272,307-337,524-535
3ag1 N:11-44,227-263,335-361,370-397,406-435
3ag1 A:11-44,227-263,335-361,370-397,406-435
3oma A:25-58,271-307,378-404,413-440,449-478
3oma C:25-58,271-307,378-404,413-440,449-478
3o0r B:10-44,266-298,304-332,341-356,379-418
3o0r B:10-44,194-231,304-332,341-356,379-418
3abk A:11-44,227-263,335-361,370-396,406-435
3abk N:11-44,227-263,335-361,370-397,406-435
3pcq B:417-450,519-549,577-610,611-622,621-640
3pcq A:436-469,532-563,590-622,637-646,645-665
3hb3 A:27-60,263-299,370-396,405-437,441-470
2lag A:39-48,49-69,77-102,109-134,136-156
2yii A:233-266,273-281,282-299,321-351,663-674
3mku A:60-77,84-107,133-155,231-253,282-310
3mku B:66-81,84-107,140-155,231-253,282-310
3asn N:11-44,227-263,335-361,370-397,406-435
3asn A:11-44,227-263,335-361,370-397,406-435
3skd A:54-76,104-121,123-135,158-177,190-211
3skd A:20-39,54-76,158-177,190-211,222-242
3fye A:25-58,271-307,378-404,413-439,449-478
3fye C:25-58,271-307,378-404,413-439,449-478
3fyi A:25-58,271-307,378-404,413-439,449-478
3fyi C:25-58,271-307,378-404,413-439,449-478
3fyi A:25-58,341-373,378-404,413-439,449-478
3ehb A:27-60,263-299,370-396,405-432,441-470
3bvd A:15-48,220-256,343-369,378-400,414-446