7. b.116.1 Viral chemokine binding protein m3 Viral chemokine binding protein m3 consists of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds 1ml0 d1ml0a_ A:28-39,103-114,150-160,167-174,179-188 2nyz d2nyzb1 B:28-39,103-114,150-160,167-174,179-189 1mkf d1mkfa_ A:28-39,103-114,150-160,166-174,179-188 2nz1 d2nz1a1 A:28-39,103-114,150-160,167-174,179-188 2nz1 d2nz1b1 B:28-39,103-114,150-160,167-174,179-189 1mkf d1mkfb_ B:28-39,103-114,150-160,167-174,179-189 2nz1 d2nz1x1 X:28-39,103-114,150-160,167-174,179-189 2nyz d2nyza1 A:28-39,103-114,150-160,167-174,179-188 14. b.2.6 Cytochrome f, large domain Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold 1e2z d1e2zb1 B:19-26,70-77,111-119,124-134,144-155 1ctm d1ctma1 A:19-26,69-77,111-120,124-133,144-155 1cfm d1cfmc1 C:19-26,69-77,111-120,124-133,144-155 1e2v d1e2va1 A:19-26,69-77,111-120,124-133,144-155 1tu2 d1tu2b1 B:20-27,70-78,112-121,125-134,145-156 1cfm d1cfma1 A:19-26,69-77,111-120,124-134,144-155 1ewh d1ewhb1 B:19-26,69-77,111-120,124-134,144-155 1hcz d1hcza1 A:19-26,69-77,111-120,124-134,144-155 1cfm d1cfmb1 B:19-26,69-77,111-120,124-134,144-155 1e2z d1e2za1 A:19-26,69-77,111-120,124-134,144-155 1q90 d1q90a1 A:19-26,69-77,111-120,124-134,144-155 1ewh d1ewhc1 C:19-26,69-77,111-120,124-134,144-155 1e2v d1e2vc1 C:619-626,669-677,711-720,724-734,744-755 1vf5 d1vf5p1 P:20-27,70-79,112-117,125-134,145-156 1vf5 d1vf5c1 C:20-27,70-79,112-117,125-134,145-156 1e2w d1e2wa1 A:19-26,69-77,111-120,124-134,144-155 1ewh d1ewha1 A:19-26,69-77,111-120,124-134,143-155 1e2w d1e2wb1 B:19-26,69-77,111-120,124-134,144-155 1e2z d1e2zc1 C:19-26,69-77,111-120,124-134,144-155 1e2v d1e2vb1 B:319-326,369-377,411-420,424-434,443-455 1ci3 d1ci3m1 M:19-26,69-77,112-121,126-135,145-156 16. b.19.1 Viral protein domain forms homotrimers ! Viral protein domain sandwich; 9 strands in 2 sheets; jelly-roll; form trimers 2vis d2visc_ C:104-116,174-186,227-239,240-249,250-255 2vir d2virc_ C:104-116,174-186,227-239,240-249,250-255 2vit d2vitc_ C:104-116,174-186,227-239,240-249,250-255 1ha0 d1ha0a1 A:104-116,174-186,227-239,240-248,250-255 1ken d1kena_ A:104-116,174-186,228-239,241-249,250-255 2hmg d2hmgc_ C:104-116,174-186,227-239,240-249,250-255 2hmg d2hmge_ E:104-116,174-186,227-239,240-249,250-255 2hmg d2hmga_ A:104-116,174-186,227-239,240-249,250-255 4hmg d4hmga_ A:104-116,174-186,227-239,240-249,250-255 4hmg d4hmgc_ C:104-116,174-186,227-239,240-249,250-255 3hmg d3hmge_ E:104-116,174-186,227-239,240-249,250-255 3hmg d3hmgc_ C:104-116,174-186,227-239,240-249,250-255 3hmg d3hmga_ A:104-116,174-186,227-239,240-249,250-255 4hmg d4hmge_ E:104-116,174-186,227-239,240-249,250-255 1mqn d1mqnd_ D:104-116,174-186,227-239,241-249,250-255 1mqm d1mqmd_ D:104-116,174-186,227-239,241-249,250-255 1mqm d1mqmg_ G:104-116,174-186,227-239,240-249,250-255 1mqn d1mqng_ G:104-116,174-186,227-239,240-249,250-255 1rvz d1rvzi_ I:101-112,174-186,227-239,240-249,250-255 1mqm d1mqma_ A:104-116,174-186,227-239,240-249,250-255 1mqn d1mqna_ A:104-116,174-186,227-239,240-249,250-255 1qfu d1qfua_ A:104-116,174-186,227-239,240-249,250-255 1rvx d1rvxa_ A:101-112,174-186,227-239,240-248,250-255 1rvx d1rvxg_ G:101-112,174-186,227-239,240-249,250-255 5hmg d5hmgc_ C:104-116,174-186,227-239,240-249,250-255 1mql d1mqla_ A:104-116,174-186,227-239,240-249,250-255 5hmg d5hmge_ E:104-116,174-186,227-239,240-249,250-255 1mql d1mqld_ D:104-116,174-186,227-239,240-249,250-255 5hmg d5hmga_ A:104-116,174-186,227-239,240-249,250-255 1rvt d1rvtl_ L:101-112,174-186,227-239,240-249,250-255 1ru7 d1ru7a_ A:101-112,174-186,227-239,240-249,250-255 1rv0 d1rv0l_ L:101-112,174-186,227-239,240-249,250-255 1ti8 d1ti8a1 A:104-114,174-186,227-239,240-248,250-255 1rvt d1rvtj_ J:101-112,174-186,227-239,240-249,250-255 1ru7 d1ru7g_ G:101-112,174-186,227-239,240-249,250-255 1rvz d1rvzk_ K:101-112,174-186,227-239,240-249,250-255 1rvz d1rvzc_ C:101-112,174-186,227-239,240-248,250-255 1ru7 d1ru7i_ I:101-112,174-186,227-239,240-249,250-255 1rvx d1rvxk_ K:101-112,174-186,227-239,240-249,250-255 1ru7 d1ru7e_ E:101-112,174-186,227-239,240-249,250-255 1hge d1hgec_ C:104-116,174-186,227-239,240-249,250-255 1rvz d1rvza_ A:101-112,174-186,227-239,240-249,250-255 1rv0 d1rv0j_ J:101-112,174-186,227-239,241-249,250-255 1rvz d1rvze_ E:101-112,174-186,227-239,240-248,250-255 1hge d1hgee_ E:104-116,174-186,227-239,240-249,250-255 1hge d1hgea_ A:104-116,174-186,227-239,240-249,250-255 1hgj d1hgja_ A:104-116,174-186,227-239,240-249,250-255 2ibx d2ibxe1 E:101-112,174-186,227-239,240-248,250-255 1hgj d1hgjc_ C:104-116,174-186,227-239,240-249,250-255 1hgg d1hggc_ C:104-116,174-186,227-239,240-249,250-255 1hgi d1hgia_ A:104-116,174-186,227-239,240-249,250-255 1hgi d1hgie_ E:104-116,174-186,227-239,240-249,250-255 1hgj d1hgje_ E:104-116,174-186,227-239,240-249,250-255 1hgi d1hgic_ C:104-116,174-186,227-239,240-249,250-255 1hgh d1hghc_ C:104-116,174-186,227-239,240-249,250-255 1rvx d1rvxi_ I:101-112,174-186,227-239,240-248,250-255 1rvx d1rvxe_ E:101-112,174-186,227-239,240-249,250-255 1hgh d1hghe_ E:104-116,174-186,227-239,240-249,250-255 1hgg d1hgga_ A:104-116,174-186,227-239,240-249,250-255 1hgg d1hgge_ E:104-116,174-186,227-239,240-249,250-255 2viu d2viua_ A:104-116,174-186,227-239,240-249,250-255 1eo8 d1eo8a_ A:104-116,174-186,227-239,240-249,250-255 1hgd d1hgda_ A:104-116,174-186,227-239,240-249,250-255 1ru7 d1ru7k_ K:101-112,174-186,227-239,240-249,250-255 1hgh d1hgha_ A:104-116,174-186,227-239,240-249,250-255 1hgd d1hgde_ E:104-116,174-186,227-239,240-249,250-255 1hgd d1hgdc_ C:104-116,174-186,227-239,240-249,250-255 1ru7 d1ru7c_ C:101-112,174-186,227-239,240-249,250-255 1rvx d1rvxc_ C:101-112,174-186,227-239,240-249,250-255 1rd8 d1rd8a_ A:104-113,174-186,227-239,241-248,250-255 1jsh d1jsha_ A:97-108,164-176,217-229,231-239,240-245 1hgf d1hgfe_ E:104-116,174-186,227-239,240-249,250-255 1hgf d1hgfa_ A:104-116,174-186,227-239,240-249,250-255 1hgf d1hgfc_ C:104-116,174-186,227-239,240-249,250-255 2fk0 d2fk0o1 O:104-114,174-186,227-239,241-249,250-255 1rv0 d1rv0h_ H:101-112,174-186,227-239,240-249,250-255 1ruy d1ruyj_ J:101-112,174-186,227-239,240-249,250-255 1ken d1kenc_ C:104-116,174-186,227-239,241-249,250-255 1jsi d1jsia_ A:97-108,164-176,217-229,231-239,240-245 1rvz d1rvzg_ G:101-112,174-186,227-239,240-248,250-255 1ruy d1ruyh_ H:101-112,174-186,227-239,240-249,250-255 1ruy d1ruyl_ L:101-112,174-186,227-239,240-249,250-255 1rvt d1rvth_ H:101-112,174-186,227-239,240-249,250-255 1rd8 d1rd8e_ E:104-113,174-186,227-239,241-248,250-255 1ken d1kene_ E:104-116,174-186,227-239,241-249,250-255 1rd8 d1rd8c_ C:104-113,174-186,227-239,241-248,250-255 2fk0 d2fk0g1 G:104-114,174-186,227-239,241-249,250-255 2fk0 d2fk0a1 A:104-114,174-186,227-239,241-249,250-255 1jsd d1jsda_ A:97-108,164-176,217-229,230-239,240-245 2fk0 d2fk0c1 C:104-114,174-186,227-239,241-249,250-255 2fk0 d2fk0e1 E:104-114,174-186,227-239,241-249,250-255 2fk0 d2fk0k1 K:104-114,174-186,227-239,241-249,250-255 2ibx d2ibxc1 C:101-112,174-186,227-239,241-248,250-255 2fk0 d2fk0i1 I:104-114,174-186,227-239,241-249,250-255 1mql d1mqlg_ G:104-116,174-186,227-239,240-249,250-254 2vir d2virc_ C:104-116,174-186,227-239,240-249,255-259 2vit d2vitc_ C:104-116,174-186,227-239,240-249,256-260 1ken d1kena_ A:104-116,174-186,228-239,241-249,255-260 1ha0 d1ha0a1 A:104-116,174-186,227-239,240-248,256-260 1mql d1mqld_ D:104-116,174-186,227-239,240-249,255-260 1mqm d1mqmg_ G:104-116,174-186,227-239,240-249,255-260 1mqn d1mqng_ G:104-116,174-186,227-239,240-249,255-260 1jso d1jsoa_ A:97-109,170-182,224-235,237-244,246-251 2fk0 d2fk0q1 Q:104-116,174-186,227-239,241-249,250-255 1mqn d1mqnd_ D:104-116,174-186,227-239,241-249,255-260 1mqm d1mqmd_ D:104-116,174-186,227-239,241-249,255-260 1mql d1mqla_ A:104-116,174-186,227-239,240-249,255-260 1mqm d1mqma_ A:104-116,174-186,227-239,240-249,255-260 1mqn d1mqna_ A:104-116,174-186,227-239,240-249,255-260 4hmg d4hmgc_ C:104-116,174-186,227-239,240-249,255-260 4hmg d4hmga_ A:104-116,174-186,227-239,240-249,255-260 4hmg d4hmge_ E:104-116,174-186,227-239,240-249,255-260 2hmg d2hmga_ A:104-116,174-186,227-239,240-249,255-260 2hmg d2hmge_ E:104-116,174-186,227-239,240-249,255-260 2hmg d2hmgc_ C:104-116,174-186,227-239,240-249,255-260 5hmg d5hmgc_ C:104-116,174-186,227-239,240-249,255-260 5hmg d5hmge_ E:104-116,174-186,227-239,240-249,255-260 5hmg d5hmga_ A:104-116,174-186,227-239,240-249,255-260 3hmg d3hmge_ E:104-116,174-186,227-239,240-249,255-260 3hmg d3hmgc_ C:104-116,174-186,227-239,240-249,255-260 3hmg d3hmga_ A:104-116,174-186,227-239,240-249,255-260 2viu d2viua_ A:104-116,174-186,227-239,240-249,255-260 1qfu d1qfua_ A:104-116,174-186,227-239,240-249,255-260 1ken d1kenc_ C:104-116,174-186,227-239,241-249,255-260 2ibx d2ibxa1 A:101-113,174-186,227-239,240-248,250-255 1mql d1mqlg_ G:104-116,174-186,227-239,240-249,255-260 1jsn d1jsna_ A:97-109,170-182,223-235,236-245,246-251 1eo8 d1eo8a_ A:104-116,174-186,227-239,240-249,255-260 1ken d1kene_ E:104-116,174-186,227-239,241-249,256-260 1hgj d1hgja_ A:104-116,174-186,227-239,240-249,256-260 1hge d1hgec_ C:104-116,174-186,227-239,240-249,255-260 1hgj d1hgjc_ C:104-116,174-186,227-239,240-249,256-260 1hge d1hgee_ E:104-116,174-186,227-239,240-249,255-260 1hge d1hgea_ A:104-116,174-186,227-239,240-249,255-260 1hgf d1hgfe_ E:104-116,174-186,227-239,240-249,255-260 1hgf d1hgfc_ C:104-116,174-186,227-239,240-249,255-260 1hgf d1hgfa_ A:104-116,174-186,227-239,240-249,255-260 1hgi d1hgia_ A:104-116,174-186,227-239,240-249,255-260 1hgj d1hgje_ E:104-116,174-186,227-239,240-249,255-260 1hgi d1hgie_ E:104-116,174-186,227-239,240-249,255-260 1hgi d1hgic_ C:104-116,174-186,227-239,240-249,255-260 1hgh d1hghe_ E:104-116,174-186,227-239,240-249,255-260 1hgh d1hghc_ C:104-116,174-186,227-239,240-249,255-260 1hgd d1hgdc_ C:104-116,174-186,227-239,240-249,256-260 1hgh d1hgha_ A:104-116,174-186,227-239,240-249,255-260 1hgd d1hgda_ A:104-116,174-186,227-239,240-249,255-260 1hgd d1hgde_ E:104-116,174-186,227-239,240-249,255-260 1hgg d1hggc_ C:104-116,174-186,227-239,240-249,256-260 1jsm d1jsma_ A:97-109,170-182,223-235,237-244,246-251 1hgg d1hgga_ A:104-116,174-186,227-239,240-249,256-260 1hgg d1hgge_ E:104-116,174-186,227-239,240-249,255-260 2fk0 d2fk0m1 M:104-114,174-186,227-239,240-249,250-255 2fk0 d2fk0q1 Q:104-116,174-186,227-239,241-249,255-262 2fk0 d2fk0o1 O:104-114,174-186,227-239,241-249,255-262 2fk0 d2fk0a1 A:104-114,174-186,227-239,241-249,255-262 2fk0 d2fk0g1 G:104-114,174-186,227-239,241-249,255-262 2fk0 d2fk0e1 E:104-114,174-186,227-239,241-249,255-262 2fk0 d2fk0c1 C:104-114,174-186,227-239,241-249,255-262 2fk0 d2fk0i1 I:104-114,174-186,227-239,241-249,255-262 2fk0 d2fk0k1 K:104-114,174-186,227-239,241-249,255-262 1rvt d1rvtl_ L:101-112,174-186,227-239,240-249,255-262 1rv0 d1rv0l_ L:101-112,174-186,227-239,240-249,255-262 1rv0 d1rv0j_ J:101-112,174-186,227-239,241-249,255-262 1ru7 d1ru7i_ I:101-112,174-186,227-239,240-249,255-262 1rvx d1rvxi_ I:101-112,174-186,227-239,240-248,255-262 2fk0 d2fk0m1 M:104-114,174-186,227-239,240-249,255-262 1rv0 d1rv0h_ H:101-112,174-186,227-239,240-249,255-262 1flc d1flce1 E:130-150,216-227,271-281,282-291,299-304 1rvx d1rvxe_ E:101-112,174-186,227-239,240-249,255-262 1ru7 d1ru7e_ E:101-112,174-186,227-239,240-249,255-262 1flc d1flca1 A:130-150,216-227,271-281,282-291,299-304 1jso d1jsoa_ A:97-109,170-182,224-235,237-244,251-258 1flc d1flcc1 C:130-150,216-227,271-281,282-291,299-304 1rvz d1rvze_ E:101-112,174-186,227-239,240-248,255-262 1rvt d1rvth_ H:101-112,174-186,227-239,240-249,255-262 2ibx d2ibxe1 E:60-67,174-186,227-239,240-248,250-255 2ibx d2ibxa1 A:60-67,174-186,227-239,240-248,250-255 1jsn d1jsna_ A:97-109,170-182,223-235,236-245,251-258 1rd8 d1rd8a_ A:104-113,174-186,227-239,241-248,255-263 2ibx d2ibxc1 C:60-67,174-186,227-239,241-248,250-255 1rd8 d1rd8e_ E:104-113,174-186,227-239,241-248,255-263 1rd8 d1rd8c_ C:104-113,174-186,227-239,241-248,255-263 1jsm d1jsma_ A:97-109,170-182,223-235,237-244,251-258 2fk0 d2fk0o1 O:65-72,174-186,227-239,241-249,250-255 2fk0 d2fk0q1 Q:65-72,174-186,227-239,241-249,250-255 1rvt d1rvtj_ J:101-112,174-186,227-239,240-249,255-263 1rvx d1rvxa_ A:101-112,174-186,227-239,240-248,255-263 1ti8 d1ti8a1 A:104-114,174-186,227-239,240-248,255-264 1rvx d1rvxg_ G:101-112,174-186,227-239,240-249,255-263 1rvz d1rvzk_ K:101-112,174-186,227-239,240-249,255-263 1rvz d1rvzc_ C:101-112,174-186,227-239,240-248,255-263 1rvz d1rvza_ A:101-112,174-186,227-239,240-249,255-263 1rvz d1rvzi_ I:101-112,174-186,227-239,240-249,255-263 1ru7 d1ru7g_ G:101-112,174-186,227-239,240-249,255-263 1ruy d1ruyl_ L:101-112,174-186,227-239,240-249,255-263 1ruy d1ruyh_ H:101-112,174-186,227-239,240-249,255-263 1jsh d1jsha_ A:97-108,164-176,217-229,231-239,245-253 1ruy d1ruyj_ J:101-112,174-186,227-239,240-249,255-263 1ru7 d1ru7c_ C:101-112,174-186,227-239,240-249,255-263 1ru7 d1ru7a_ A:101-112,174-186,227-239,240-249,255-263 1rvz d1rvzg_ G:101-112,174-186,227-239,240-248,255-263 1rvx d1rvxk_ K:101-112,174-186,227-239,240-249,255-263 1jsd d1jsda_ A:97-108,164-176,217-229,230-239,245-253 1rvx d1rvxc_ C:101-112,174-186,227-239,240-249,255-263 1jsi d1jsia_ A:97-108,164-176,217-229,231-239,245-253 2ibx d2ibxe1 E:101-112,174-186,227-239,240-248,255-264 1ru7 d1ru7k_ K:101-112,174-186,227-239,240-249,255-263 2ibx d2ibxc1 C:101-112,174-186,227-239,241-248,255-264 2fk0 d2fk0m1 M:65-72,174-186,227-239,240-249,250-255 1ruz d1ruzj_ J:101-112,174-186,227-239,241-248,250-263 1ruz d1ruzl_ L:101-112,174-186,227-239,241-248,250-263 1ruz d1ruzh_ H:101-112,174-186,227-239,241-248,250-263 2ibx d2ibxa1 A:101-113,174-186,227-239,240-248,255-264 23. d.264.1 Prim-pol domain Prim-pol domain consists of two alpha+beta domains 2atz d2atza1 A:82-98,100-107,111-118,159-163,165-173 1g71 d1g71b_ B:114-137,140-147,148-155,289-293,301-310 1g71 d1g71a_ A:114-137,140-147,148-155,289-293,301-310 1v33 d1v33a_ A:114-137,140-147,148-155,289-293,301-310 1v34 d1v34a_ A:114-137,140-147,148-155,289-293,301-310 1zt2 d1zt2a1 A:142-165,168-173,177-183,243-248,256-263 26. e.65.1 VPA0735-like VPA0735-like consists of a cluster of helices and two beta-sandwich domains of similar topology; probable duplication 2p3y d2p3ya1 A:64-82,131-138,140-147,176-180,185-193 2p3y d2p3yb1 B:64-82,130-138,140-147,176-180,185-193