1. c.97.1 Cytidine deaminase-like contains extra C-terminal strand 5, order 21345 !
Cytidine deaminase-like core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
1m9n d1m9na2 A:281-289,290-297,298-312,317-324,327-338
1g8m d1g8mb2 B:281-289,290-297,298-312,317-324,327-338
1g8m d1g8ma2 A:281-289,290-297,298-312,317-324,327-338
1thz d1thza2 A:281-289,290-297,298-312,317-324,327-338
1thz d1thzb2 B:281-289,290-297,298-312,317-324,327-338
2. c.1.13 Malate synthase G
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1p7t d1p7tb_ B:13-26,31-47,279-296,333-340,358-378
1n8i d1n8ia_ A:14-26,31-47,280-297,334-341,359-378
2gq3 d2gq3a1 A:14-26,31-47,280-297,334-341,359-378
2gq3 d2gq3b1 B:14-26,31-47,280-297,334-341,359-378
1p7t d1p7ta_ A:13-29,31-47,279-296,333-340,358-378
1n8w d1n8wb_ B:14-26,31-47,280-297,334-341,359-378
1n8w d1n8wa_ A:13-26,31-47,280-297,334-341,359-378
1d8c d1d8ca_ A:14-29,31-47,279-296,333-340,358-378
1p7t d1p7ta_ A:13-29,31-47,358-378,385-391,395-414
1p7t d1p7tb_ B:13-26,31-47,358-378,385-391,395-414
1d8c d1d8ca_ A:14-29,31-47,358-378,385-391,395-414
2gq3 d2gq3a1 A:14-26,31-47,359-378,392-398,402-421
1y8b d1y8ba_ A:13-24,31-46,279-296,333-338,359-378
1n8i d1n8ia_ A:14-26,31-47,359-378,392-398,402-421
1n8w d1n8wb_ B:14-26,31-47,359-378,392-398,402-421
2gq3 d2gq3b1 B:14-26,31-47,359-378,392-398,402-421
1n8w d1n8wa_ A:13-26,31-47,359-378,392-398,402-421
2jqx d2jqxa1 A:13-24,31-47,279-296,333-338,359-378
1y8b d1y8ba_ A:13-24,31-46,359-378,385-389,405-415
3. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1l7v d1l7vc_ C:89-99,103-115,128-145,153-159,165-183
1l7v d1l7vd_ D:89-99,103-115,128-145,153-159,165-183
1sgw d1sgwa_ A:86-99,103-115,127-142,145-151,157-176
2hyd d2hydb1 B:430-440,443-455,479-495,497-503,509-526
2hyd d2hyda1 A:430-440,443-455,479-495,497-503,509-526
2onj d2onjb1 B:430-440,443-455,479-495,497-503,509-526
2onj d2onja1 A:430-440,443-455,479-495,497-503,509-526
1xmi d1xmie_ E:501-508,513-525,549-565,567-573,579-598
1q12 d1q12b2 B:91-102,109-122,135-151,153-159,165-184
1q12 d1q12d2 D:91-102,109-122,135-151,153-159,165-184
1q1b d1q1bd2 D:97-104,105-122,136-151,153-159,165-184
1ji0 d1ji0a_ A:96-106,110-126,140-156,158-164,170-188
3b5y d3b5ya1 A:432-441,446-458,482-498,500-506,512-529
3b5y d3b5yb1 B:432-441,446-458,482-498,500-506,512-529
3b5y d3b5yc1 C:432-441,446-458,482-498,500-506,512-529
3b60 d3b60a1 A:432-443,446-458,482-498,500-506,512-529
3b60 d3b60b1 B:432-443,446-458,482-498,500-506,512-529
3b60 d3b60c1 C:432-443,446-458,482-498,500-506,512-529
3b60 d3b60d1 D:432-443,446-458,482-498,500-506,512-529
3b5y d3b5yd1 D:432-441,446-458,482-498,500-506,512-529
1mt0 d1mt0a_ A:558-565,582-591,607-623,625-631,637-653
2r6g d2r6gb2 B:91-105,106-122,135-151,153-159,165-184
3b5z d3b5zb1 B:432-441,446-458,482-498,500-506,512-529
3b5z d3b5za1 A:432-441,446-458,482-498,500-506,512-529
3b5z d3b5zc1 C:432-441,446-458,482-498,500-506,512-529
3b5z d3b5zd1 D:432-441,446-458,482-498,500-506,512-529
1xmj d1xmja_ A:501-509,513-525,549-565,567-573,579-596
1r0y d1r0yc_ C:501-508,513-525,549-565,567-573,579-596
2awo d2awob2 B:91-104,106-122,135-151,153-159,165-184
1r0w d1r0wb_ B:501-508,513-525,549-565,567-573,579-596
1r0z d1r0zc_ C:501-508,513-525,549-565,567-573,579-596
1r10 d1r10b_ B:501-508,513-525,549-565,567-573,579-596
1q3h d1q3hc_ C:501-508,513-525,549-565,567-573,579-596
1r0w d1r0wc_ C:501-508,513-525,549-565,567-573,579-596
1r0y d1r0yb_ B:501-508,513-525,549-565,567-573,579-596
2awn d2awnb2 B:91-104,106-122,135-151,153-159,165-184
1xf9 d1xf9c_ C:501-508,513-525,549-565,567-573,579-596
1r0x d1r0xc_ C:501-508,513-525,549-565,567-573,579-596
1q3h d1q3hb_ B:501-508,513-525,549-565,567-573,579-596
1xf9 d1xf9b_ B:501-508,513-525,549-565,567-573,579-596
1r10 d1r10a_ A:501-508,513-525,549-565,567-573,579-596
1r0z d1r0zb_ B:501-508,513-525,549-565,567-573,579-596
1xfa d1xfab_ B:501-508,513-525,549-565,567-573,579-596
1xfa d1xfaa_ A:501-508,513-525,549-565,567-573,579-596
1q1b d1q1bc2 C:97-104,106-122,135-151,153-159,165-184
1xf9 d1xf9a_ A:501-508,513-525,549-565,567-573,579-596
1xmi d1xmic_ C:501-508,513-525,549-565,567-573,579-596
1q1b d1q1bd2 D:91-98,105-122,136-151,153-159,165-184
1r0x d1r0xb_ B:501-508,513-525,549-565,567-573,579-596
1xmi d1xmia_ A:501-508,513-525,549-565,567-573,579-596
1q12 d1q12a2 A:91-101,106-122,135-151,153-159,165-184
1r0z d1r0za_ A:501-508,513-525,549-565,567-573,579-596
1q12 d1q12c2 C:91-101,106-122,135-151,153-159,165-184
1xmi d1xmib_ B:501-508,513-525,549-565,567-573,579-596
1r0y d1r0ya_ A:501-508,513-525,549-565,567-573,579-596
1r0y d1r0yd_ D:501-508,513-525,549-565,567-573,579-596
1r0z d1r0zd_ D:501-508,513-525,549-565,567-573,579-596
1r0x d1r0xa_ A:501-508,513-525,549-565,567-573,579-596
1r0w d1r0wd_ D:501-508,513-525,549-565,567-573,579-596
1q3h d1q3hd_ D:501-508,513-525,549-565,567-573,579-596
1r0w d1r0wa_ A:501-508,513-525,549-565,567-573,579-596
1xf9 d1xf9d_ D:501-508,513-525,549-565,567-573,579-596
1xmi d1xmid_ D:501-508,513-525,549-565,567-573,579-596
1r0x d1r0xd_ D:501-508,513-525,549-565,567-573,579-596
1q3h d1q3ha_ A:501-508,513-525,549-565,567-573,579-596
3d31 d3d31a2 A:88-101,104-116,129-145,147-153,159-178
3d31 d3d31b2 B:88-101,104-116,129-145,147-153,159-178
1l2t d1l2ta_ A:99-111,117-133,147-163,165-171,177-196
1g9x d1g9xc_ C:2098-2110,2127-2142,2155-2171,2173-2179,2185-2203
1vpl d1vpla_ A:92-106,107-123,136-152,155-160,166-184
1q1b d1q1ba2 A:91-98,106-122,135-151,153-159,165-184
1q1b d1q1bc2 C:91-98,106-122,135-151,153-159,165-184
1g6h d1g6ha_ A:98-110,127-142,155-171,173-179,185-203
3dhw d3dhwd1 D:104-112,113-129,142-158,160-166,172-191
3dhw d3dhwh1 H:98-112,113-129,142-158,160-166,172-191
1g9x d1g9xa_ A:98-110,127-142,155-171,173-179,185-203
1q1e d1q1ea2 A:91-104,106-122,135-151,153-159,166-184
1l2t d1l2tb_ B:1099-1113,1117-1133,1147-1163,1165-1171,1177-1196
1g9x d1g9xb_ B:1098-1110,1127-1142,1155-1171,1173-1179,1185-1203
3dhw d3dhwc1 C:98-112,113-129,142-158,160-166,172-191
1q1e d1q1eb2 B:91-104,106-122,135-151,153-159,166-184
1gaj d1gaja_ A:98-110,127-142,155-171,173-179,185-203
1oxv d1oxva2 A:98-111,113-129,142-158,160-166,172-191
1oxt d1oxtd2 D:98-111,113-129,142-158,160-166,172-191
1oxu d1oxuc2 C:98-111,113-129,142-158,160-166,172-191
1g29 d1g2912 1:97-110,112-128,141-157,159-165,171-190
1oxv d1oxvd2 D:98-111,113-129,142-158,160-166,172-191
1oxv d1oxvb2 B:98-111,113-129,142-158,160-166,172-191
3dhw d3dhwg1 G:104-112,113-129,142-158,160-166,172-191
1oxt d1oxtb2 B:98-111,113-129,142-158,160-166,172-191
1oxu d1oxua2 A:98-108,113-129,142-158,160-166,172-191
1oxx d1oxxk2 K:98-111,113-129,142-158,160-166,172-191
1b0u d1b0ua_ A:109-123,125-141,155-171,174-179,185-203
1vci d1vcia3 A:100-109,115-131,147-160,162-168,174-193
1v43 d1v43a3 A:100-109,115-131,147-160,162-168,174-193
1oxu d1oxub2 B:98-111,113-129,142-158,160-166,172-191
1oxs d1oxsc2 C:98-111,113-129,142-158,160-166,172-191
1f3o d1f3oa_ A:99-113,117-133,147-163,165-171,177-196
2awo d2awoa2 A:91-98,106-122,135-151,153-159,165-184
1oxt d1oxta2 A:98-111,113-129,142-158,160-166,172-191
2awn d2awnc2 C:91-99,106-122,135-151,153-159,165-184
2onk d2onkf1 F:86-96,99-115,128-144,146-152,158-177
2onk d2onka1 A:86-93,99-115,128-144,146-152,158-177
2onk d2onkb1 B:86-93,99-115,128-144,146-152,158-177
2onk d2onkg1 G:86-93,99-115,128-144,146-152,158-177
2awo d2awoc2 C:91-98,106-122,135-151,153-159,165-184
1sr6 d1sr6a2 A:471-504,511-525,644-664,663-672,694-707
4. c.81.1 Formate dehydrogenase/DMSO reductase, domains 1-3 molybdopterine enzyme !
Formate dehydrogenase/DMSO reductase, domains 1-3 contains of two similar intertwined domains related by pseudo dyad; duplication ! core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451
1g8k d1g8ka2 A:302-321,334-343,356-369,378-384,392-408
1g8k d1g8kg2 G:302-321,334-343,356-369,378-384,392-408
1g8k d1g8ke2 E:302-321,334-343,356-369,378-384,392-408
1g8k d1g8kc2 C:302-321,334-343,356-369,378-384,392-408
1g8j d1g8jc2 C:302-321,334-343,356-369,378-384,392-408
1g8j d1g8ja2 A:302-321,334-343,356-369,378-384,392-408
1ogy d1ogya2 A:233-252,299-311,322-336,339-345,353-369
1ogy d1ogyo2 O:233-252,299-311,322-336,339-345,353-369
1ogy d1ogyg2 G:233-252,299-311,322-336,339-345,353-369
1ogy d1ogyc2 C:233-252,299-311,322-336,339-345,353-369
1ogy d1ogym2 M:233-252,299-311,322-336,339-345,353-369
1ogy d1ogyi2 I:233-252,299-311,322-336,339-345,353-369
1ogy d1ogyk2 K:233-252,299-311,322-336,339-345,353-369
1ogy d1ogye2 E:233-252,299-311,322-336,339-345,353-369
2nap d2napa2 A:221-240,262-274,285-299,301-307,315-331
2jip d2jipa2 A:221-240,262-274,285-299,301-307,315-331
2jir d2jira2 A:221-240,262-274,285-299,301-307,315-331
2jiq d2jiqa2 A:221-240,262-274,285-299,301-307,315-331
2v3v d2v3va2 A:221-240,262-274,285-299,301-307,315-331
2jio d2jioa2 A:221-240,262-274,285-299,301-307,315-331
2v45 d2v45a2 A:221-240,262-274,285-299,301-307,315-331
1ti4 d1ti4i2 I:267-286,299-309,328-343,343-349,362-378
2jim d2jima2 A:221-240,262-274,285-300,301-307,315-331
1aa6 d1aa6a2 A:222-238,251-263,274-288,290-296,302-320
1ti2 d1ti2i2 I:267-286,299-309,328-343,343-349,362-378
1vle d1vleq2 Q:267-286,299-309,328-343,343-349,362-378
1ti4 d1ti4a2 A:267-286,299-309,328-343,343-349,362-378
1ti6 d1ti6c2 C:267-286,299-309,328-343,343-349,362-378
1vle d1vlem2 M:267-286,299-309,328-343,343-349,362-378
1ti4 d1ti4g2 G:267-286,299-309,328-343,343-349,362-378
1vle d1vles2 S:267-286,299-309,328-343,343-349,362-378
1ti2 d1ti2k2 K:267-286,299-309,328-343,343-349,362-378
1vld d1vldu2 U:267-286,299-309,328-343,343-349,360-378
1vle d1vlew2 W:267-286,299-309,328-343,343-349,362-378
1ti4 d1ti4e2 E:267-286,299-309,328-343,343-349,360-378
1ti4 d1ti4c2 C:267-286,299-309,328-343,343-349,360-378
1ti6 d1ti6a2 A:267-286,299-309,328-343,343-349,362-378
1vle d1vleo2 O:267-286,299-309,328-343,343-349,362-378
1ti2 d1ti2a2 A:267-286,299-309,328-343,343-349,360-378
1ti2 d1ti2c2 C:267-286,299-309,328-343,343-349,360-378
1ti6 d1ti6i2 I:267-286,299-309,328-343,343-349,360-378
1ti6 d1ti6g2 G:267-286,299-309,328-343,343-349,362-378
1vld d1vlds2 S:267-286,299-309,328-343,343-349,360-378
1r27 d1r27c2 C:301-322,472-482,514-533,535-541,549-565
1vlf d1vlfw2 W:267-286,299-309,328-343,343-349,360-378
1ti6 d1ti6k2 K:267-286,299-309,328-343,343-349,360-378
1vlf d1vlfs2 S:267-286,299-309,328-343,343-349,360-378
1ti6 d1ti6e2 E:267-286,299-309,328-343,343-349,360-378
1ti4 d1ti4k2 K:267-286,299-309,328-343,343-349,360-378
1vlf d1vlfm2 M:267-286,299-309,328-343,343-349,360-378
1vlf d1vlfq2 Q:267-286,299-309,328-343,343-349,360-378
1vlf d1vlfo2 O:267-286,299-309,328-343,343-349,360-378
1ti2 d1ti2g2 G:267-286,299-309,328-343,343-349,360-378
1vld d1vldq2 Q:267-286,299-309,328-343,343-349,360-378
1r27 d1r27a2 A:298-322,472-482,514-533,535-541,549-565
1vlf d1vlfu2 U:267-286,299-309,328-343,343-349,360-378
1vld d1vldw2 W:267-286,299-309,328-343,343-349,360-378
1fdi d1fdia2 A:222-238,251-263,274-288,290-296,302-320
1vld d1vldm2 M:267-286,299-309,328-343,343-349,360-378
1vle d1vleu2 U:267-286,299-309,328-343,343-349,360-378
1vld d1vldo2 O:267-286,299-309,328-343,343-349,360-378
1y5l d1y5la2 A:298-322,472-482,514-533,535-541,549-565
1y5n d1y5na2 A:298-322,472-482,514-533,536-541,549-565
1q16 d1q16a2 A:298-322,472-482,514-533,535-541,549-565
1y5i d1y5ia2 A:298-322,472-482,514-533,535-541,549-565
1y4z d1y4za2 A:298-322,472-482,514-533,535-541,549-565
1fdo d1fdoa2 A:222-238,251-263,274-289,290-296,302-320
1ti2 d1ti2e2 E:267-286,299-309,328-343,343-349,360-378
1siw d1siwa2 A:298-322,472-482,514-533,535-541,549-565
1kqf d1kqfa2 A:276-295,359-372,383-400,403-409,417-433
1kqg d1kqga2 A:276-295,359-372,383-400,403-409,417-433
1eu1 d1eu1a2 A:239-258,271-281,300-315,315-321,329-345
1h5n d1h5nc2 C:239-258,271-281,300-315,315-321,329-345
1e60 d1e60c2 C:239-258,271-281,300-315,315-321,329-345
1h5n d1h5na2 A:239-258,271-281,300-315,315-321,329-345
1e5v d1e5va2 A:239-258,271-281,300-315,315-321,329-345
1e18 d1e18a2 A:239-258,271-281,300-315,315-321,329-345
1e60 d1e60a2 A:239-258,271-281,300-315,315-321,329-345
1dmr d1dmra2 A:239-258,271-281,300-315,315-321,329-345
4dmr d4dmra2 A:239-258,271-281,300-315,315-321,329-345
1dms d1dmsa2 A:239-258,271-281,300-315,315-321,329-345
1e5v d1e5vc2 C:239-258,271-281,300-315,315-321,329-345
3dmr d3dmra2 A:239-258,271-281,300-315,315-321,329-345
1e61 d1e61a2 A:239-258,271-281,300-315,315-321,329-345
2dmr d2dmra2 A:239-258,271-281,300-315,315-321,329-345
1e61 d1e61c2 C:239-258,271-281,300-315,315-321,329-345
1tmo d1tmoa2 A:245-264,277-287,306-321,321-327,335-351
1h0h d1h0hk2 K:237-256,320-333,344-361,364-370,375-394
1h0h d1h0ha2 A:237-256,320-333,344-361,364-370,375-394
5. c.1.11 Enolase C-terminal domain-like binds metal ion (magnesium or manganese) in conserved site inside barrel ! N-terminal alpha+beta domain is common to this superfamily !
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1yey d1yeya1 A:131-139,172-184,329-345,347-351,356-374
1yey d1yeyb1 B:131-139,172-184,329-345,347-351,356-374
1yey d1yeyd1 D:131-139,172-184,329-345,347-351,356-374
1yey d1yeyc1 C:131-139,172-184,329-345,347-351,356-374
6. c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
S-adenosyl-L-methionine-dependent methyltransferases core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
1vbf d1vbfa_ A:2-12,13-24,55-67,72-78,82-92
1vbf d1vbfc_ C:2-12,13-24,55-67,72-78,82-92
1vbf d1vbfb_ B:1-11,13-24,55-67,72-78,82-92
1vbf d1vbfd_ D:2-11,13-24,55-67,72-78,81-92
1dl5 d1dl5b1 B:1-13,15-26,60-72,76-83,87-98
1i1n d1i1na_ A:8-20,24-35,60-72,78-85,89-100
1dl5 d1dl5a1 A:1-13,15-26,60-72,76-83,87-98
1kr5 d1kr5a_ A:8-20,24-35,60-72,78-85,89-100
1r18 d1r18a_ A:9-21,25-36,61-73,79-86,90-104
7. c.77.1 Isocitrate/Isopropylmalate dehydrogenase-like the constituent families form similar dimers !
Isocitrate/Isopropylmalate dehydrogenase-like consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
1xco d1xcof_ F:75-90,94-105,104-116,119-126,128-141
1r5j d1r5jb_ B:79-92,96-107,106-118,121-126,130-143
1r5j d1r5ja_ A:79-92,96-107,106-118,121-126,130-143
8. c.2.1 NAD(P)-binding Rossmann-fold domains
NAD(P)-binding Rossmann-fold domains core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456 ! The nucleotide-binding modes of this and the next two folds/superfamilies are similar
1p77 d1p77a1 A:64-72,76-83,128-142,142-149,151-166
1u1i d1u1ic1 C:922-938,963-974,980-993,995-999,1007-1018
1u1i d1u1ia1 A:122-139,163-174,180-193,195-199,207-218
1vko d1vkoa1 A:207-227,252-263,268-281,282-287,294-305
1u1i d1u1ib1 B:522-538,563-574,580-593,595-599,607-618
1jkf d1jkfb1 B:215-235,260-271,276-289,290-295,302-313
1jki d1jkib1 B:215-235,260-271,276-289,291-295,302-313
1rm0 d1rm0b1 B:215-235,260-271,276-289,290-295,302-313
1p1k d1p1kb1 B:215-235,260-271,276-289,290-295,302-313
1la2 d1la2a1 A:215-235,260-271,276-289,290-295,302-313
1p1f d1p1fb1 B:215-235,260-271,276-289,290-296,302-313
1la2 d1la2c1 C:215-235,260-271,276-289,290-295,302-313
1p1j d1p1jb1 B:215-235,260-271,276-289,290-295,302-313
1p1h d1p1ha1 A:215-235,260-271,276-289,290-295,302-313
1jki d1jkia1 A:215-235,260-271,276-289,290-295,302-313
1p1f d1p1fa1 A:215-235,260-271,276-289,290-296,302-313
1p1i d1p1ib1 B:215-235,260-271,276-289,291-295,302-313
1p1k d1p1ka1 A:215-235,260-271,276-289,290-295,302-313
1la2 d1la2d1 D:215-235,260-271,276-289,290-296,302-313
1p1h d1p1hc1 C:215-235,260-271,276-289,290-295,302-313
1jkf d1jkfa1 A:215-235,260-271,276-289,290-295,302-313
1p1i d1p1ia1 A:215-235,260-271,276-289,291-295,302-313
1rm0 d1rm0a1 A:215-235,260-271,276-289,291-295,302-313
1p1h d1p1hb1 B:215-235,260-271,276-289,290-295,302-313
1p1j d1p1ja1 A:215-235,260-271,276-289,291-295,302-313
9. c.23.17 Precorrin-8X methylmutase CbiC/CobH fold elaborated with additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1ou0 d1ou0c_ C:16-26,31-45,46-53,157-163,191-206
1ou0 d1ou0a_ A:17-26,30-45,46-53,157-163,191-206
1ou0 d1ou0b_ B:15-26,30-45,46-53,157-163,191-206
1ou0 d1ou0d_ D:16-25,30-45,46-53,157-163,191-206
10. e.26.1 Prismane protein-like
Prismane protein-like 3 domains: (1) spectrin repeat-like 3-helical bundle; (2 and 3) alpha/beta: Rossmann-fold topology
2z8y d2z8yn1 N:62-70,95-121,211-231,249-256,259-273
2z8y d2z8yo1 O:62-70,95-121,211-231,249-256,259-273
1oao d1oaoc_ C:62-70,95-121,211-231,249-256,259-273
2z8y d2z8yp1 P:62-70,95-121,210-231,249-256,259-273
1mjg d1mjgp_ P:62-70,95-121,211-231,249-256,259-273
1mjg d1mjgn_ N:62-70,95-121,211-231,249-256,259-273
1mjg d1mjgm_ M:62-70,95-121,211-231,249-256,259-273
2z8y d2z8ym1 M:62-70,95-121,211-231,249-256,259-273
1ru3 d1ru3a_ A:65-73,98-124,214-234,252-259,262-276
1mjg d1mjgo_ O:62-70,95-121,211-231,249-256,259-273
1oao d1oaod_ D:62-70,95-121,211-231,249-256,259-273
11. c.117.1 Amidase signature (AS) enzymes
Amidase signature (AS) enzymes possible duplication: the topologies of N- and C-terminal halves are similar; 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213549A867 (A=10); strands from 5 to 9 are antiparallel to the rest
1mt5 d1mt5m_ M:37-67,92-112,118-128,137-142,218-228
1mt5 d1mt5m_ M:37-67,92-112,118-128,179-186,218-228
1mt5 d1mt5c_ C:37-67,92-112,118-128,179-186,218-228
1mt5 d1mt5a_ A:37-67,92-112,118-128,137-142,218-228
1mt5 d1mt5a_ A:37-67,92-112,118-128,179-186,218-228
1mt5 d1mt5c_ C:37-67,92-112,118-128,137-142,218-228
1mt5 d1mt5i_ I:37-67,92-112,118-128,179-186,218-228
1mt5 d1mt5i_ I:37-67,92-112,118-128,137-142,218-228
1mt5 d1mt5o_ O:37-67,92-112,118-128,137-142,218-228
1mt5 d1mt5j_ J:37-67,92-112,118-128,137-142,218-228
1mt5 d1mt5b_ B:37-67,92-112,118-128,137-143,218-228
1mt5 d1mt5g_ G:37-67,92-112,118-128,137-142,218-228
1mt5 d1mt5g_ G:37-67,92-112,118-128,179-186,218-228
1mt5 d1mt5j_ J:37-67,92-112,118-128,179-186,218-228
1mt5 d1mt5o_ O:37-67,92-112,118-128,179-186,218-228
1mt5 d1mt5f_ F:37-67,92-112,118-128,137-142,218-228
1mt5 d1mt5b_ B:37-67,92-112,118-128,179-186,218-228
1mt5 d1mt5f_ F:37-67,92-112,118-128,179-186,218-228
12. c.26.1 Nucleotidylyl transferase
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
1r6t d1r6tb_ B:236-244,244-259,274-290,304-310,313-328
1r6u d1r6ub_ B:236-244,244-259,274-290,304-310,313-328
1ulh d1ulha_ A:189-197,197-212,227-243,256-263,266-281
1o5t d1o5ta_ A:236-244,244-259,274-290,303-310,313-328
13. c.18.1 Uracil-DNA glycosylase-like
Uracil-DNA glycosylase-like 3 layers, a/b/a; core: parallel beta-sheet of 4 strands, order 2134
2j8x d2j8xc1 C:31-39,41-63,67-79,144-151,165-183
2j8x d2j8xc1 C:31-39,41-63,67-79,84-91,165-183
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1174 (enumeration index: query386.2071) of S5
3lj7 A:33-67,92-112,118-128,136-142,218-228
3lj7 B:33-67,92-112,118-128,178-186,218-228
3lj7 A:33-67,92-112,118-128,178-186,218-228
3lj7 B:33-67,92-112,118-128,136-143,218-228
1z47 B:103-116,118-134,147-163,165-170,177-196
1z47 A:103-116,118-134,147-163,165-171,177-196
3sqx A:103-111,114-125,130-142,146-152,157-174
3i61 A:103-111,114-125,130-142,146-152,157-174
2iu3 B:281-289,290-297,298-312,317-324,327-338
3t38 B:9-26,30-50,52-75,81-90,147-154
3t38 A:9-26,30-50,52-75,81-90,147-154
3t38 B:9-26,30-50,52-75,109-118,147-154
3t38 A:9-26,30-50,52-75,109-118,147-154
3g61 A:479-489,492-504,528-544,546-552,558-575
3g61 B:479-489,492-504,528-544,546-552,558-575
2pzf B:501-509,513-525,549-565,567-573,579-596
2pzf A:501-509,513-525,549-565,567-573,579-596
3dkp A:162-171,173-184,189-202,204-209,214-228
2cvw A:127-136,166-180,182-196,197-201,608-616
2wj1 A:34-67,92-112,118-128,178-186,218-228
2wj1 B:34-67,92-112,118-128,178-186,218-228
2wj1 A:34-67,92-112,118-128,136-142,218-228
2wj1 B:34-67,92-112,118-128,136-142,218-228
3ozx A:420-430,437-448,461-477,479-485,491-510
3ozx A:179-188,191-201,214-230,232-238,244-260
3ozx B:179-188,192-201,214-230,232-238,244-260
3ozx B:420-429,437-448,461-477,479-485,491-510
3puy A:91-104,106-122,135-151,153-159,165-184
3puy B:91-104,106-122,135-151,153-159,165-184
2nya F:224-243,289-301,312-326,329-335,343-359
2nya A:224-243,289-301,312-326,329-335,343-359
3tuz D:98-111,113-129,142-158,160-166,172-191
3tuz G:98-111,113-129,142-158,160-166,172-191
3tuz H:98-111,113-129,142-158,160-166,172-191
3tuz C:98-111,113-129,142-158,160-166,172-191
2d62 A:100-113,115-131,144-160,162-168,174-193
2q0h A:93-107,109-125,138-154,157-162,168-186
2q0h B:93-107,109-125,138-154,157-162,168-186
2ouk A:93-107,109-125,138-154,156-162,168-186
2ouk D:93-107,109-125,138-154,157-162,168-186
2ouk C:93-107,109-125,138-154,157-162,168-186
2ouk B:93-107,109-125,138-154,157-162,168-186
3ml1 A:233-252,299-311,322-336,339-345,353-369
3qj8 B:33-67,92-112,118-128,178-186,218-228
3qj8 B:33-67,92-112,118-128,136-142,218-228
3qj8 A:33-67,92-112,118-128,136-142,218-228
3qj8 A:33-67,92-112,118-128,178-186,218-228
3pux A:91-104,106-122,135-151,153-159,165-184
3pux B:91-105,106-122,135-151,153-159,165-184
3g5u B:479-489,492-504,528-544,546-552,558-575
3g5u A:479-489,492-504,528-544,546-552,558-575
3nh6 A:679-689,692-704,728-744,746-752,758-774
2bbt A:501-509,513-525,549-565,567-573,579-596
2bbt B:501-509,513-525,549-565,567-573,579-596
3gfo A:99-112,114-130,143-159,161-167,173-192
2ix8 A:1506-1515,1518-1530,1544-1560,1562-1568,1574-1589
2d2f A:96-110,114-130,145-161,163-170,175-190
2olk D:93-107,109-125,138-154,157-162,168-186
2olk A:93-107,109-125,138-154,157-162,168-186
2olk C:93-107,109-125,138-154,157-162,168-186
2olk B:93-107,109-125,138-154,157-162,168-186
3qk5 A:33-67,92-112,118-128,136-142,218-228
3qk5 B:33-67,92-112,118-128,178-186,218-228
3qk5 A:33-67,92-112,118-128,178-186,218-228
3qk5 B:33-67,92-112,118-128,136-142,218-228
3o2k A:16-26,40-52,54-70,100-108,406-422
3puv A:91-98,106-122,135-151,153-159,165-184
3puv B:91-104,106-122,135-151,153-159,165-184
3i04 M:62-70,95-121,211-231,249-256,259-273
3i04 P:62-70,95-121,211-231,249-256,259-273
3i04 O:62-70,95-121,211-231,249-256,259-273
3i04 N:62-70,95-121,211-231,249-256,259-273
3hi0 A:331-350,428-450,452-460,470-476,484-499
3hi0 B:331-350,428-450,452-460,470-475,483-499
2it1 A:91-104,106-122,135-151,153-159,165-184
2it1 B:91-104,106-122,135-151,153-159,165-184
3g60 B:479-489,492-504,528-544,546-552,558-576
3g60 A:479-489,492-504,528-544,546-552,558-576
3paw A:127-136,166-180,182-196,197-201,608-616
2ec6 A:473-506,513-524,647-666,666-674,697-710
3sqw A:103-111,114-125,130-142,146-152,157-174
2d3w A:94-111,116-132,143-163,165-172,177-193
2d3w B:94-111,116-132,143-163,165-172,177-192
2d3w C:94-111,116-132,143-163,165-172,177-193
2pbf A:11-23,27-38,63-75,82-88,92-103
2pcj A:98-111,113-129,142-158,160-166,172-190
2pcj B:98-111,113-129,142-158,160-166,172-190
3pr0 A:33-67,92-112,118-128,136-142,218-228
3pr0 B:33-67,92-112,118-128,178-186,218-228
3pr0 B:33-67,92-112,118-128,136-142,218-228
3pr0 A:33-67,92-112,118-128,178-186,218-228
2pjz A:89-102,104-116,130-146,148-154,160-175
3fh6 C:91-102,106-122,135-151,153-159,165-184
3fh6 A:91-102,106-122,135-151,153-159,165-184
3fh6 D:92-105,106-122,135-151,153-159,165-184
3fh6 B:92-105,106-122,135-151,153-159,165-184
3i62 A:103-111,114-125,130-142,146-152,157-174
3c41 K:93-107,109-125,138-154,157-162,168-186
3c41 J:93-107,109-125,138-154,157-162,168-186
3rlf A:91-104,106-122,135-151,153-159,165-184
3rlf B:91-104,106-122,135-151,153-159,165-184
3cf4 A:147-155,189-220,586-606,625-631,635-649
3rxy E:67-89,91-100,132-156,194-198,205-217
3rxy C:73-89,91-100,133-156,194-198,206-217
3rxy A:73-89,91-100,133-156,194-198,206-217
3rxy F:67-89,91-100,133-156,194-198,205-217
3rxy B:70-89,91-100,133-156,194-198,206-217
2yyz A:91-101,106-122,135-151,153-159,165-184
2b1g D:281-289,290-297,298-312,318-324,327-338
2b1g A:281-289,290-297,298-312,317-324,327-338
3k83 A:34-67,92-112,118-128,136-142,218-228
3k83 B:33-67,92-112,118-128,178-186,218-228
3k83 B:33-67,92-112,118-128,136-142,218-228
3k83 A:34-67,92-112,118-128,178-186,218-228
3nhb A:679-689,692-704,728-744,746-752,758-775
3egw A:298-322,472-482,514-533,535-541,549-565
2ivf A:302-318,400-413,424-438,439-445,453-469
3tui D:98-111,113-129,142-158,160-166,172-191
3tui H:98-111,113-129,142-158,160-166,172-191
3tui C:98-111,113-129,142-158,160-166,172-191
3tui G:98-111,113-129,142-158,161-166,172-191
2hne C:131-139,172-184,329-345,347-351,356-374
3k84 A:33-67,92-112,118-128,136-142,218-228
3k84 B:32-67,92-112,118-128,178-186,218-228
3k84 A:33-67,92-112,118-128,178-186,218-228
3k84 B:32-67,92-112,118-128,136-142,218-228
2xax C:168-184,185-203,208-218,462-469,474-496
3ir6 A:298-322,472-482,514-533,536-541,549-565
3b5w E:433-442,446-458,482-498,500-505,512-530
3b5w A:432-443,446-458,482-498,500-508,512-528
3b5w B:432-443,446-458,482-498,500-508,512-528
3b5w F:433-442,446-458,482-498,500-505,512-530
3b5w H:433-442,446-458,482-498,500-505,512-530
3b5w C:432-443,446-458,482-498,500-508,512-528
3b5w D:432-443,446-458,482-498,500-508,512-528
3b5w G:433-442,446-458,482-498,500-505,512-530
2pze B:501-508,513-525,549-565,567-572,579-596
2pze A:501-508,513-525,549-565,567-573,579-596
3ppm A:33-67,92-112,118-128,136-143,218-228
3ppm B:33-67,92-112,118-128,178-186,218-228
3ppm A:33-67,92-112,118-128,178-186,218-228
3ppm B:33-67,92-112,118-128,136-143,218-228
3qj9 A:33-67,92-112,118-128,136-142,218-228
3qj9 B:34-67,92-112,118-128,178-186,218-228
3qj9 B:34-67,92-112,118-128,136-142,218-228
3qj9 A:33-67,92-112,118-128,178-186,218-228
3bk7 A:181-191,194-203,216-232,234-240,246-264
3nh9 A:679-689,692-704,728-744,746-752,758-774
3lj6 A:34-67,92-112,118-128,178-186,218-228
3lj6 B:33-67,92-112,118-128,178-186,218-228
3lj6 A:34-67,92-112,118-128,136-143,218-228
3lj6 B:33-67,92-112,118-128,136-143,218-228
2olj A:93-107,109-125,138-154,157-162,168-186
2olj B:93-107,109-125,138-154,157-162,168-186
3ir5 A:298-322,472-482,514-533,535-541,549-565
1yqt A:177-187,190-199,212-227,230-236,242-260
2p56 A:119-128,127-142,146-159,161-167,203-219
2yl4 A:583-593,610-620,635-651,653-659,665-681
3tuj D:98-111,113-129,142-158,160-166,172-191
3tuj C:98-111,113-129,142-158,160-166,172-191
2p2v A:119-128,127-142,146-159,161-167,203-219
3qkv B:35-67,92-112,118-128,136-142,218-228
3qkv B:35-67,92-112,118-128,178-186,218-228
3ir7 A:298-322,472-482,514-533,535-541,549-565
3oj8 A:33-67,92-112,118-128,136-143,218-228
3oj8 B:33-67,92-112,118-128,178-186,218-228
3oj8 A:33-67,92-112,118-128,178-186,218-228
3oj8 B:33-67,92-112,118-128,136-143,218-228
2yz2 A:95-109,112-125,140-156,158-164,170-188
3iuy B:231-240,239-250,255-268,270-275,280-295
2bbo A:501-508,513-525,549-565,567-573,580-596
2pzg B:501-508,513-525,549-565,567-573,579-596
2pzg A:501-508,513-525,549-565,567-573,579-596
3i01 O:62-69,95-121,211-231,249-256,259-273
3i01 M:62-70,95-121,211-231,249-256,259-273
3i01 P:62-70,95-121,211-231,249-256,259-273
3i01 N:62-70,95-121,211-231,249-256,259-273
4a35 A:137-145,178-190,337-353,355-359,364-382
2iu0 A:281-289,290-297,298-312,317-324,327-338
2ihy B:96-110,116-131,144-158,162-168,174-193
2ihy A:96-105,116-131,144-160,162-168,174-193
3k7f A:32-67,92-112,118-128,178-186,218-228
3k7f B:33-67,92-112,118-128,178-186,218-228
3k7f A:32-67,92-112,118-128,136-142,218-228
3k7f B:33-67,92-112,118-128,136-142,218-228
2b1i B:281-289,290-297,298-312,317-324,327-338
2b1i A:281-289,290-297,298-312,318-324,327-338
3b5x B:432-443,447-458,482-498,500-507,512-527
3b5x A:432-439,447-458,482-498,500-507,512-527
2cbz A:721-728,733-745,769-785,787-793,799-812
3ly5 A:173-186,187-198,203-216,218-223,228-245
3ly5 A:173-186,187-198,228-245,253-258,260-278
2zu0 C:94-111,116-132,147-163,165-171,177-193
2nq2 C:82-92,102-117,130-146,148-154,160-179
2nq2 D:82-92,102-117,130-146,148-154,160-179
3o5a A:233-252,299-311,322-336,339-345,353-369
2pcl A:98-111,113-129,142-158,160-166,172-190
3puw A:91-104,106-122,135-151,153-159,165-184
3puw B:91-104,106-122,135-151,153-159,165-184
2wj2 A:33-67,92-112,118-128,178-186,218-228
2wj2 B:33-67,92-112,118-128,136-143,218-228
2wj2 A:33-67,92-112,118-128,136-142,218-228
2wj2 B:33-67,92-112,118-128,178-186,218-228
3o24 A:16-26,40-52,54-73,100-108,406-422
3i5x A:103-111,114-125,130-142,146-152,157-174
3nha A:679-689,692-704,728-744,746-752,758-775
3i5y A:103-111,114-125,130-142,146-152,157-174
3c4j A:93-107,109-125,138-154,157-162,168-186
3c4j B:93-107,109-125,138-154,157-162,168-186
3n0r A:7-23,94-107,222-229,236-240,243-259
3fvq B:96-106,112-127,140-156,158-164,170-189
3fvq A:96-106,112-127,140-156,158-164,170-189
2ghi C:108-118,123-133,159-173,175-181,187-205
2ghi B:108-118,132-141,157-173,175-181,187-203
2ghi B:108-118,121-133,157-173,175-181,187-203
2ghi A:108-118,121-133,157-173,175-181,187-203
2ghi A:108-118,132-141,157-173,175-181,187-203
2vya A:34-67,92-112,118-128,136-142,218-228
2vya B:34-67,92-112,118-128,178-186,218-228
2vya B:34-67,92-112,118-128,136-143,218-228
2vya A:34-67,92-112,118-128,178-186,218-228
3lbf C:3-17,20-31,60-72,78-83,87-97
3lbf D:3-17,20-31,60-72,78-83,87-98
3lbf A:3-17,20-31,60-72,78-83,87-97
2wqd A:37-69,68-84,166-173,177-185,190-200
2bbs A:501-509,513-525,549-565,567-573,579-596
2bbs B:501-509,513-525,549-565,567-573,579-596
2qi9 C:89-99,103-115,128-145,153-159,165-183
2qi9 D:89-99,103-115,128-145,153-159,165-183