1. d.341.1 Peptidoglycan deacetylase N-terminal noncatalytic region
Peptidoglycan deacetylase N-terminal noncatalytic region consists of two different domains, d1: [alpha-beta(2)-alpha-beta(3); 3 layers: a/b/a; mixed beta-sheet, order 12345, strands 2 and 3 are parallel to each other with a left-handed crossover connection], d2: alpha-beta(3)-alpha; 2 layers; antiparallel beta-sheet, order 123]
2c1g d2c1ga2 A:46-62,64-73,74-85,89-105,108-120
2c1i d2c1ia2 A:46-62,64-73,74-85,89-104,106-120
2. c.109.1 PEP carboxykinase N-terminal domain
PEP carboxykinase N-terminal domain contains mixed beta-sheets; topology is partly similar to that of the catalytic C-terminal domain
1nhx d1nhxa2 A:24-39,134-147,154-162,163-175,189-196
2gmv d2gmva2 A:24-39,137-147,154-162,163-175,189-196
1khf d1khfa2 A:24-39,134-147,154-162,163-175,189-196
1m51 d1m51a2 A:24-39,134-147,154-162,163-175,189-196
2gmv d2gmvb2 B:24-39,137-147,154-162,163-175,189-196
1khb d1khba2 A:24-39,137-147,154-162,163-175,189-196
1khe d1khea2 A:24-39,137-147,154-162,163-175,189-196
1khg d1khga2 A:24-39,137-147,154-162,163-175,189-196
1k3d d1k3da2 A:98-114,114-126,132-140,141-153,166-173
1aq2 d1aq2a2 A:98-114,114-126,132-140,141-153,166-173
1ayl d1ayla2 A:98-114,114-126,132-140,141-153,166-173
1oen d1oena2 A:98-114,114-126,132-140,141-153,166-173
1os1 d1os1a2 A:98-114,116-126,132-140,141-153,166-173
1k3c d1k3ca2 A:98-115,114-126,132-140,141-153,166-173
2pxz d2pxzx2 X:98-116,117-126,132-140,141-153,166-173
2py7 d2py7x2 X:98-116,117-126,132-140,141-153,166-173
2olr d2olra2 A:98-115,114-126,132-140,141-153,166-173
2pc9 d2pc9a2 A:79-98,97-107,113-121,122-134,151-158
2olq d2olqa2 A:98-115,114-126,132-140,141-153,166-173
3. d.260.1 Suppressor of Fused, N-terminal domain
Suppressor of Fused, N-terminal domain unusual fold; bifurcated beta-sheet; left-handed beta-alpha-beta unit
1m1l d1m1lb_ B:31-46,84-94,117-126,134-152,192-204
1m1l d1m1la_ A:31-46,82-94,117-126,134-152,192-204
1m1l d1m1lc_ C:31-46,82-94,117-126,134-151,192-204
1m1l d1m1ld_ D:31-46,82-94,117-126,134-151,192-204
4. d.14.1 Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
1y5y d1y5ye_ E:4032-4045,4050-4054,4064-4071,4076-4102,4111-4119
1y5y d1y5yc_ C:2032-2045,2050-2054,2064-2071,2076-2102,2111-2119
1y5y d1y5ya_ A:32-45,50-54,64-71,76-102,111-119
1y5y d1y5yb_ B:1032-1045,1050-1054,1064-1071,1076-1102,1111-1119
1y5y d1y5yd_ D:3032-3045,3050-3054,3064-3071,3076-3102,3111-3120
5. b.40.4 Nucleic acid-binding proteins
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1lyl d1lyla1 A:44-55,81-90,91-100,104-112,133-140
1lyl d1lylc1 C:44-55,81-90,91-100,104-112,133-140
1bbw d1bbwa1 A:44-55,81-90,91-100,104-112,133-140
6. b.43.2 FucI/AraA C-terminal domain-like
Reductase/isomerase/elongation factor common domain barrel, closed; n=6, S=10; greek-key
2ajt d2ajtb1 B:308-323,389-400,401-413,434-446,471-477
2ajt d2ajta1 A:308-323,389-400,401-413,434-446,471-477
2ajt d2ajtc1 C:308-323,389-400,401-413,434-446,471-477
2hxg d2hxga1 A:308-323,388-400,401-413,434-446,471-477
2hxg d2hxgb1 B:308-323,389-400,401-413,434-446,472-477
2hxg d2hxgc1 C:308-323,388-400,401-413,434-446,472-477
1fui d1fuib1 B:311-322,431-436,445-452,484-496,499-507
1fui d1fuia1 A:311-322,431-436,445-452,484-496,499-507
1fui d1fuif1 F:311-322,431-436,445-452,484-496,499-507
1fui d1fuid1 D:311-322,431-436,445-452,484-496,499-507
1fui d1fuic1 C:311-322,431-436,445-452,484-496,499-507
1fui d1fuie1 E:311-322,431-436,445-452,484-496,499-507
7. i.7.1 Reovirus components
Reovirus components
1ej6 d1ej6d_ D:144-157,158-167,267-275,282-299,327-331
1ej6 d1ej6e_ E:143-157,158-167,267-275,282-299,327-331
8. d.147.1 Methenyltetrahydromethanopterin cyclohydrolase
Methenyltetrahydromethanopterin cyclohydrolase consists of two alpha+beta subdomains
1qlm d1qlma_ A:3-19,24-30,32-38,146-158,163-170
9. c.45.1 (Phosphotyrosine protein) phosphatases II share with the family I the common active site structure with a circularly permuted topology !
(Phosphotyrosine protein) phosphatases II core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 1423
1lw3 d1lw3a2 A:251-263,268-275,278-286,387-410,411-418
1zvr d1zvra2 A:251-263,266-276,277-286,387-410,411-418
1zsq d1zsqa2 A:251-263,266-276,277-286,387-410,411-418
1m7r d1m7ra2 A:251-263,268-276,277-286,387-410,411-418
1m7r d1m7rb2 B:251-263,268-276,277-286,387-410,411-418
10. e.25.1 Sec1/munc18-like (SM) proteins
Sec1/munc18-like (SM) proteins 3 domains: (1 and 2) alpha+beta; (3) mostly alpha, inserted in domain 2
1mqs d1mqsa_ A:13-28,163-167,169-174,615-629,634-641
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 997 (enumeration index: query388.404.419) of S5
3e9i D:36-47,73-82,83-92,96-106,124-131
3e9i B:36-47,73-82,83-92,96-106,124-131
2du5 B:358-367,432-438,439-445,450-458,517-521
2du5 A:358-367,432-438,439-445,447-458,517-521
2qew A:24-39,137-147,154-162,163-175,189-196
2ikf A:28-45,47-52,66-73,73-80,132-140
2rk7 B:24-39,134-147,154-162,163-175,189-196
2rk7 A:24-39,137-147,154-162,163-175,189-196
1ytm B:1091-1107,1107-1119,1125-1133,1134-1146,1159-1166
1ytm B:1002-1011,1107-1119,1125-1133,1134-1146,1159-1166
1ytm A:91-107,107-119,125-133,134-146,159-166
1ytm A:2-11,107-119,125-133,134-146,159-166
3k1q D:135-152,153-163,261-270,277-295,325-329
3bju A:104-115,141-150,151-160,165-176,195-201
3bju D:104-115,141-150,151-160,165-176,194-201
3bju B:104-115,141-150,151-160,165-176,194-201
2qey A:24-39,137-147,154-162,163-175,189-196
2du4 A:358-367,432-438,439-445,450-458,517-521
2du4 B:358-367,432-438,439-445,450-458,517-521
3dt4 C:24-39,137-147,154-162,163-175,189-196
3dt4 A:24-39,137-147,154-162,163-175,189-196
3mof B:24-39,137-147,154-162,163-175,189-196
3mof A:24-39,137-147,154-162,163-175,189-196
2du3 A:358-367,432-438,439-445,450-458,517-521
2du3 B:358-367,432-438,439-445,450-458,517-521
2rk8 B:24-39,134-147,154-162,163-175,189-196
2rk8 A:24-39,137-147,154-162,163-175,189-196
3puj A:5-23,137-141,143-148,546-561,562-570
3moe A:24-39,137-147,154-162,163-175,189-196
3c98 A:5-23,137-141,143-148,546-561,562-570
3rzu B:260-272,280-291,292-303,315-327,418-424
3rzu E:260-272,280-291,292-303,315-327,418-424
3rzu G:260-272,280-291,292-303,315-327,418-424
3rzu D:260-272,280-291,292-303,315-327,418-424
3rzu A:260-272,280-291,292-303,315-327,418-424
3rzu C:261-272,280-291,292-303,315-327,418-424
3rzu F:261-272,280-291,292-303,315-327,418-424
2q0d A:28-45,47-52,66-73,73-80,132-140
2zci A:17-32,121-133,142-149,150-162,177-184
2zci D:17-32,124-133,142-149,150-162,177-184
2zci B:17-32,122-133,142-149,150-162,177-184
2zci C:17-32,125-133,142-149,150-162,177-184
2du6 B:358-367,432-438,439-445,450-458,517-521
2du6 A:358-367,432-438,439-445,450-458,517-521
2nom A:26-45,47-52,66-73,73-80,132-140
3gxh A:23-34,34-40,42-48,102-117,120-125
3gxh B:26-33,35-40,42-48,102-117,120-126
2q0f A:28-45,47-52,66-73,73-80,132-140
3lkh B:84-93,442-448,449-455,546-554,559-563
3e9h A:36-47,73-82,83-92,96-106,124-131
3e9h C:36-47,73-82,83-92,96-106,124-131
2qf2 B:24-39,137-147,154-162,163-175,189-196
2qf2 A:24-39,137-147,154-162,163-175,189-196
2qf1 A:24-39,134-147,154-162,163-175,189-196
2rke A:24-39,137-147,154-162,163-175,189-196
2q0g A:27-45,47-52,66-73,73-80,132-140
2q0g B:29-45,47-52,66-73,73-80,132-140
2q0e A:25-45,47-52,66-73,73-80,132-140
3a9s B:344-359,458-470,474-485,520-528,553-559
3a9s A:344-359,458-470,474-486,520-528,553-559
3a9s C:316-327,435-440,449-456,488-500,503-511
3a9s C:344-359,458-470,474-485,520-528,553-559
3a9s B:316-327,435-440,449-456,488-500,503-511
3a9s A:316-327,435-440,449-456,488-500,503-511
2q0c A:27-45,47-52,66-73,73-80,132-140
1ygg A:98-114,116-126,132-140,141-153,166-173
1ygg A:4-16,116-126,132-140,141-153,166-173
3dt2 A:24-39,137-147,154-162,163-175,189-196
3dtb A:24-39,137-147,154-162,163-175,189-196
3dtb B:24-39,137-147,154-162,163-175,189-196
2vak A:151-165,166-176,274-283,290-308,335-339
2vak E:151-165,166-176,274-283,290-308,335-339
2vak L:151-165,166-176,274-283,290-308,335-339
2vak C:151-165,166-176,274-283,290-308,335-339
2vak J:151-165,166-176,274-283,290-308,335-339
2vak F:151-165,166-176,274-283,290-308,335-339
2vak G:151-165,166-176,274-283,290-308,335-339
2vak I:151-165,166-176,274-283,290-308,335-339
2vak H:151-165,166-176,274-283,290-308,335-339
2vak D:151-165,166-176,274-283,290-308,335-339
2vak K:151-165,166-176,274-283,290-308,335-339
2vak B:151-165,166-176,274-283,290-308,335-339
2rkd A:24-39,137-147,154-162,163-175,189-196
3k5j A:0-16,50-57,63-71,74-92,133-142
2fah B:42-57,157-167,174-182,183-195,208-215
2fah A:42-57,157-167,174-182,183-195,208-215
2fah D:42-57,157-167,174-182,183-195,208-215
2fah C:42-57,157-167,174-182,183-195,208-215
3a9r B:344-359,458-470,474-486,520-528,553-559
3a9r A:344-359,458-470,474-486,520-528,553-559
3a9r C:316-327,435-440,449-456,488-500,503-511
3a9r C:344-359,458-470,474-486,520-528,553-559
3a9r B:316-327,435-440,449-456,488-500,503-511
3a9r A:316-327,435-440,449-456,488-500,503-511
2qzy A:42-57,157-167,174-182,183-195,208-215
2qzy B:42-57,157-167,174-182,183-195,208-215
3moh A:24-39,137-147,154-162,163-175,189-196
3moh B:24-39,137-147,154-162,163-175,189-196
1ylh A:98-114,114-126,132-140,141-153,166-173
1ylh A:4-16,114-126,132-140,141-153,166-173
3dt7 B:24-39,137-147,154-162,163-175,189-196
3dt7 A:24-39,137-147,154-162,163-175,189-196
3a9t B:344-359,458-470,474-486,520-528,553-559
3a9t A:344-359,458-470,474-485,520-528,553-559
3a9t C:316-327,435-440,449-456,488-500,503-511
3a9t C:344-359,458-470,474-486,520-528,553-559
3a9t B:316-327,435-440,449-456,488-500,503-511
3a9t A:316-327,435-440,449-456,488-500,503-511
1yvy B:1091-1107,1107-1119,1125-1133,1134-1146,1159-1166
1yvy A:91-107,107-119,125-133,134-146,159-166
1yvy A:2-11,107-119,125-133,134-146,159-166
1yvy B:1002-1011,1107-1119,1125-1133,1134-1146,1159-1166
2znr A:272-284,292-303,309-315,327-339,430-436
3rzv A:260-272,280-291,292-303,315-327,418-424
3iyl V:135-152,153-163,261-270,277-295,324-329
3iyl U:135-152,153-163,261-270,277-295,324-329
2rka C:24-39,137-147,154-162,163-175,189-196
2rka A:24-39,137-147,154-162,163-175,189-196
2faf A:42-57,157-167,174-182,183-195,208-215
2faf B:42-57,157-167,174-182,183-195,208-215
2znv D:272-284,292-303,304-315,327-339,430-436
2znv A:272-284,292-303,304-315,327-339,430-436