1. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
1t3m d1t3m.1 A:47-63,80-89,90-100,104-116,119-123
1k2x d1k2x.2 C:48-64,81-90,91-99,105-117,120-124
1apz d1apz.1 A:29-45,63-72,73-83,87-99,102-106
1p4v d1p4va_ A:30-46,64-72,74-83,87-99,102-106
1p4v d1p4vc_ C:330-346,364-372,374-383,387-399,402-406
2gaw d2gaw.2 C:30-46,64-72,74-83,87-99,102-106
2gaw d2gaw.1 A:30-46,64-72,74-81,87-99,102-106
1p4k d1p4kc_ C:330-346,364-372,374-383,387-399,402-406
1p4k d1p4ka_ A:30-46,64-72,74-83,87-99,102-106
9gaa d9gaaa_ A:30-46,64-72,74-83,87-99,102-106
1ayy d1ayy.2 C:30-46,64-72,74-83,87-99,102-106
2gac d2gac.2 C:30-46,64-72,74-83,87-99,102-106
1ayy d1ayy.1 A:30-46,64-72,74-83,87-99,102-106
2gac d2gac.1 A:30-46,64-72,74-83,87-99,102-106
9gaa d9gaac_ C:330-346,364-372,374-383,387-399,402-406
9gaf d9gafc_ C:330-346,364-372,374-383,387-399,402-406
9gaf d9gafa_ A:30-46,64-72,74-83,87-99,102-106
9gac d9gaca_ A:30-46,64-72,74-83,87-99,102-106
9gac d9gacc_ C:330-346,364-372,375-383,387-399,402-406
1jn9 d1jn9.2 C:48-64,81-90,91-99,105-118,120-124
1k2x d1k2x.1 A:48-64,81-90,91-101,105-118,120-124
1t3m d1t3m.2 C:47-63,80-89,90-100,104-117,119-123
1apy d1apy.1 A:29-45,63-72,73-83,87-100,102-106
1apz d1apz.2 C:29-45,63-72,73-83,87-100,102-106
1apy d1apy.2 C:29-45,63-72,73-83,87-100,102-106
1jn9 d1jn9.1 A:48-64,81-90,91-101,105-118,120-124
2. c.109.1 PEP carboxykinase N-terminal domain
PEP carboxykinase N-terminal domain contains mixed beta-sheets; topology is partly similar to that of the catalytic C-terminal domain
1k3d d1k3da2 A:28-38,114-126,132-140,141-153,166-173
1aq2 d1aq2a2 A:28-38,114-126,132-140,141-153,166-173
2olq d2olqa2 A:28-38,114-126,132-140,141-153,166-173
1oen d1oena2 A:28-38,114-126,132-140,141-153,166-173
2olr d2olra2 A:28-38,114-126,132-140,141-153,166-173
1os1 d1os1a2 A:28-38,116-126,132-140,141-153,166-173
1k3c d1k3ca2 A:28-38,114-126,132-140,141-153,166-173
2py7 d2py7x2 X:28-38,117-126,132-140,141-153,166-173
1ayl d1ayla2 A:28-38,114-126,132-140,141-153,166-173
2pxz d2pxzx2 X:28-38,117-126,132-140,141-153,166-173
1ii2 d1ii2a2 A:10-23,89-99,105-113,114-126,140-147
1ii2 d1ii2b2 B:10-23,89-99,105-113,114-126,140-147
1j3b d1j3bb2 B:20-32,97-107,113-121,122-134,151-158
2pc9 d2pc9a2 A:20-32,97-107,113-121,122-134,151-158
1j3b d1j3ba2 A:20-32,97-107,113-121,122-134,151-158
1xkv d1xkvb2 B:20-32,97-107,113-121,122-134,151-158
2pc9 d2pc9c2 C:20-32,97-107,113-121,122-134,151-158
1xkv d1xkva2 A:20-32,97-107,113-121,122-134,151-158
2pc9 d2pc9b2 B:20-32,97-107,113-121,122-134,151-158
2pc9 d2pc9d2 D:20-32,97-107,113-121,122-134,151-158
1khg d1khga2 A:49-64,137-147,154-162,163-175,189-196
1m51 d1m51a2 A:49-64,134-147,154-162,163-175,189-196
3. d.58.29 Nucleotide cyclase common fold is elaborated with additional secondary structures !
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
2v0n d2v0na3 A:300-317,320-329,412-420,426-445,447-452
1w25 d1w25a3 A:300-317,320-329,412-420,426-445,447-452
1w25 d1w25b3 B:300-317,320-329,412-420,426-445,447-452
4. d.128.1 Glutamine synthetase/guanido kinase
Glutamine synthetase/guanido kinase duplication: common core consists of two beta-alpha-beta2-alpha repeats
2df4 d2df4b2 B:159-178,188-200,205-213,216-238,241-251
2f2a d2f2ab2 B:159-178,188-198,206-213,216-239,244-251
2g5h d2g5hb2 B:159-178,188-199,205-213,216-238,241-251
2dqn d2dqnb2 B:159-178,188-199,205-213,216-238,241-251
2g5i d2g5ib2 B:159-178,188-199,205-213,216-238,243-251
1zq1 d1zq1d3 D:198-217,225-235,236-244,247-276,409-416
1zq1 d1zq1c3 C:198-217,225-235,236-244,247-276,410-416
2d6f d2d6fc3 C:193-212,219-229,230-238,241-270,397-403
2d6f d2d6fd3 D:193-212,219-229,230-238,241-270,395-403
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 998 (enumeration index: query411) of S5
3icl A:8-24,28-38,119-127,133-152,154-159
3juv A:71-81,94-101,102-109,233-242,397-404
3mtk B:202-215,220-229,306-314,320-339,341-348
3mtk A:202-215,220-229,306-314,320-339,341-348
3kqz B:338-348,441-448,450-457,460-477,543-547
3kqz C:338-348,441-448,450-457,460-477,543-547
3kqz D:338-348,441-448,450-457,460-477,543-547
3kqz G:338-348,442-448,450-456,460-477,543-547
3kqz F:338-348,441-448,450-457,460-477,543-547
3kqz A:338-348,441-448,450-457,460-477,543-547
3kqz I:338-348,441-448,450-457,460-477,543-547
3kqz J:338-348,441-448,450-457,460-477,543-547
3kqz H:338-348,441-448,450-457,460-477,543-547
3kqz L:338-348,441-448,450-457,460-477,543-547
3kqz E:338-348,441-448,450-457,460-477,543-547
3kqz K:338-348,441-448,450-457,460-477,543-547
1ytm A:23-33,107-119,125-133,134-146,159-166
1ytm B:1023-1033,1107-1119,1125-1133,1134-1146,1159-1166
3pjx A:247-260,265-275,359-369,372-391,394-398
3t8w A:338-348,441-448,450-457,460-477,543-547
3t8w J:338-348,441-448,450-457,460-477,543-547
3t8w H:338-348,441-448,450-457,460-477,543-547
3t8w L:338-348,441-448,450-457,460-477,543-547
3t8w K:338-348,441-448,450-457,460-477,543-547
3t8w D:338-348,441-448,450-457,460-477,543-547
3t8w B:338-348,441-448,450-457,460-477,543-547
3t8w C:338-348,441-448,450-457,460-477,543-547
3t8w E:338-348,441-448,450-457,460-477,543-547
3t8w G:338-348,441-448,450-457,460-477,543-547
3t8w I:338-348,441-448,450-457,460-477,543-547
3t8w F:338-348,441-448,450-457,460-477,543-547
2gl9 A:30-46,64-72,74-83,87-99,102-106
2gl9 C:330-346,364-372,374-383,387-399,402-406
3dt4 C:49-64,137-147,154-162,163-175,189-196
3qyy B:146-164,166-175,251-259,264-283,285-290
3qyy A:146-164,166-175,251-259,264-283,285-290
2zak B:48-64,81-90,91-99,105-118,120-124
2zak A:48-64,81-90,91-99,105-118,120-124
2wx2 A:38-49,66-73,74-81,209-220,376-383
3ign A:166-184,186-195,276-284,290-309,311-316
3moe A:49-64,137-147,154-162,163-175,189-196
3kqx G:338-348,441-448,450-457,460-477,543-547
3kqx A:338-348,441-448,450-457,460-477,543-547
3kqx J:338-348,441-448,450-457,460-477,543-547
3kqx D:338-348,441-448,450-457,460-477,543-547
3kqx C:338-348,441-448,450-457,460-477,543-547
3kqx I:338-348,442-448,450-456,460-477,543-547
3kqx H:338-348,441-448,450-457,460-477,543-547
3kqx L:338-348,441-448,450-457,460-477,543-547
3kqx B:338-348,441-448,450-457,460-477,543-547
3kqx K:338-348,441-448,450-457,460-477,543-547
3i5c A:182-200,202-211,295-304,311-330,332-337
3i5c B:182-200,202-211,295-304,311-330,332-337
3h0r H:162-181,191-203,209-215,219-241,246-254
3h0r T:162-181,191-203,208-215,219-241,246-254
3h0r K:162-181,191-203,208-215,219-241,246-254
3h0r N:162-181,191-203,209-215,219-241,246-254
3h0r B:162-181,191-203,208-215,219-241,246-254
3h0r Q:162-181,191-203,208-215,219-241,246-254
3h0r E:162-181,191-203,208-215,219-241,246-254
3h0r W:162-181,191-203,208-215,219-241,246-254
3ljq C:330-346,364-372,374-383,387-399,402-406
3ljq A:30-46,64-72,74-83,87-99,102-106
3kr4 E:338-348,441-448,450-457,460-477,543-547
3kr4 G:338-348,442-448,450-456,460-477,543-547
3kr4 C:338-348,441-448,450-457,460-477,543-547
3kr4 D:338-348,441-448,450-457,460-477,543-547
3kr4 J:338-348,441-448,450-457,460-477,543-547
3kr4 F:338-348,441-448,450-457,460-477,543-547
3kr4 H:338-348,441-448,450-457,460-477,543-547
3kr4 I:338-348,441-448,450-457,460-477,543-547
3kr4 K:338-348,441-448,450-457,460-477,543-547
3kr4 L:338-348,441-448,450-457,460-477,543-547
3kr4 A:338-348,441-448,450-457,460-477,543-547
3kr4 B:338-348,441-448,450-457,460-477,543-547
2a8j A:81-97,114-123,124-134,138-153,163-167
2a8j B:81-97,114-123,124-134,138-153,163-167
3kfu I:155-174,184-194,203-210,211-233,238-246
3kfu F:155-174,184-195,203-210,211-233,238-246
3c17 A:48-64,81-90,91-101,105-118,120-124
3c17 B:48-64,81-90,91-101,105-118,120-124
3i5b B:182-200,202-211,295-304,311-330,332-337
3i5b A:182-200,202-211,295-304,311-330,332-337
3ip4 B:159-178,188-200,205-213,216-238,241-251
3i5a A:180-198,200-209,293-302,308-327,329-334
2a8m A:81-97,114-123,124-134,138-153,163-167
2a8m B:81-97,114-123,124-134,138-153,163-167
2a8l B:81-97,114-123,124-134,138-153,163-167
2a8l A:81-97,114-123,124-134,138-153,163-167
2gez E:47-63,80-89,90-99,104-117,119-123
2gez C:47-63,80-89,90-99,104-117,119-123
2gez A:47-63,80-89,90-98,104-116,119-123
2gez G:47-63,80-89,90-98,104-117,119-123
2zal A:48-64,81-90,91-101,105-117,120-124
2zal C:48-64,81-90,91-101,105-117,120-124
1ygg A:28-38,116-126,132-140,141-153,166-173
3l4d A:43-52,65-72,73-80,208-215,375-382
3l4d C:42-52,65-72,73-80,208-215,375-382
3bre A:182-200,202-211,295-304,311-330,332-338
3bre B:182-200,202-211,295-304,311-330,332-337
3dt2 A:49-64,137-147,154-162,163-175,189-196
3g1q C:42-52,66-73,74-81,209-216,376-383
3g1q A:42-52,66-73,74-81,209-216,376-383
3g1q D:42-52,66-73,74-81,209-216,376-383
2fah A:67-82,157-167,174-182,183-195,208-215
2fah C:67-82,157-167,174-182,183-195,208-215
2fah D:67-82,157-167,174-182,183-195,208-215
2fah B:67-82,157-167,174-182,183-195,208-215
2a8i B:81-97,114-123,124-134,138-153,163-167
2a8i A:81-97,114-123,124-134,138-156,163-167
2qzy A:67-82,157-167,174-182,183-195,208-215
1ylh A:28-38,114-126,132-140,141-153,166-173
3h0l E:162-181,191-203,208-215,219-241,246-254
3h0l H:162-181,191-203,208-215,219-241,246-254
3h0l Q:162-181,191-203,208-215,219-241,246-254
3h0l W:162-181,191-203,208-215,219-241,246-254
3h0l K:162-181,191-203,208-215,219-241,246-254
3h0l N:162-181,191-203,208-215,219-241,246-254
3h0l T:162-181,191-203,208-215,219-241,246-254
3h0l B:162-181,191-203,208-215,219-241,246-254
3pjw A:247-261,265-275,359-369,372-391,394-398
1yvy B:1023-1033,1107-1119,1125-1133,1134-1146,1159-1166
1yvy A:23-33,107-119,125-133,134-146,159-166
3gw9 D:42-52,66-73,74-81,209-216,376-383
3gw9 C:39-52,66-73,74-81,209-216,376-383
3gw9 A:42-52,66-73,74-81,209-216,376-383
3gw9 B:42-52,66-73,74-81,209-216,376-383
2wuz A:42-52,66-73,74-81,209-216,376-383
3kr5 A:338-348,441-448,450-457,460-477,543-547
3kr5 J:338-348,441-448,450-457,460-477,543-547
3kr5 D:338-348,441-448,450-457,460-477,543-547
3kr5 F:338-348,441-448,450-457,460-477,543-547
3kr5 E:338-348,441-448,450-457,460-477,543-547
3kr5 B:338-348,441-448,450-457,460-477,543-547
3kr5 G:338-348,441-448,450-457,460-477,543-547
3kr5 L:338-348,441-448,450-457,460-477,543-547
3kr5 K:338-348,441-448,450-457,460-477,543-547
3kr5 H:338-348,441-448,450-457,460-477,543-547
3kr5 I:338-348,441-448,450-457,460-477,543-547
3kr5 C:338-348,441-448,450-457,460-477,543-547
3p99 B:42-52,66-73,74-81,209-216,376-383
3p99 D:43-52,66-73,74-81,209-216,376-383
3p99 C:42-52,66-73,74-81,209-216,376-383
2x2n B:42-52,66-73,74-81,209-216,376-383
2x2n C:42-52,66-73,74-81,209-216,376-383
2x2n A:42-52,66-73,74-81,209-216,376-383
2wb4 B:300-317,320-329,412-420,426-445,447-452
2wb4 A:300-317,320-329,412-420,426-445,447-452
3h0m E:162-181,191-203,208-215,219-241,246-254
3h0m H:162-181,191-203,209-215,219-241,246-254
3h0m K:162-181,191-203,209-215,219-241,246-254
3h0m T:162-181,191-203,208-215,219-241,246-254
3h0m W:162-181,191-203,208-216,219-241,246-254
3h0m B:162-181,191-203,208-215,219-241,246-254
3h0m Q:162-181,191-203,208-215,219-241,246-254
3h0m N:162-181,191-203,209-215,219-241,246-254
2rka A:49-64,137-147,154-162,163-175,189-196
2faf A:67-82,157-167,174-182,183-195,208-215