1. c.59.1 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 126345; strand 1 is antiparallel to the rest 1e8c d1e8cb2 B:341-346,351-357,442-455,457-464,481-491 1e8c d1e8ca2 A:341-346,351-357,442-455,457-464,481-491 2uuo d2uuoa2 A:303-310,311-318,389-401,404-410,421-438 2jfh d2jfha2 A:301-310,311-318,389-401,404-410,421-439 2jfg d2jfga2 A:301-310,311-318,389-401,404-410,421-439 2jff d2jffa2 A:301-310,311-318,389-401,404-410,421-439 2uup d2uupa2 A:301-310,311-318,389-401,404-410,421-439 1o5z d1o5za1 A:295-302,303-310,391-399,402-408,408-422 1gg4 d1gg4b1 B:815-823,825-832,909-925,926-933,938-947 4uag d4uaga2 A:301-310,311-318,389-401,403-410,421-437 1uag d1uaga2 A:301-310,311-318,389-401,403-410,421-437 2uag d2uaga2 A:301-310,311-318,389-401,404-410,421-437 1gqq d1gqqa2 A:326-336,337-346,436-448,450-458,460-475 1gqy d1gqya2 A:326-336,337-346,436-448,449-458,460-475 3uag d3uaga2 A:303-310,311-318,389-401,403-410,421-437 1gg4 d1gg4a1 A:315-322,325-332,409-425,426-433,438-447 1gqq d1gqqb2 B:326-336,337-346,436-448,449-458,460-475 1j6u d1j6ua2 A:300-309,310-318,407-415,419-427,428-446 1e0d d1e0da2 A:301-310,311-318,389-401,404-410,421-437 1eeh d1eeha2 A:303-310,311-317,389-401,403-410,421-437 1p3d d1p3da2 A:326-336,337-346,436-448,450-458,460-473 1p31 d1p31b2 B:326-336,337-346,436-448,449-458,460-473 1p3d d1p3db2 B:326-336,337-346,436-448,449-458,460-473 2gc5 d2gc5a1 A:300-306,309-316,390-403,406-412,412-425 2gcb d2gcba1 A:300-306,309-315,390-403,406-412,412-425 1jbv d1jbva1 A:300-306,309-314,390-403,406-411,412-425 2gc6 d2gc6a1 A:300-306,309-314,390-403,406-412,412-425 1fgs d1fgsa1 A:300-306,309-314,390-403,406-411,412-425 2gca d2gcaa1 A:300-306,309-314,390-403,406-411,412-425 1jbw d1jbwa1 A:300-306,309-314,390-403,405-411,412-425 3. c.77.1 Isocitrate/Isopropylmalate dehydrogenase-like the constituent families form similar dimers ! Isocitrate/Isopropylmalate dehydrogenase-like consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest 1v53 d1v53a1 A:102-110,128-136,220-232,236-241,241-256 2ayq d2ayqa_ A:102-110,128-136,220-232,236-241,241-256 2ayq d2ayqb_ B:102-110,128-136,220-232,236-241,241-256 1v53 d1v53b1 B:102-110,128-136,220-232,236-241,241-256 1lwd d1lwdb_ B:106-113,126-135,250-261,262-270,270-286 1lwd d1lwda_ A:106-113,126-135,250-261,262-270,270-286 1cnz d1cnzb_ B:105-113,132-140,225-237,241-246,246-262 2g4o d2g4ob1 B:93-101,115-123,209-221,225-230,230-246 1gc8 d1gc8a_ A:1100-1108,1126-1134,1215-1227,1231-1237,1236-1252 1t0l d1t0ld_ D:105-112,125-134,250-261,262-270,270-286 1t0l d1t0lb_ B:105-112,125-134,250-261,262-270,270-286 1w0d d1w0dd_ D:93-101,115-123,209-221,225-230,230-246 1w0d d1w0da_ A:93-101,115-123,209-221,225-230,230-246 1cm7 d1cm7b_ B:105-113,132-140,225-237,241-247,246-262 1cnz d1cnza_ A:105-113,132-140,225-237,241-246,246-262 1t0l d1t0lc_ C:105-112,125-134,250-261,262-270,270-286 1t0l d1t0la_ A:105-112,125-134,250-261,262-270,270-286 1w0d d1w0db_ B:93-101,115-123,209-221,225-230,230-246 1w0d d1w0dc_ C:93-101,115-123,209-221,225-230,230-246 2g4o d2g4od1 D:93-101,115-123,209-221,225-230,230-246 2g4o d2g4oa1 A:93-101,115-123,209-221,225-230,230-246 1wal d1wala_ A:98-108,126-134,215-227,231-236,236-251 1vlc d1vlca_ A:99-109,128-136,217-229,233-238,238-253 2g4o d2g4oc1 C:93-101,115-123,209-221,225-230,230-246 1osj d1osjb_ B:98-108,126-134,215-227,231-237,236-251 1osi d1osid_ D:98-108,126-134,215-227,231-237,236-251 1gc8 d1gc8b_ B:98-108,126-134,215-227,231-237,236-252 1osi d1osic_ C:98-108,126-134,215-227,231-237,236-251 1xac d1xaca_ A:98-108,126-134,215-227,231-236,236-252 1xad d1xada_ A:98-108,126-134,215-227,231-236,236-252 1hex d1hexa_ A:98-108,126-134,215-227,231-236,236-251 1a05 d1a05a_ A:101-108,128-135,220-232,236-241,241-257 1xab d1xaba_ A:98-108,126-134,215-227,231-236,236-251 1a05 d1a05b_ B:101-108,128-135,220-232,236-241,241-257 1gc9 d1gc9a_ A:98-108,126-134,215-227,231-237,236-251 1cm7 d1cm7a_ A:105-113,132-140,225-237,241-246,246-262 1xaa d1xaaa_ A:98-108,126-134,215-227,231-236,236-251 1osi d1osib_ B:98-108,126-134,215-227,231-236,236-251 1ipd d1ipda_ A:98-108,126-134,215-227,231-236,236-251 1g2u d1g2ua_ A:98-108,126-134,215-227,231-236,236-251 1osi d1osia_ A:98-108,126-134,215-227,231-236,236-251 1osj d1osja_ A:98-108,126-134,215-227,231-237,236-252 1idm d1idma_ A:96-106,124-132,213-225,229-234,234-249 1dr0 d1dr0a_ A:98-108,126-134,215-227,231-236,236-251 1dr8 d1dr8a_ A:97-108,126-134,215-227,231-236,236-252 1idc d1idca_ A:125-133,147-155,281-293,297-302,302-318 1cw7 d1cw7a_ A:125-133,147-155,281-293,297-302,302-318 1idd d1idda_ A:125-133,147-155,281-293,297-302,302-318 1pb1 d1pb1a_ A:125-133,147-155,281-293,297-302,302-318 1wpw d1wpwa_ A:91-99,110-118,198-210,214-219,219-235 1sjs d1sjsa_ A:125-133,147-155,281-293,297-302,302-318 1pb3 d1pb3a_ A:125-133,147-155,281-293,297-302,302-318 1dr0 d1dr0b_ B:98-108,126-134,215-227,231-236,236-252 1wpw d1wpwb_ B:91-99,110-118,198-210,214-219,219-235 8icd d8icda_ A:125-133,147-155,281-293,297-302,302-318 1gro d1groa_ A:125-133,147-155,281-293,297-302,302-318 1ai2 d1ai2a_ A:125-133,147-155,281-293,297-302,302-318 1dpz d1dpza_ A:98-108,126-134,215-227,231-237,236-252 4icd d4icda_ A:125-133,147-155,281-293,297-302,302-318 1cw1 d1cw1a_ A:125-133,147-155,281-293,297-302,302-318 1ai3 d1ai3a_ A:125-133,147-155,281-293,297-302,302-318 1grp d1grpa_ A:125-133,147-155,281-293,297-302,302-318 9icd d9icda_ A:125-133,147-155,281-293,297-302,302-318 1cw4 d1cw4a_ A:125-133,147-155,281-293,297-302,302-318 1p8f d1p8fa_ A:125-133,147-155,281-293,297-302,302-318 3icd d3icda_ A:125-133,147-155,281-293,297-302,302-318 5icd d5icda_ A:125-133,147-155,281-293,297-302,302-318 6icd d6icda_ A:125-133,147-155,281-293,297-302,302-318 1hj6 d1hj6a_ A:125-133,147-155,281-293,297-302,302-318 7icd d7icda_ A:125-133,147-155,281-293,297-302,302-318 1dr8 d1dr8b_ B:98-108,126-134,215-227,231-236,236-252 1ide d1idea_ A:125-133,147-155,281-293,297-302,302-318 1bl5 d1bl5a_ A:125-132,148-155,281-293,297-302,302-318 1hqs d1hqsa_ A:116-123,139-146,285-297,301-306,306-322 1dpz d1dpzb_ B:98-108,126-134,215-227,231-237,236-252 1idf d1idfa_ A:125-132,148-155,281-293,297-302,302-318 1iso d1isoa_ A:125-132,148-155,281-293,297-302,302-318 1hqs d1hqsb_ B:116-123,139-146,285-297,301-306,306-322 1t09 d1t09b_ B:105-112,125-133,250-261,262-270,278-285 1ika d1ikaa_ A:124-132,148-155,281-288,297-302,302-318 1j1w d1j1wc_ C:140-147,404-415,520-535,535-544,543-560 1j1w d1j1wb_ B:140-147,404-415,520-535,535-544,543-560 1j1w d1j1wd_ D:140-147,404-415,520-535,535-544,543-560 1j1w d1j1wa_ A:140-147,404-415,520-535,535-544,543-560 1itw d1itwd_ D:140-147,404-415,520-535,535-543,543-560 1itw d1itwc_ C:140-147,404-415,520-535,535-543,543-560 1itw d1itwa_ A:140-147,404-415,520-535,535-543,543-560 1itw d1itwb_ B:140-147,404-415,520-535,535-543,543-560 1u7n d1u7nb_ B:120-128,134-140,210-217,220-224,225-253 1u7n d1u7na_ A:120-128,134-140,210-217,220-224,225-253 1vi1 d1vi1a_ A:121-130,132-139,209-216,219-223,224-254 1vi1 d1vi1b_ B:121-130,132-139,209-216,219-223,224-254