1. b.18.1 Galactose-binding domain-like
Galactose-binding domain-like sandwich; 9 strands in 2 sheets; jelly-roll
2vz1 d2vz1a2 A:83-91,99-105,110-116,158-168,523-531
2jkx d2jkxa2 A:83-91,99-105,110-116,158-168,523-531
1gof d1gofa2 A:83-91,99-105,111-116,158-168,523-531
1k3i d1k3ia2 A:83-91,99-105,111-116,158-168,523-531
2eie d2eiea2 A:83-91,99-105,111-116,158-168,523-531
1goh d1goha2 A:83-91,99-105,111-116,158-168,523-531
2vz3 d2vz3a2 A:83-91,99-105,111-116,158-168,523-531
1t2x d1t2xa2 A:83-91,99-105,111-116,158-168,523-531
1gog d1goga2 A:83-91,99-105,111-116,158-168,523-531
2eid d2eida2 A:83-91,99-105,111-116,158-168,523-531
2eic d2eica2 A:83-91,99-105,111-116,158-168,523-531
2eib d2eiba2 A:83-91,99-105,111-116,158-168,523-531
2. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1w8x d1w8xj_ J:95-104,107-113,156-170,256-266,370-382
1gw8 d1gw8g_ G:1095-1104,1107-1113,1156-1170,1256-1266,1370-1382
1hb7 d1hb7g_ G:95-104,107-113,156-170,256-266,370-382
1gw7 d1gw7g_ G:1095-1104,1107-1113,1156-1170,1256-1266,1370-1382
1gw7 d1gw7d_ D:1095-1104,1107-1113,1156-1170,1256-1266,1370-1382
1gw8 d1gw8d_ D:1095-1104,1107-1113,1156-1170,1256-1266,1370-1382
1gw8 d1gw8j_ J:1095-1104,1107-1113,1156-1170,1256-1266,1370-1382
1hb7 d1hb7a_ A:95-104,107-113,156-170,256-266,370-382
1hb7 d1hb7j_ J:95-104,107-113,156-170,256-266,370-382
1hb7 d1hb7d_ D:95-104,107-113,156-170,256-266,370-382
1gw7 d1gw7j_ J:1095-1104,1107-1113,1156-1170,1256-1266,1370-1382
1gw8 d1gw8a_ A:1095-1104,1107-1113,1156-1170,1256-1266,1370-1382
1w8x d1w8xg_ G:95-104,107-113,156-170,256-266,370-382
1gw7 d1gw7a_ A:1095-1104,1107-1113,1156-1170,1256-1266,1370-1382
1w8x d1w8xc_ C:95-104,107-113,156-170,256-266,370-382
1w8x d1w8xh_ H:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9j_ J:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9a_ A:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9g_ G:95-104,107-113,156-170,256-266,370-382
1hb5 d1hb5a_ A:95-104,107-113,156-170,256-266,370-382
1hb5 d1hb5g_ G:95-104,107-113,156-170,256-266,370-382
1hb5 d1hb5d_ D:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9d_ D:95-104,107-113,156-170,256-266,370-382
1hb5 d1hb5b_ B:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9e_ E:95-104,107-113,156-170,256-266,370-382
1hb5 d1hb5e_ E:95-104,107-113,156-170,256-266,370-382
1hb5 d1hb5h_ H:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9h_ H:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9b_ B:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9k_ K:95-104,107-113,156-170,256-266,370-382
1w8x d1w8xi_ I:95-104,107-113,156-170,256-266,370-382
1gw8 d1gw8e_ E:2095-2104,2107-2113,2156-2170,2256-2266,2370-2382
1gw7 d1gw7k_ K:2095-2104,2107-2113,2156-2170,2256-2266,2370-2382
1gw8 d1gw8h_ H:2095-2104,2107-2113,2156-2170,2256-2266,2370-2382
1gw7 d1gw7h_ H:2095-2104,2107-2113,2156-2170,2256-2266,2370-2382
1hb7 d1hb7h_ H:95-104,107-113,156-170,256-266,370-382
1gw7 d1gw7e_ E:2095-2104,2107-2113,2156-2170,2256-2266,2370-2382
1hb7 d1hb7b_ B:95-104,107-113,156-170,256-266,370-382
1hb7 d1hb7e_ E:95-104,107-113,156-170,256-266,370-382
1hb7 d1hb7k_ K:95-104,107-113,156-170,256-266,370-382
1gw7 d1gw7b_ B:2095-2104,2107-2113,2156-2170,2256-2266,2370-2382
1hb5 d1hb5i_ I:95-104,107-113,156-170,256-266,370-382
1gw8 d1gw8k_ K:2095-2104,2107-2113,2156-2170,2256-2266,2370-2382
1gw8 d1gw8b_ B:2095-2104,2107-2113,2156-2170,2256-2266,2370-2382
1hb5 d1hb5f_ F:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9f_ F:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9c_ C:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9l_ L:95-104,107-113,156-170,256-266,370-382
1hb5 d1hb5c_ C:95-104,107-113,156-170,256-266,370-382
1hb9 d1hb9i_ I:95-104,107-113,156-170,256-266,370-382
1hb7 d1hb7l_ L:95-104,107-113,156-170,256-266,370-382
1gw8 d1gw8c_ C:3095-3104,3107-3113,3156-3170,3256-3266,3370-3382
1hb7 d1hb7i_ I:95-104,107-113,156-170,256-266,370-382
1gw7 d1gw7c_ C:3095-3104,3107-3113,3156-3170,3256-3266,3370-3382
1gw7 d1gw7l_ L:3095-3104,3107-3113,3156-3170,3256-3266,3370-3382
1gw7 d1gw7f_ F:3095-3104,3107-3113,3156-3170,3256-3266,3370-3382
1w8x d1w8xf_ F:95-104,107-113,156-170,256-266,370-382
1gw8 d1gw8f_ F:3095-3104,3107-3113,3156-3170,3256-3266,3370-3382
1gw8 d1gw8l_ L:3095-3104,3107-3113,3156-3170,3256-3266,3370-3382
1hb7 d1hb7c_ C:95-104,107-113,156-170,256-266,370-382
1hb7 d1hb7f_ F:95-104,107-113,156-170,256-266,370-382
1gw7 d1gw7i_ I:3095-3104,3107-3113,3156-3170,3256-3266,3370-3382
1gw8 d1gw8i_ I:3095-3104,3107-3113,3156-3170,3256-3266,3370-3382
1w8x d1w8xb_ B:95-104,107-113,156-170,256-266,370-382
1w8x d1w8xa_ A:95-104,107-113,156-170,256-266,370-382
1w8x d1w8xe_ E:95-104,107-113,156-170,256-266,370-382
1w8x d1w8xd_ D:95-104,107-113,156-170,256-266,370-382
1w8x d1w8xl_ L:95-104,106-113,156-170,256-266,370-382
1w8x d1w8xk_ K:95-104,107-113,156-170,258-266,370-381
3. b.121.2 Group II dsDNA viruses VP duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits ! trimeric; in the trimers, the domains are arranged around pseudo six-fold axis !
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1cjd d1cjda1 A:95-104,107-113,156-170,256-266,370-382
1hx6 d1hx6a1 A:95-104,107-113,156-170,256-266,370-382
1hqn d1hqna1 A:95-104,107-113,156-170,256-266,370-382
1cjd d1cjdc1 C:95-104,107-113,156-170,256-266,370-382
1hx6 d1hx6b1 B:95-104,107-113,156-170,256-266,370-382
1hx6 d1hx6c1 C:95-104,107-113,156-170,256-266,370-382
1cjd d1cjdb1 B:95-104,107-113,156-170,256-266,370-382
1hqn d1hqnc1 C:95-104,107-113,156-170,256-266,370-382
1hqn d1hqnb1 B:95-104,106-113,156-170,256-266,370-382
4. d.58.29 Nucleotide cyclase common fold is elaborated with additional secondary structures !
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
1cs4 d1cs4b_ B:883-892,996-1004,1004-1009,1038-1042,1068-1076
1cjv d1cjvb_ B:883-892,996-1004,1004-1009,1038-1042,1068-1076
1cjt d1cjtb_ B:883-892,996-1004,1004-1009,1038-1042,1068-1076
1cul d1cula_ A:389-398,482-491,491-496,525-529,561-565
1cjt d1cjta_ A:389-398,482-491,491-496,525-529,561-565
1azs d1azsa_ A:388-399,481-491,491-496,525-529,561-565
5. b.49.2 Alanine racemase C-terminal domain-like the barrel is decorated with additional structures !
Domain of alpha and beta subunits of F1 ATP synthase-like barrel, closed; n=6, S=8; greek-key
1hkv d1hkva1 A:317-325,327-336,353-360,363-372,384-390
6. b.121.1 PHM/PNGase F members of this superfamily bind peptide substrates ! duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits !
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1yjl d1yjla1 A:90-100,153-160,165-175,199-209,314-325
1yi9 d1yi9a1 A:90-101,153-160,165-175,199-209,314-325
1phm d1phma1 A:90-101,153-160,165-175,199-209,313-325
1yjk d1yjka1 A:90-101,153-160,165-175,199-209,313-325
1opm d1opma1 A:90-101,153-160,165-175,199-209,313-325
3phm d3phma1 A:91-101,153-159,165-175,199-209,313-325
1sdw d1sdwa1 A:90-101,153-160,165-175,199-209,313-325
1yip d1yipa1 A:90-101,153-160,165-175,199-209,312-325
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 70 (enumeration index: query474.475) of S5
3mll A:91-101,153-159,165-175,199-209,313-325
3g82 A:389-398,482-491,491-496,525-529,560-565
3mr7 C:4-13,92-101,101-106,127-132,161-168
3mr7 B:4-13,92-101,101-106,127-132,161-168
3maa A:388-399,481-491,491-496,525-529,560-565
3c15 A:389-399,481-491,491-496,525-529,561-565
2qya C:3-12,13-22,33-39,68-76,99-109
3mif A:90-101,153-160,165-175,199-209,313-325
2wp4 B:2-6,12-17,52-59,82-91,98-108
2ygb C:319-324,325-334,339-345,364-375,376-387
2ygb A:319-324,325-334,339-345,364-375,376-387
2ygb B:319-324,325-334,339-345,364-375,376-387
3mih A:90-101,153-160,165-175,199-209,313-325
2bbd D:61-70,72-79,107-121,181-197,301-316
2bbd B:61-70,72-79,107-121,181-197,301-316
2bbd C:61-70,72-79,107-121,181-197,301-316
2bbd A:61-70,72-79,107-121,181-197,301-316
3nqz A:75-86,87-91,110-114,156-162,164-178
3mib A:90-101,153-160,165-175,199-209,313-325
3mig A:91-101,153-159,165-175,199-209,313-325
2ygc B:319-324,325-334,339-346,364-375,376-387
2ygc A:319-324,325-334,339-346,364-375,376-387
2ygc C:319-324,325-334,339-346,364-375,376-387
3mic A:90-101,153-160,165-175,199-209,313-325
3mie A:90-101,153-160,165-175,199-209,313-325
2o0t D:317-325,327-336,353-357,363-372,384-390
2o0t B:317-325,327-336,353-357,363-372,384-390
2o0t A:317-325,327-336,353-357,363-372,384-390
2o0t C:317-325,327-336,353-357,363-372,384-390
3saq A:319-324,325-334,339-345,364-375,376-387
3saq B:319-324,325-334,339-345,364-375,376-387
3mlk A:90-101,153-160,165-175,199-209,313-325
3mlj A:90-101,153-160,165-175,199-209,313-325
3nqy A:75-86,87-91,110-114,156-162,164-178
2wq8 A:83-91,99-105,110-116,158-168,523-531
3sam A:319-324,325-334,339-345,364-375,376-387
3sam C:319-324,325-334,339-345,364-375,376-387
3sam B:319-324,325-334,339-345,364-375,376-387
3mid A:90-101,153-160,165-175,199-209,313-325