1. d.58.29 Nucleotide cyclase common fold is elaborated with additional secondary structures !
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
2gvz d2gvzb1 B:884-892,996-1003,1021-1034,1038-1042,1068-1076
1cul d1culb_ B:883-892,996-1004,1021-1034,1038-1042,1068-1076
1cs4 d1cs4b_ B:883-892,996-1004,1021-1034,1038-1042,1068-1076
1cju d1cjub_ B:883-892,996-1004,1021-1034,1038-1042,1068-1076
1cjt d1cjtb_ B:883-892,996-1004,1021-1034,1038-1042,1068-1076
1cjv d1cjvb_ B:883-892,996-1004,1021-1034,1038-1042,1068-1076
2gvd d2gvdb1 B:883-892,996-1003,1021-1034,1038-1042,1068-1076
1u0h d1u0hb_ B:883-892,996-1003,1021-1034,1038-1042,1068-1076
1cjk d1cjkb_ B:883-892,996-1004,1021-1034,1038-1042,1068-1076
1tl7 d1tl7b_ B:883-892,996-1003,1021-1034,1038-1042,1068-1076
1wc1 d1wc1a_ A:1010-1019,1115-1124,1142-1155,1158-1163,1189-1196
1wc5 d1wc5c_ C:1010-1019,1115-1124,1142-1155,1158-1163,1189-1196
1azs d1azsb_ B:883-892,996-1004,1021-1034,1037-1042,1068-1076
1wc1 d1wc1b_ B:1010-1019,1115-1124,1142-1155,1158-1163,1189-1196
1wc5 d1wc5d_ D:1010-1019,1115-1123,1142-1155,1158-1163,1189-1196
1wc5 d1wc5b_ B:1010-1019,1115-1124,1142-1156,1158-1163,1189-1196
1wc5 d1wc5a_ A:1010-1019,1115-1124,1142-1155,1158-1163,1189-1196
1cul d1cula_ A:389-398,482-491,508-521,525-529,561-565
1wc6 d1wc6b_ B:1010-1019,1115-1124,1142-1156,1158-1163,1189-1196
1wc6 d1wc6a_ A:1010-1019,1115-1124,1142-1156,1158-1163,1189-1196
1wc6 d1wc6c_ C:1010-1019,1115-1124,1142-1156,1158-1163,1189-1196
1cjt d1cjta_ A:389-398,482-491,508-521,525-529,561-565
1wc1 d1wc1c_ C:1005-1019,1115-1124,1142-1156,1158-1163,1189-1196
1fx2 d1fx2a_ A:899-908,1020-1029,1044-1058,1061-1066,1097-1104
1wc0 d1wc0b_ B:1010-1020,1114-1124,1142-1155,1158-1163,1189-1196
1wc3 d1wc3b_ B:1010-1020,1114-1124,1142-1155,1158-1163,1189-1196
1wc0 d1wc0a_ A:1010-1020,1114-1124,1142-1155,1158-1163,1189-1196
1wc4 d1wc4a_ A:1009-1020,1114-1124,1142-1155,1158-1163,1189-1196
1fx4 d1fx4a_ A:887-896,1008-1017,1033-1047,1049-1054,1085-1092
1wc3 d1wc3a_ A:1010-1020,1114-1124,1142-1155,1158-1163,1189-1196
1wc4 d1wc4b_ B:1007-1020,1114-1124,1142-1155,1158-1163,1189-1196
1azs d1azsa_ A:388-399,481-491,508-521,525-529,561-565
2. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1w8x d1w8xj_ J:95-104,107-113,113-126,256-266,370-382
1w8x d1w8xc_ C:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9e_ E:95-104,107-113,113-126,256-266,370-382
1hb5 d1hb5b_ B:95-104,107-113,113-126,256-266,370-382
1hb5 d1hb5h_ H:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9b_ B:95-104,107-113,113-126,256-266,370-382
1hb5 d1hb5e_ E:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9k_ K:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9h_ H:95-104,107-113,113-126,256-266,370-382
1gw8 d1gw8e_ E:2095-2104,2107-2113,2113-2126,2256-2266,2370-2382
1gw7 d1gw7k_ K:2095-2104,2107-2113,2113-2126,2256-2266,2370-2382
1gw7 d1gw7h_ H:2095-2104,2107-2113,2113-2126,2256-2266,2370-2382
1gw8 d1gw8h_ H:2095-2104,2107-2113,2113-2126,2256-2266,2370-2382
1gw7 d1gw7e_ E:2095-2104,2107-2113,2113-2126,2256-2266,2370-2382
1hb7 d1hb7b_ B:95-104,107-113,113-126,256-266,370-382
1hb7 d1hb7h_ H:95-104,107-113,113-126,256-266,370-382
1hb7 d1hb7e_ E:95-104,107-113,113-126,256-266,370-382
1hb7 d1hb7k_ K:95-104,107-113,113-126,256-266,370-382
1gw8 d1gw8k_ K:2095-2104,2107-2113,2113-2126,2256-2266,2370-2382
1gw7 d1gw7b_ B:2095-2104,2107-2113,2113-2126,2256-2266,2370-2382
1gw8 d1gw8b_ B:2095-2104,2107-2113,2113-2126,2256-2266,2370-2382
1gw8 d1gw8g_ G:1095-1104,1107-1113,1113-1126,1256-1266,1370-1382
1gw7 d1gw7g_ G:1095-1104,1107-1113,1113-1126,1256-1266,1370-1382
1hb7 d1hb7g_ G:95-104,107-113,113-126,256-266,370-382
1gw8 d1gw8d_ D:1095-1104,1107-1113,1113-1126,1256-1266,1370-1382
1gw7 d1gw7d_ D:1095-1104,1107-1113,1113-1126,1256-1266,1370-1382
1gw8 d1gw8j_ J:1095-1104,1107-1113,1113-1126,1256-1266,1370-1382
1hb7 d1hb7a_ A:95-104,107-113,113-126,256-266,370-382
1gw7 d1gw7a_ A:1095-1104,1107-1113,1113-1126,1256-1266,1370-1382
1gw7 d1gw7j_ J:1095-1104,1107-1113,1113-1126,1256-1266,1370-1382
1hb7 d1hb7j_ J:95-104,107-113,113-126,256-266,370-382
1hb7 d1hb7d_ D:95-104,107-113,113-126,256-266,370-382
1gw8 d1gw8a_ A:1095-1104,1107-1113,1113-1126,1256-1266,1370-1382
1w8x d1w8xg_ G:95-104,107-113,113-126,256-266,370-382
1hb7 d1hb7l_ L:95-104,107-113,113-126,256-266,370-382
1hb7 d1hb7i_ I:95-104,107-113,113-126,256-266,370-382
1gw8 d1gw8c_ C:3095-3104,3107-3113,3113-3126,3256-3266,3370-3382
1w8x d1w8xf_ F:95-104,107-113,113-126,256-266,370-382
1gw7 d1gw7l_ L:3095-3104,3107-3113,3113-3126,3256-3266,3370-3382
1gw7 d1gw7f_ F:3095-3104,3107-3113,3113-3126,3256-3266,3370-3382
1gw8 d1gw8l_ L:3095-3104,3107-3113,3113-3126,3256-3266,3370-3382
1gw8 d1gw8f_ F:3095-3104,3107-3113,3113-3126,3256-3266,3370-3382
1gw7 d1gw7c_ C:3095-3104,3107-3113,3113-3126,3256-3266,3370-3382
1hb7 d1hb7c_ C:95-104,107-113,113-126,256-266,370-382
1hb7 d1hb7f_ F:95-104,107-113,113-126,256-266,370-382
1gw7 d1gw7i_ I:3095-3104,3107-3113,3113-3126,3256-3266,3370-3382
1gw8 d1gw8i_ I:3095-3104,3107-3113,3113-3126,3256-3266,3370-3382
1hb9 d1hb9j_ J:95-104,107-113,113-126,256-266,370-382
1w8x d1w8xh_ H:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9g_ G:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9a_ A:95-104,107-113,113-126,256-266,370-382
1hb5 d1hb5g_ G:95-104,107-113,113-126,256-266,370-382
1hb5 d1hb5f_ F:95-104,107-113,113-126,256-266,370-382
1hb5 d1hb5d_ D:95-104,107-113,113-126,256-266,370-382
1hb5 d1hb5a_ A:95-104,107-113,113-126,256-266,370-382
1hb5 d1hb5i_ I:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9d_ D:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9l_ L:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9f_ F:95-104,107-113,113-126,256-266,370-382
1hb5 d1hb5c_ C:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9c_ C:95-104,107-113,113-126,256-266,370-382
1hb9 d1hb9i_ I:95-104,107-113,113-126,256-266,370-382
1w8x d1w8xi_ I:95-104,107-113,113-126,256-266,370-382
1w8x d1w8xb_ B:95-104,107-113,113-126,256-266,370-382
1w8x d1w8xa_ A:95-104,107-113,113-126,256-266,370-382
1w8x d1w8xe_ E:95-104,107-113,113-126,256-266,370-382
1w8x d1w8xd_ D:95-104,107-113,113-126,256-266,370-382
1w8x d1w8xl_ L:95-104,106-113,113-126,256-266,370-382
1w8x d1w8xk_ K:95-104,107-113,113-126,258-266,370-381
3. b.121.2 Group II dsDNA viruses VP duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits ! trimeric; in the trimers, the domains are arranged around pseudo six-fold axis !
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1hx6 d1hx6b1 B:95-104,107-113,113-126,256-266,370-382
1cjd d1cjda1 A:95-104,107-113,113-126,256-266,370-382
1cjd d1cjdc1 C:95-104,107-113,113-126,256-266,370-382
1hqn d1hqna1 A:95-104,107-113,113-126,256-266,370-382
1hx6 d1hx6a1 A:95-104,107-113,113-126,256-266,370-382
1hx6 d1hx6c1 C:95-104,107-113,113-126,256-266,370-382
1cjd d1cjdb1 B:95-104,107-113,113-126,256-266,370-382
1hqn d1hqnc1 C:95-104,107-113,113-126,256-266,370-382
1hqn d1hqnb1 B:95-104,106-113,113-126,256-266,370-382
4. d.341.1 Peptidoglycan deacetylase N-terminal noncatalytic region
Peptidoglycan deacetylase N-terminal noncatalytic region consists of two different domains, d1: [alpha-beta(2)-alpha-beta(3); 3 layers: a/b/a; mixed beta-sheet, order 12345, strands 2 and 3 are parallel to each other with a left-handed crossover connection], d2: alpha-beta(3)-alpha; 2 layers; antiparallel beta-sheet, order 123]
2c1i d2c1ia2 A:64-73,74-85,89-104,106-120,124-136
2c1g d2c1ga2 A:64-73,74-85,89-105,108-120,124-137
5. d.261.1 Hypothetical protein PH1602
Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold
1uc2 d1uc2a_ A:11-16,24-30,31-42,58-64,75-82
1uc2 d1uc2a_ A:11-16,24-30,42-53,58-64,75-82
1uc2 d1uc2b_ B:11-16,24-30,31-42,58-64,75-82
1uc2 d1uc2b_ B:11-16,24-30,42-53,58-64,75-82
6. b.70.3 DPP6 N-terminal domain-like
8-bladed beta-propeller consists of eight 4-stranded beta-sheet motifs; meander ! also found in some members of the WD40-repeat superfamily
2ajb d2ajba1 A:413-420,428-436,444-451,455-462,466-475
1r9n d1r9nd1 D:413-421,428-436,444-451,455-462,466-475
2i78 d2i78d1 D:413-420,428-436,444-451,455-462,466-475
7. b.49.2 Alanine racemase C-terminal domain-like the barrel is decorated with additional structures !
Domain of alpha and beta subunits of F1 ATP synthase-like barrel, closed; n=6, S=8; greek-key
1hkw d1hkwa1 A:317-325,327-336,342-349,364-372,384-389
8. d.128.1 Glutamine synthetase/guanido kinase
Glutamine synthetase/guanido kinase duplication: common core consists of two beta-alpha-beta2-alpha repeats
2g5h d2g5hb2 B:188-199,205-213,216-238,241-251,252-261
2dqn d2dqnb2 B:188-199,205-213,216-238,241-251,252-261
2df4 d2df4b2 B:188-200,205-213,216-238,241-251,252-261
2d6f d2d6fc3 C:219-229,230-238,241-270,397-403,407-414
2d6f d2d6fd3 D:219-229,230-238,241-270,395-403,407-413
2g5i d2g5ib2 B:188-199,205-213,216-238,243-251,252-261
2f2a d2f2ab2 B:188-198,206-213,216-239,244-251,252-259
1zq1 d1zq1d3 D:225-235,236-244,247-276,409-416,418-425
1zq1 d1zq1c3 C:225-235,236-244,247-276,410-416,418-425
9. b.120.1 Tp47 lipoprotein, N-terminal domain
Tp47 lipoprotein, N-terminal domain complex fold; consists of two intertwined subdomains
1o75 d1o75b3 B:7-16,146-164,166-175,187-194,196-204
1o75 d1o75a3 A:7-16,146-164,166-175,187-194,196-204
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 551 (enumeration index: query476.477) of S5
3cyg B:40-50,52-63,67-94,105-118,120-132
3cyg A:40-50,52-63,67-100,105-119,120-132
2vh2 A:197-204,207-213,215-230,237-243,249-254
2vh2 B:197-204,206-213,215-230,239-243,249-253
3oss D:4-13,38-44,48-64,103-110,141-148
1yk9 A:249-258,342-351,368-381,384-389,417-426
3et6 B:474-484,569-577,595-608,612-616,643-651
3et6 A:474-484,569-577,595-608,612-616,644-651
3csy K:230-237,239-244,249-264,271-277,304-308
3csy M:230-237,239-244,249-264,271-277,304-308
3csy O:230-237,239-244,249-264,271-277,304-308
3csy I:230-237,239-244,249-264,271-277,304-308
3g82 A:389-398,482-491,508-521,525-529,560-565
3mr7 B:4-13,92-101,111-124,127-132,161-168
3mr7 A:4-13,92-101,111-124,127-132,161-168
3mr7 C:4-13,92-101,111-124,127-132,161-168
2w01 E:436-450,538-547,565-578,581-586,613-624
2w01 F:436-450,538-547,565-579,581-586,613-624
2w01 C:437-450,538-547,565-578,581-586,613-624
2w01 B:437-450,538-547,565-579,581-586,613-624
2w01 A:436-450,538-547,565-578,581-586,613-624
2w01 D:437-450,538-547,565-579,581-586,613-624
2wz1 A:418-428,518-527,544-557,560-565,598-607
2wz1 B:418-428,518-527,544-557,560-565,598-607
2bw7 C:1010-1019,1115-1124,1142-1155,1158-1163,1189-1196
2bw7 B:1005-1019,1115-1124,1142-1156,1158-1163,1189-1196
2bw7 D:1010-1019,1115-1124,1142-1156,1158-1163,1189-1196
2bw7 A:1010-1019,1115-1124,1142-1155,1158-1163,1189-1196
2zze B:549-553,554-558,602-628,631-640,641-649
3s5t A:32-46,53-68,69-86,135-149,150-163
3s5t A:32-46,53-68,93-124,135-149,150-163
2epg A:9-15,21-27,28-39,57-63,74-80
2epg B:9-15,21-27,28-39,57-63,74-80
2epg B:9-15,21-27,40-52,57-63,74-80
2epg A:9-15,21-27,40-52,57-63,74-80
1y10 B:213-224,296-305,315-328,331-337,370-376
1y10 A:213-224,296-305,315-328,331-337,368-376
1y10 D:213-224,296-305,314-328,331-337,368-376
1y10 C:213-223,296-305,314-328,330-337,368-377
1y11 A:213-224,296-305,315-328,331-337,368-377
3maa A:388-399,481-491,508-521,525-529,560-565
3c15 A:389-399,481-491,508-521,525-529,561-565
3c15 B:883-892,996-1004,1021-1034,1038-1042,1068-1076
3c14 A:389-399,481-491,508-521,525-529,561-565
3c14 B:883-892,996-1003,1021-1034,1038-1042,1067-1076
3ezj G:7-13,38-44,48-64,103-110,141-148
3ezj A:7-13,38-44,48-64,103-110,141-148
3ezj C:7-13,38-44,48-64,103-110,141-148
3ezj E:7-13,38-44,48-64,103-110,141-148
3h0r T:191-203,208-215,219-241,246-254,255-260
3h0r K:191-203,208-215,219-241,246-254,255-260
3h0r W:191-203,208-215,219-241,246-254,255-260
3h0r Q:191-203,208-215,219-241,246-254,255-260
3h0r B:191-203,208-215,219-241,246-254,255-260
3h0r E:191-203,208-215,219-241,246-254,255-260
3h0r H:191-203,209-215,219-241,246-254,255-260
3h0r N:191-203,209-215,219-241,246-254,255-260
2wp4 B:2-6,12-17,61-81,82-91,98-108
3kfu I:184-194,203-210,211-233,238-246,247-253
3kfu F:184-195,203-210,211-233,238-246,247-253
2bbd A:61-70,72-79,79-92,181-197,301-316
2bbd C:61-70,72-79,79-92,181-197,301-316
2bbd B:61-70,72-79,79-92,181-197,301-316
2bbd D:61-70,72-79,79-92,181-197,301-316
2xrc D:105-114,119-123,128-140,162-168,178-184
3g7q A:155-161,163-169,296-326,329-334,340-346
3ip4 B:188-200,205-213,216-238,241-251,252-261
3b4r A:4-11,12-18,37-67,68-76,77-84
3b4r B:4-11,12-18,37-67,68-76,77-84
3fuy B:12-20,21-29,37-59,68-81,83-96
3fuy C:12-20,21-29,37-59,69-81,83-96
3fuy A:12-20,21-29,37-59,68-81,83-95
3if2 B:172-177,184-190,322-352,355-360,365-372
3if2 A:172-177,184-190,322-352,355-360,365-372
3h0l T:191-203,208-215,219-241,246-254,255-260
3h0l E:191-203,208-215,219-241,246-254,255-260
3h0l K:191-203,208-215,219-241,246-254,255-260
3h0l B:191-203,208-215,219-241,246-254,255-260
3h0l Q:191-203,208-215,219-241,246-254,255-260
3h0l N:191-203,208-215,219-241,246-254,255-260
3h0l W:191-203,208-215,219-241,246-254,255-260
3h0l H:191-203,208-215,219-241,246-254,255-260
3c16 B:883-892,996-1004,1021-1034,1038-1042,1068-1076
2zzf A:549-553,554-558,602-628,631-640,641-649
1w18 B:151-161,174-184,205-214,219-231,236-248
1w18 A:151-161,174-184,205-214,219-232,236-248
1ybt A:295-304,375-384,398-412,414-419,447-454
1ybt B:295-304,375-384,398-411,414-419,447-454
1ybt D:295-304,375-384,398-412,414-419,447-454
1ybt C:295-304,375-384,398-411,414-419,447-454
3h0m W:191-203,208-216,219-241,246-254,255-260
3h0m H:191-203,209-215,219-241,246-254,255-260
3h0m Q:191-203,208-215,219-241,246-254,255-260
3h0m E:191-203,208-215,219-241,246-254,255-260
3h0m B:191-203,208-215,219-241,246-254,255-260
3h0m N:191-203,209-215,219-241,246-254,255-260
3h0m K:191-203,209-215,219-241,246-254,255-260
3h0m T:191-203,208-215,219-241,246-254,255-260
2z0r G:8-14,26-34,35-47,76-80,88-92
2hhi A:17-26,27-35,40-63,68-75,92-98
1ybu B:292-304,375-384,398-412,414-420,447-454
1ybu D:291-304,375-384,398-411,414-420,448-454
1ybu C:292-304,375-384,398-412,414-420,447-454
1ybu A:291-304,375-384,398-411,414-420,447-454
2vh1 A:197-204,206-213,215-227,238-247,250-259
2vh1 B:197-204,206-213,215-227,242-247,250-256
2vh1 A:197-204,206-213,226-238,238-247,250-259