1. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1ywk d1ywkc1 C:999-1006,1016-1025,1033-1042,1043-1053,1232-1239
1ywk d1ywkb1 B:998-1006,1016-1025,1033-1042,1043-1053,1232-1238
1x8m d1x8mf_ F:6004-6008,6018-6027,6035-6044,6045-6054,6236-6243
1x8m d1x8mc_ C:3004-3008,3018-3027,3035-3044,3045-3054,3236-3243
1x8m d1x8md_ D:4004-4008,4018-4027,4035-4044,4045-4054,4236-4243
1x8m d1x8mb_ B:2004-2008,2018-2027,2035-2044,2045-2054,2236-2243
1x8m d1x8ma_ A:1004-1008,1018-1027,1035-1044,1045-1054,1236-1243
1x8m d1x8me_ E:5004-5008,5018-5027,5035-5044,5045-5054,5236-5243
1x8m d1x8ma_ A:1004-1008,1010-1017,1035-1044,1045-1054,1236-1243
1x8m d1x8me_ E:5004-5008,5010-5017,5035-5044,5045-5054,5236-5243
1x8m d1x8mb_ B:2004-2008,2010-2017,2035-2044,2045-2054,2236-2243
1x8m d1x8md_ D:4004-4008,4010-4017,4035-4044,4045-4054,4236-4243
1x8m d1x8mc_ C:3004-3008,3010-3017,3035-3044,3045-3054,3236-3243
1x8m d1x8mf_ F:6004-6008,6010-6017,6035-6044,6045-6054,6236-6243
2. c.67.2 PhnH-like single domain protein of similar topology to the core domain of PLP-transferases
PLP-dependent transferase-like main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
2fsu d2fsua1 A:120-127,154-164,171-179,180-187,189-193
3. b.6.1 Cupredoxins contains copper-binding site !
Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands
1ws7 d1ws7d_ D:2-7,20-29,32-42,69-78,81-87
1ws7 d1ws7a_ A:2-7,20-29,32-42,69-78,81-87
1ws7 d1ws7c_ C:2-7,20-29,32-40,70-78,81-87
1ws8 d1ws8d_ D:2-7,20-29,32-42,69-78,81-87
1ws8 d1ws8a_ A:2-7,20-29,33-42,69-77,79-87
4. c.52.1 Restriction endonuclease-like
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
1ob9 d1ob9a_ A:46-57,64-79,80-92,93-101,106-110
1ob8 d1ob8b_ B:46-57,64-79,80-92,93-101,106-110
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 696 (enumeration index: query479) of S5
2w8m B:88-99,120-131,135-144,145-152,177-183
2w8m A:88-99,120-131,135-144,145-152,177-183
3erc A:132-138,149-168,170-177,207-214,217-225
3erc B:132-138,149-168,170-177,207-214,217-225
3lqc A:6-13,16-27,41-50,126-134,142-151
3lqc A:6-13,27-38,41-50,126-134,142-151
3er8 A:132-138,149-168,170-177,207-214,217-225
3er8 B:132-138,149-168,170-177,207-214,217-225