3. d.199.1 DNA-binding C-terminal domain of the transcription factor MotA MotA C-terminal domain-like alpha-beta(4)-alpha-beta(2)-alpha; 2 layers: alpha/beta 1kaf d1kafb_ B:107-125,148-156,158-166,168-179,197-211 1kaf d1kafe_ E:109-125,148-156,158-166,168-179,197-211 1kaf d1kafd_ D:108-125,148-156,158-166,168-179,197-211 1kaf d1kafa_ A:107-125,148-156,158-166,168-179,197-211 1kaf d1kafc_ C:107-125,148-156,158-165,168-179,197-211 1kaf d1kaff_ F:108-125,148-156,158-166,168-179,197-211 14. d.128.1 Glutamine synthetase/guanido kinase Glutamine synthetase/guanido kinase duplication: common core consists of two beta-alpha-beta2-alpha repeats 2gls d2glsg2 G:103-119,122-131,267-277,291-305,366-385 2gls d2glsc2 C:103-119,122-131,267-277,291-305,366-385 2gls d2glsh2 H:103-119,122-131,267-277,291-305,366-385 2gls d2glsf2 F:103-119,122-131,267-277,291-305,366-385 2gls d2glsl2 L:103-119,122-131,267-277,291-305,366-385 2gls d2glsa2 A:103-119,122-131,267-277,291-305,366-385 2gls d2glse2 E:103-119,122-131,267-277,291-305,366-385 2gls d2glsk2 K:103-119,122-131,267-277,291-305,366-385 2gls d2glsd2 D:103-119,122-131,267-277,291-305,366-385 2gls d2glsi2 I:103-119,122-131,267-277,291-305,366-385 2gls d2glsb2 B:103-119,122-131,267-277,291-305,366-385 2gls d2glsj2 J:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hi2 I:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hl2 L:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hj2 J:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hh2 H:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hk2 K:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hc2 C:103-119,122-131,267-277,291-305,366-385 1f1h d1f1ha2 A:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hb2 B:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hd2 D:103-119,122-131,267-277,291-305,366-385 1f1h d1f1he2 E:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hg2 G:103-119,122-131,267-277,291-305,366-385 1f1h d1f1hf2 F:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsk2 K:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsf2 F:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsa2 A:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsc2 C:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsl2 L:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsj2 J:103-119,122-131,267-277,291-305,366-385 2lgs d2lgse2 E:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsh2 H:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsd2 D:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsg2 G:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsb2 B:103-119,122-131,267-277,291-305,366-385 2lgs d2lgsi2 I:103-119,122-131,267-277,291-305,366-385 1lgr d1lgrd2 D:103-119,122-131,267-277,291-305,366-385 1lgr d1lgrj2 J:103-119,122-131,267-277,291-305,366-385 1lgr d1lgri2 I:103-119,122-131,267-277,291-305,366-385 1lgr d1lgrl2 L:103-119,122-131,267-277,291-305,366-385 1lgr d1lgrk2 K:103-119,122-131,267-277,291-305,366-385 1lgr d1lgrg2 G:103-119,122-131,267-277,291-305,366-385 1lgr d1lgrb2 B:103-119,122-131,267-277,291-305,366-385 1lgr d1lgre2 E:103-119,122-131,267-277,291-305,366-385 1lgr d1lgrh2 H:103-119,122-131,267-277,291-305,366-385 1lgr d1lgrc2 C:103-119,122-131,267-277,291-305,366-385 1lgr d1lgrf2 F:103-119,122-131,267-277,291-305,366-385 1lgr d1lgra2 A:103-119,122-131,267-277,291-305,366-385 1htq d1htqc2 C:103-119,122-131,267-277,291-305,366-385 1htq d1htqw2 W:103-119,122-131,267-277,291-305,366-385 1htq d1htqf2 F:103-119,122-131,267-277,291-305,366-385 1htq d1htqb2 B:103-119,122-131,267-277,291-305,366-385 1htq d1htqu2 U:103-119,122-131,267-277,291-305,366-385 1htq d1htqr2 R:103-119,122-131,267-277,291-305,366-385 1htq d1htqp2 P:103-119,122-131,267-277,291-305,366-385 1htq d1htqe2 E:103-119,122-131,267-277,291-305,366-385 1htq d1htqk2 K:103-119,122-131,267-277,291-305,366-385 1htq d1htqh2 H:103-119,122-131,267-277,291-305,366-385 1htq d1htqj2 J:103-119,122-131,267-277,291-305,366-385 1htq d1htqq2 Q:103-119,122-131,267-277,291-305,366-385 1htq d1htqs2 S:103-119,122-131,267-277,291-305,366-385 1htq d1htqm2 M:103-119,122-131,267-277,291-305,366-385 1htq d1htqg2 G:103-119,122-131,267-277,291-305,366-385 1htq d1htqo2 O:103-119,122-131,267-277,291-305,366-385 1htq d1htql2 L:103-119,122-131,267-277,291-305,366-385 1htq d1htqn2 N:103-119,122-131,267-277,291-305,366-385 1htq d1htqi2 I:103-119,122-131,267-277,291-305,366-385 1htq d1htqv2 V:103-119,122-131,267-277,291-305,366-385 1htq d1htqt2 T:103-119,122-131,267-277,291-305,366-385 1htq d1htqa2 A:103-119,122-131,267-277,291-305,366-385 1htq d1htqd2 D:103-119,122-131,267-277,291-305,366-385 1htq d1htqx2 X:103-119,122-131,267-277,291-305,366-385 1hto d1htop2 P:103-119,122-131,267-277,291-305,366-385 1hto d1htod2 D:103-119,122-131,267-277,291-305,366-385 1hto d1hton2 N:103-119,122-131,267-277,291-305,366-385 1hto d1htov2 V:103-119,122-131,267-277,291-305,366-385 1hto d1htoo2 O:103-119,122-131,267-277,291-305,366-385 1hto d1htoe2 E:103-119,122-131,267-277,291-305,366-385 1hto d1htoa2 A:103-119,122-131,267-277,291-305,366-385 1hto d1htoc2 C:103-119,122-131,267-277,291-305,366-385 1hto d1htoj2 J:103-119,122-131,267-277,291-305,366-385 1hto d1htoh2 H:103-119,122-131,267-277,291-305,366-385 1hto d1htos2 S:103-119,122-131,267-277,291-305,366-385 1hto d1htok2 K:103-119,122-131,267-277,291-305,366-385 1hto d1htor2 R:103-119,122-131,267-277,291-305,366-385 1hto d1htoq2 Q:103-119,122-131,267-277,291-305,366-385 1hto d1htow2 W:103-119,122-131,267-277,291-305,366-385 1hto d1htou2 U:103-119,122-131,267-277,291-305,366-385 1hto d1htog2 G:103-119,122-131,267-277,291-305,366-385 1hto d1htoi2 I:103-119,122-131,267-277,291-305,366-385 1hto d1htot2 T:103-119,122-131,267-277,291-305,366-385 1hto d1htom2 M:103-119,122-131,267-277,291-305,366-385 1hto d1htof2 F:103-119,122-131,267-277,291-305,366-385 1hto d1htox2 X:103-119,122-131,267-277,291-305,366-385 1hto d1htob2 B:103-119,122-131,267-277,291-305,366-385 1hto d1htol2 L:103-119,122-131,267-277,291-305,366-385 2bvc d2bvcc2 C:107-123,126-135,274-284,299-313,375-394 2bvc d2bvcd2 D:107-123,126-135,274-284,299-313,375-394 2bvc d2bvcf2 F:107-123,126-135,274-284,299-313,375-394 2bvc d2bvca2 A:107-123,126-135,274-284,299-313,375-394 2bvc d2bvce2 E:107-123,126-135,274-284,299-313,375-394 2bvc d2bvcb2 B:107-123,126-135,274-284,299-313,375-394 1fpy d1fpyh2 H:103-119,122-131,266-277,291-305,366-385 1fpy d1fpye2 E:103-119,122-131,266-277,291-305,366-385 1fpy d1fpyb2 B:103-119,122-131,266-277,291-305,366-385 1fpy d1fpyi2 I:103-119,122-131,266-277,291-305,366-385 1fpy d1fpya2 A:103-119,122-131,266-277,291-305,366-385 1fpy d1fpyj2 J:103-119,122-131,266-277,291-305,366-385 1fpy d1fpyc2 C:103-119,122-131,266-277,291-305,366-385 1fpy d1fpyg2 G:103-119,122-131,266-277,291-305,366-385 1fpy d1fpyd2 D:103-119,122-131,266-277,291-305,366-385 1fpy d1fpyl2 L:103-119,122-131,266-277,291-305,366-385 1fpy d1fpyf2 F:103-119,122-131,266-277,291-305,366-385 1fpy d1fpyk2 K:103-119,122-131,266-277,291-305,366-385 1f52 d1f52k2 K:103-119,122-131,266-277,291-305,366-385 1f52 d1f52f2 F:103-119,122-131,266-277,291-305,366-385 1f52 d1f52h2 H:103-119,122-131,266-277,291-305,366-385 1f52 d1f52g2 G:103-119,122-131,266-277,291-305,366-385 1f52 d1f52a2 A:103-119,122-131,266-277,291-305,366-385 1f52 d1f52l2 L:103-119,122-131,266-277,291-305,366-385 1f52 d1f52d2 D:103-119,122-131,266-277,291-305,366-385 1f52 d1f52j2 J:103-119,122-131,266-277,291-305,366-385 1f52 d1f52e2 E:103-119,122-131,266-277,291-305,366-385 1f52 d1f52i2 I:103-119,122-131,266-277,291-305,366-385 1f52 d1f52b2 B:103-119,122-131,266-277,291-305,366-385 1f52 d1f52c2 C:103-119,122-131,266-277,291-305,366-385 16. d.248.1 Coproporphyrinogen III oxidase Coproporphyrinogen III oxidase alpha-beta(6)-alpha(2)-beta-alpha(n); 3 layers alpha/beta/alpha; antiparallel sheet: order 1234567 1tk1 d1tk1a_ A:11-36,128-140,148-159,163-183,220-249 3dwr d3dwrb1 B:1-28,104-116,122-134,138-157,195-224 3dws d3dwsa1 A:1-28,104-117,121-134,138-157,195-224 1txn d1txna_ A:11-36,128-142,144-159,163-183,220-249 1vju d1vjua_ A:9-36,112-125,129-142,146-165,203-232 3dwr d3dwra1 A:1-28,104-117,121-134,138-157,195-224 2qt8 d2qt8a1 A:1-28,104-117,121-134,138-157,195-224 1tkl d1tklb_ B:11-36,128-142,144-159,163-183,220-249 1txn d1txnb_ B:11-36,128-142,144-159,163-183,220-249 1tkl d1tkla_ A:11-36,128-142,144-159,163-183,220-249 1tlb d1tlbu_ U:9-36,128-142,144-159,163-183,220-249 1vju d1vjub_ B:6-36,112-125,129-142,146-165,203-232 2qt8 d2qt8b1 B:-2-28,104-117,121-134,138-157,195-224 3dws d3dwsb1 B:-2-28,104-117,121-134,138-157,195-224 1tlb d1tlbd_ D:6-36,128-142,144-159,163-183,220-249 1tlb d1tlba_ A:6-36,128-142,144-159,163-183,220-249 1tlb d1tlbs_ S:6-36,128-142,144-159,163-183,220-249 1tlb d1tlbw_ W:6-36,128-142,144-159,163-183,220-249 1tlb d1tlbq_ Q:6-36,128-142,144-159,163-183,220-249 18. e.58.1 Viral ssDNA binding protein Viral ssDNA binding protein 2 domains; d1: [large alpha+beta domain subdivided into the 'head', 'neck' and 'shoulders' regions; in the 'neck', there is an OB-fold interrupted by large insertions]; d2: [all-alpha, 6 helices; orthogonal array] 1urj d1urjb_ B:309-334,384-391,406-412,666-694,702-719 1urj d1urja_ A:308-334,384-391,406-412,666-694,702-719 19. d.258.1 Chorismate synthase, AroC Chorismate synthase, AroC duplication: consists of two DCoH-like beta(2)-alpha-beta(2)-alpha structural repeats; 3 layers, beta/alpha/beta 1q1l d1q1la_ A:135-157,158-168,223-234,248-261,351-377 1q1l d1q1ld_ D:135-157,158-168,223-234,248-261,351-377 1q1l d1q1lb_ B:135-157,158-168,223-234,248-261,351-377 1q1l d1q1lc_ C:135-157,158-168,223-234,248-261,353-377 1umf d1umfc_ C:123-147,147-158,201-211,228-241,326-355 1um0 d1um0c_ C:123-147,147-158,201-211,228-241,326-355 1um0 d1um0b_ B:122-147,147-158,199-211,228-241,326-355 1um0 d1um0a_ A:122-147,147-158,199-211,228-241,326-355 1umf d1umfa_ A:123-147,147-158,199-211,228-241,326-355 1umf d1umfb_ B:122-147,147-158,199-211,228-241,326-355 1umf d1umfd_ D:124-147,147-158,199-211,228-241,326-355 1um0 d1um0d_ D:124-147,147-158,199-211,228-241,326-355 1r52 d1r52c_ C:128-148,149-159,215-225,237-250,341-369 1r52 d1r52b_ B:128-148,149-159,215-225,237-250,341-369 1r52 d1r52d_ D:128-148,149-159,215-225,237-250,341-369 1r52 d1r52a_ A:128-148,149-159,215-225,237-250,341-369 1r53 d1r53a_ A:128-148,149-159,215-225,237-250,341-371 1sq1 d1sq1a_ A:126-146,147-157,202-213,225-238,323-352 21. a.119.1 Lipoxigenase Lipoxigenase multihelical ! large nearly all-alpha domain 1fgq d1fgqa1 A:580-589,590-594,600-604,608-634,671-697 3bnd d3bnda1 A:580-589,590-594,600-604,608-634,671-697 1y4k d1y4ka1 A:580-589,590-594,600-604,608-634,671-697 1fgt d1fgta1 A:580-589,590-594,600-604,608-634,671-697 1fgm d1fgma1 A:580-589,590-594,600-604,608-634,671-697 1fgo d1fgoa1 A:580-589,590-594,600-604,608-634,671-697 3bne d3bnea1 A:580-589,590-594,600-604,608-634,671-697 3bnc d3bnca1 A:580-589,590-594,600-604,608-634,671-697 1fgr d1fgra1 A:580-589,590-594,600-604,608-634,671-697 2sbl d2sbla1 A:580-589,590-594,600-604,608-634,671-697 2sbl d2sblb1 B:580-589,590-594,600-604,608-634,671-697 1yge d1ygea1 A:580-589,590-594,600-604,608-634,671-697 3bnb d3bnba1 A:580-589,590-594,600-604,608-634,671-697 1f8n d1f8na1 A:580-589,590-594,600-604,608-634,671-697 1rov d1rova1 A:599-608,609-614,619-623,627-653,690-716 1ik3 d1ik3a1 A:599-608,609-613,619-623,627-653,690-716 1lnh d1lnha1 A:599-608,609-613,619-623,627-653,690-716 1rrl d1rrla1 A:599-608,609-613,619-623,627-653,690-716 1rrh d1rrha1 A:599-608,609-613,619-623,627-653,690-716 1n8q d1n8qa1 A:599-608,609-613,619-623,627-653,690-716 1jnq d1jnqa1 A:599-608,609-613,619-623,627-653,690-716 1no3 d1no3a1 A:599-608,609-613,619-623,627-653,690-716 1hu9 d1hu9a1 A:599-608,609-613,619-623,627-653,690-716 1rrl d1rrlb1 B:599-608,609-613,619-623,627-653,690-723 25. d.282.1 SSo0622-like the dimer, formed in the crystals, is a probable biological unit ! SSo0622-like alpha(2)-beta(2)-alpha-beta-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel beta-sheet: order 21354; strands 1,3 and 5 and the C-terminal helix are longer than other secondary structures 1tlj d1tlja_ A:27-42,43-52,93-109,110-125,162-192 1tlj d1tljb_ B:27-42,43-52,93-109,110-125,162-192