1. d.92.1 Metalloproteases ("zincins"), catalytic domain
Zincin-like contains mixed beta sheet with connection over free side of the sheet
2ejq d2ejqb1 B:25-31,46-51,66-71,84-106,108-125
1k9x d1k9xc_ C:230-234,238-244,248-254,259-280,294-312
1k9x d1k9xa_ A:230-234,238-244,248-254,259-280,294-312
1ka2 d1ka2a_ A:230-234,238-244,248-254,259-280,294-312
1ka4 d1ka4a_ A:230-234,238-244,248-254,259-280,294-312
1k9x d1k9xb_ B:230-234,239-244,248-253,259-280,294-312
3b7s d3b7sa3 A:255-261,268-273,274-279,289-306,313-334
2r59 d2r59a3 A:255-261,268-273,274-279,289-306,313-334
1h19 d1h19a3 A:255-261,268-273,274-279,289-306,313-334
3b7u d3b7ux3 X:255-261,268-273,274-279,289-306,313-334
1k9x d1k9xd_ D:230-234,239-244,248-253,259-280,294-312
1hs6 d1hs6a3 A:255-261,268-273,274-279,287-306,313-334
3chs d3chsa3 A:255-261,268-273,274-279,289-306,313-334
1sqm d1sqma3 A:255-261,268-273,274-279,289-306,313-334
3cho d3choa3 A:255-261,268-273,274-279,289-306,313-334
3chr d3chra3 A:255-261,268-273,274-279,289-306,313-334
3chq d3chqa3 A:255-261,268-273,274-279,289-306,313-334
3b7t d3b7ta3 A:255-261,268-273,274-279,287-306,313-334
3chp d3chpa3 A:255-261,268-273,274-279,289-306,313-334
1t3c d1t3ca_ A:146-153,159-164,180-186,204-222,222-231
1t3a d1t3aa_ A:146-153,159-164,180-186,204-222,222-231
1t3a d1t3ab_ B:146-153,159-164,180-186,204-222,222-231
1t3c d1t3cb_ B:146-153,159-164,180-186,204-222,222-231
3d3x d3d3xb1 B:146-153,159-164,180-186,204-222,222-231
3d3x d3d3xa1 A:146-153,159-164,180-186,204-222,222-231
1bqb d1bqba_ A:94-102,113-119,120-126,138-156,160-180
1bm6 d1bm6a_ A:141-148,164-171,175-182,194-209,217-225
1pwq d1pwqa2 A:627-633,656-662,663-670,679-702,732-746
1pwu d1pwua2 A:627-633,656-662,663-670,679-702,732-746
1pww d1pwwb2 B:627-633,655-662,663-670,679-702,732-746
1yqy d1yqya1 A:627-633,656-662,663-670,679-702,732-746
1jky d1jkya2 A:627-633,656-662,663-670,679-701,732-746
1pwu d1pwub2 B:627-633,656-662,663-670,679-702,732-746
1pww d1pwwa2 A:627-633,655-662,663-670,679-702,732-746
1pwv d1pwva2 A:627-633,655-662,663-670,679-702,732-746
1pwv d1pwvb2 B:627-633,655-662,663-670,679-702,732-746
2ilp d2ilpb1 B:150-157,163-167,183-188,216-234,259-267
2ima d2imab1 B:150-157,163-167,183-188,216-234,259-267
1zxv d1zxvb2 B:627-633,656-662,663-670,679-702,732-746
1pwp d1pwpa2 A:627-633,656-662,663-670,679-702,732-746
1pwp d1pwpb2 B:627-633,656-662,663-670,679-702,732-746
1j7n d1j7na2 A:627-633,656-662,663-670,679-702,732-746
2ima d2imaa1 A:150-157,163-167,183-188,216-234,259-267
1zxv d1zxva2 A:627-633,656-662,663-670,679-702,732-746
2ilp d2ilpa1 A:150-157,163-167,183-188,216-234,259-267
1j7n d1j7nb2 B:627-633,656-662,663-670,679-701,732-746
1r1j d1r1ja_ A:475-480,543-548,549-555,569-590,639-669
1r1h d1r1ha_ A:475-480,543-548,549-555,569-590,639-669
2qpj d2qpja1 A:475-480,543-548,549-555,569-590,639-669
1dmt d1dmta_ A:475-480,543-548,549-555,569-590,639-669
1r1i d1r1ia_ A:475-480,543-548,549-555,569-590,639-669
1y8j d1y8ja1 A:475-480,543-548,549-555,569-590,639-669
1i1i d1i1ip_ P:405-417,426-438,440-452,465-486,498-516
2. c.56.3 Peptidyl-tRNA hydrolase-like
Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
2pth d2ptha_ A:87-95,101-107,127-136,154-179,179-193
1rym d1ryma_ A:87-95,98-107,129-137,154-179,179-188
3. c.52.4 TBP-interacting protein-like contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
2czr d2czra1 A:63-69,75-79,80-85,85-101,123-134
4. c.77.1 Isocitrate/Isopropylmalate dehydrogenase-like the constituent families form similar dimers !
Isocitrate/Isopropylmalate dehydrogenase-like consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
1lwd d1lwdb_ B:69-75,290-297,302-307,328-348,349-370
1lwd d1lwda_ A:69-75,290-297,302-307,328-348,349-370
5. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1ng3 d1ng3a1 A:196-201,309-315,320-327,330-348,352-360
1ng4 d1ng4a1 A:196-201,309-315,320-327,330-348,352-360
1ng3 d1ng3b1 B:196-201,310-315,320-326,330-348,352-360
1ng4 d1ng4b1 B:196-201,310-315,320-326,330-348,352-360
1ryi d1ryid1 D:196-201,309-315,320-327,330-348,352-360
1ryi d1ryic1 C:196-201,309-315,320-327,330-348,352-360
1ryi d1ryib1 B:196-201,310-315,320-326,330-348,352-360
1ryi d1ryia1 A:196-201,310-315,320-326,330-348,352-360
1jnr d1jnrc2 C:16-25,188-197,200-208,477-503,564-592
1jnz d1jnzc2 C:2016-2025,2188-2197,2200-2208,2477-2503,2564-2592
1jnz d1jnza2 A:16-25,188-197,200-208,477-503,564-592
1jnr d1jnra2 A:16-25,188-197,200-208,477-503,564-592
6. d.112.1 Phoshotransferase/anion transport protein
Phoshotransferase/anion transport protein beta-alpha(2)-beta(3)-alpha(3); 3 layers, alpha/beta/alpha; mixed sheet: order 1342; loop crossing
1a3a d1a3ac_ C:60-65,76-84,99-107,110-123,136-147
1j6t d1j6ta_ A:60-65,76-84,99-107,110-123,136-147
1a3a d1a3ad_ D:60-65,76-84,99-107,110-123,136-147
1a3a d1a3aa_ A:60-65,77-84,99-106,109-125,136-147
1xiz d1xizb_ B:61-67,75-85,102-110,111-129,139-155
1xiz d1xiza_ A:61-67,75-85,102-110,111-129,139-153
1a6j d1a6ja_ A:68-78,83-90,105-114,114-134,145-155
1a3a d1a3ab_ B:60-65,77-84,99-106,109-123,136-145
1a6j d1a6jb_ B:68-78,83-91,105-115,114-134,145-155
7. d.328.1 CorA soluble domain-like
CorA soluble domain-like beta(2)-alpha-beta-alpha(2)-beta(4)-alpha(3); 3 layers: a/b/a; mixed beta-sheet, order 2137654; strands 3 and 7 are parallel
2bbh d2bbha1 A:59-66,122-133,134-141,145-157,165-199
2bbj d2bbja1 A:58-66,122-133,134-141,145-157,165-203
2bbj d2bbjf1 F:58-66,122-133,134-141,145-157,165-203
2bbj d2bbje1 E:58-66,121-133,134-141,145-157,165-203
2hn2 d2hn2b1 B:2058-2066,2119-2133,2134-2141,2145-2157,2165-2203
2hn2 d2hn2a1 A:1058-1066,1119-1133,1134-1141,1145-1157,1165-1203
2hn2 d2hn2d1 D:4058-4066,4119-4133,4134-4141,4145-4157,4165-4203
2hn2 d2hn2e1 E:5058-5066,5119-5133,5134-5141,5145-5157,5165-5203
2bbj d2bbjb1 B:58-66,121-133,134-141,145-157,165-203
2bbj d2bbjd1 D:59-66,122-133,134-141,145-157,165-203
2hn2 d2hn2c1 C:3058-3066,3119-3133,3134-3141,3145-3157,3165-3203
2iub d2iubh1 H:58-66,119-133,134-141,145-157,165-203
2iub d2iubg1 G:58-66,119-133,134-141,145-157,165-203
2iub d2iubb1 B:58-66,119-133,134-141,145-157,165-203
2iub d2iubj1 J:58-66,119-133,134-141,145-157,165-203
2iub d2iubc1 C:58-66,119-133,134-141,145-157,165-203
2iub d2iuba1 A:58-66,119-133,134-141,145-157,165-203
2iub d2iubf1 F:58-66,119-133,134-141,145-157,165-203
2iub d2iubd1 D:58-66,119-133,134-141,145-157,165-203
2iub d2iube1 E:58-66,119-133,134-141,145-157,165-203
2iub d2iubi1 I:58-66,119-133,134-141,145-157,165-203
8. d.319.1 TTHA1528-like
TTHA1528-like beta-alpha-beta(3)-alpha-beta-alpha(2)-beta; 3 layers: a/b/a; mixed beta-sheet, order: 143256, parallel strands' pairs are 1-4 and 2-5
1wna d1wnaa1 A:1-8,45-53,54-61,95-105,106-118
1wn9 d1wn9a1 A:1-8,45-53,54-61,95-105,106-118
9. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1dg3 d1dg3a2 A:37-45,76-85,91-100,108-123,289-307
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 525 (enumeration index: query494) of S5
1z1w A:217-224,230-235,236-241,252-277,280-304
3if9 C:196-201,310-315,320-326,330-348,352-360
3if9 B:196-201,310-315,320-326,330-348,352-360
3if9 D:196-201,310-315,320-326,330-348,352-360
3if9 A:196-201,309-315,320-327,330-348,352-360
1zl6 A:146-153,159-164,180-186,204-222,222-231
1zl6 B:146-153,159-164,180-186,204-222,222-231
3fuh A:255-261,268-273,274-279,289-306,313-334
2qn0 A:155-162,168-172,189-194,222-240,266-274
2bra B:212-217,375-382,383-391,403-426,428-446
2bra A:212-217,375-382,383-391,403-426,428-446
3zuk B:393-398,453-458,459-465,486-500,553-580
3zuk A:393-398,453-458,459-465,479-497,553-580
1zl5 A:146-153,159-164,180-186,204-222,222-231
1zl5 B:146-153,159-164,180-186,204-222,222-231
3fh7 A:255-261,268-273,274-279,289-306,313-334
2h1n A:314-319,326-334,335-344,347-370,379-398
2h1n B:314-319,326-334,335-344,347-370,379-398
3nqx A:304-310,317-322,323-328,339-357,361-385
3fh8 A:255-261,268-273,274-279,289-306,313-334
3nwi C:41-48,106-114,116-122,126-139,144-177
3nwi A:41-48,106-114,116-122,126-139,144-177
3nwi B:41-48,106-114,116-122,126-139,144-177
3nwi E:41-48,106-114,116-122,126-139,144-177
3nwi D:41-48,106-114,116-122,126-139,144-177
3cia B:284-290,297-302,303-308,316-335,342-363
3cia D:284-290,297-302,303-308,316-335,342-363
3cia A:284-290,297-302,303-308,316-335,342-363
3cia C:284-290,297-302,303-308,316-335,342-363
3deb A:155-162,168-172,189-194,222-240,266-274
3do1 A:97-105,112-117,118-123,136-154,158-181
3qiy A:150-157,163-167,183-188,216-234,259-267
3ahm A:314-319,326-334,335-344,347-371,379-395
3ahm B:314-319,326-334,335-344,347-371,379-395
2oqt D:63-68,78-86,98-105,107-126,137-151
2oqt A:63-68,77-86,98-106,107-126,137-151
2oqt C:63-68,78-85,98-105,107-126,137-152
2oqt B:63-68,77-85,98-106,107-126,137-150
3ahn B:314-319,326-334,335-344,347-371,379-395
3ahn A:314-319,326-334,335-344,347-371,379-395
1zkw A:146-153,159-164,180-186,204-222,222-231
1zkw B:146-153,159-164,180-186,204-222,222-231
3fu5 A:255-261,268-273,274-279,289-306,313-334
3nvo A:42-48,106-115,116-122,126-139,144-177
3nvo B:41-48,106-115,116-122,126-139,144-181
3fh5 A:255-261,268-273,274-279,289-306,313-334
1zkx B:146-153,159-164,180-186,204-222,222-231
1zkx A:146-153,159-164,180-186,204-222,222-231
3mdj B:304-311,317-322,323-328,340-364,368-392
3mdj A:304-311,317-322,323-328,340-364,368-392
3mdj C:305-311,317-322,323-328,340-365,368-392
2c4c B:212-217,375-382,383-391,403-426,428-446
2c4c A:212-217,375-382,383-391,403-426,428-446
3aho A:314-319,326-334,335-344,347-370,379-395
3aho B:314-319,326-334,335-344,347-371,379-395
3awi D:455-460,575-580,608-614,618-636,642-650
3awi C:455-460,575-580,608-614,618-636,642-650
3awi B:455-460,575-580,608-614,618-636,642-650
3awi E:455-460,575-580,608-614,618-636,642-650
3awi A:455-460,575-580,608-614,618-636,642-650
3awi F:455-460,575-580,608-614,618-636,642-650
1z5h A:217-224,230-235,236-241,252-277,280-304
1z5h B:217-224,230-235,236-241,252-277,280-304
3bjv A:63-68,77-85,98-106,107-126,137-151
3hq2 B:226-232,236-240,244-250,255-276,290-309
3hq2 A:226-230,235-240,244-249,255-276,290-309
2b8w A:37-45,77-85,91-99,108-123,289-307
3o0y C:386-391,401-408,413-420,428-441,466-485
3o0y A:386-391,401-408,413-420,428-441,466-485
2a8a A:152-159,165-170,190-196,220-238,238-247
3kk0 A:89-97,103-109,130-137,161-180,180-189
3hoa A:237-243,247-252,254-261,266-287,301-319
3hoa B:237-242,245-252,254-261,266-287,301-319
3dda A:150-157,163-167,183-188,216-234,259-267
3dwb A:500-505,567-572,573-579,593-611,660-690
3fuj A:255-261,268-273,274-279,289-306,313-334
3fun A:255-261,268-273,274-279,289-306,313-334
3dwc C:227-232,235-242,243-250,255-276,291-309
3dwc B:227-231,236-242,243-249,255-276,291-309
3dwc D:227-231,235-242,243-250,255-276,291-309
3dwc A:227-233,237-242,243-250,255-276,291-309
2hn1 A:63-71,123-135,136-143,147-159,166-204
2bc9 A:36-45,77-85,90-99,108-123,289-308
2a0j A:62-71,75-83,98-107,109-127,138-147
3nqz B:304-310,317-322,323-328,339-357,361-385
3puu A:248-256,261-266,267-273,284-309,315-336
3b2p A:248-256,261-266,267-273,284-309,315-336
3ffz A:147-154,160-165,181-187,205-223,223-232
3ffz B:147-154,160-165,181-187,205-223,223-232
3qix A:150-157,163-167,183-188,216-234,259-267
3t8v A:447-455,460-465,466-472,483-508,514-535
2oq3 A:62-67,76-86,98-106,107-125,136-147
2o3e A:405-417,426-438,440-452,465-486,498-516
3ihm B:137-142,280-285,287-293,305-326,329-341
3ihm A:137-142,280-285,287-293,305-326,329-341
2cmv B:68-74,290-297,302-307,328-348,349-370
3qiz A:150-157,163-167,183-188,216-234,259-267
2gtq A:244-252,257-262,263-269,280-305,311-333
2few A:60-65,76-84,99-107,110-123,136-147
3fts A:255-261,268-273,274-279,289-306,313-334
3ftz A:255-261,268-273,274-279,289-306,313-334
3b37 A:248-256,261-266,267-273,284-309,315-336
3ps9 A:455-460,575-580,608-614,618-636,642-650
3fu6 A:255-261,268-273,274-279,289-306,313-334
3ful A:255-261,268-273,274-279,289-306,313-334
3q44 A:447-455,460-465,466-472,483-508,514-535
3sks A:314-319,326-334,335-344,347-370,379-398
2d4h A:37-45,77-85,91-99,110-123,289-307
2d4h B:36-45,77-85,90-99,110-123,289-307
2g7p B:149-154,162-166,182-187,215-233,258-266
2bry A:212-217,375-382,383-391,403-426,428-446
2bry B:212-217,375-382,384-391,403-426,428-446
3ebg A:447-455,460-465,466-472,483-508,514-535
1y79 1:404-416,423-435,436-448,460-480,493-510
2yd0 A:304-311,317-322,323-328,340-365,371-392
3fud A:255-261,268-273,274-279,289-306,313-334
3fie B:152-159,165-170,190-196,220-238,238-247
3fie A:152-159,165-170,190-196,220-238,238-247
3qnf B:304-311,317-322,323-328,340-365,368-392
3qnf A:304-311,317-322,323-328,340-365,368-392
3qj0 A:150-157,163-167,183-188,216-234,259-267
2h1j A:314-319,326-334,335-344,347-370,379-395
2h1j B:314-319,326-334,335-344,347-370,379-395
3ck6 D:28-34,91-101,102-108,112-125,130-160
3ck6 A:28-34,91-101,102-108,112-125,130-160
3ck6 E:28-35,91-101,102-109,112-125,130-160
3ck6 B:28-35,91-101,102-109,112-125,130-160
3ck6 C:28-35,91-101,102-109,112-125,130-160
3gyx G:18-27,205-214,217-226,503-526,587-615
3lf6 A:69-75,83-93,110-118,119-137,147-160
3lf6 B:69-75,83-93,110-118,119-137,147-160
3fue A:255-261,268-273,274-279,289-306,313-334
3p2j A:89-97,100-109,130-138,161-180,180-189
3fui A:255-261,268-273,274-279,289-306,313-334
2g7k B:149-154,162-166,182-187,215-233,258-266
3ftv A:255-261,268-273,274-279,289-306,313-334
3fii A:152-159,165-170,190-196,220-238,238-247
3t43 B:45-51,60-67,86-93,95-113,123-139
3t43 A:46-51,60-67,86-93,95-113,123-139
2a97 A:152-159,165-170,190-196,220-238,238-247
2a97 B:152-159,165-170,190-196,220-238,238-247
3ebi A:447-455,460-465,466-472,483-508,514-535
2xq0 A:300-306,313-318,319-324,334-351,358-379
2g7q B:149-156,162-166,182-187,215-233,258-266
1zn3 A:146-153,159-164,180-186,204-222,222-231
1zn3 B:146-153,159-164,180-186,204-222,222-231
3fu0 A:255-261,268-273,274-279,289-306,313-334
3ftx A:255-261,268-273,274-279,289-306,313-334
3fty A:255-261,268-273,274-279,289-306,313-334
3kjz A:89-97,100-109,130-138,161-180,180-189
1wgz B:237-242,247-252,254-260,266-287,301-319
1wgz C:237-243,246-252,254-261,266-287,301-319
1wgz A:237-243,246-252,254-261,266-287,301-319
3dbk A:99-105,112-117,118-123,134-152,154-180
3nqy B:304-310,317-322,323-328,339-357,361-385
3djd A:211-216,345-350,355-361,372-383,386-394
3djd B:211-216,345-350,355-361,372-383,386-394
1v5b B:67-74,262-268,272-278,292-309,310-328
3oxp A:61-66,75-85,98-106,107-125,136-147
3oxp B:61-66,75-85,98-106,107-125,136-147
3ce2 A:358-363,371-376,382-387,391-415,423-446
3do0 A:97-105,112-117,118-123,136-154,158-181
2yb9 A:475-480,543-548,549-555,569-590,639-669
3fuk A:255-261,268-273,274-279,289-306,313-334
2xpz A:300-306,313-318,319-324,332-351,358-379
3fhe A:255-261,268-273,274-279,289-306,313-334
3q7j A:217-224,230-235,236-241,252-277,280-304
3q7j B:217-224,230-235,236-241,252-277,280-304
3ftu A:255-261,268-273,274-279,289-306,313-334
2fjb C:2016-2025,2188-2197,2200-2208,2477-2503,2564-2592
2fjb A:16-25,188-197,200-208,477-503,564-592
2fja C:2016-2025,2188-2197,2200-2208,2477-2503,2564-2592
2fja A:16-25,188-197,200-208,477-503,564-592
2fje C:2016-2025,2188-2197,2200-2208,2477-2503,2564-2592
2fje A:16-25,188-197,200-208,477-503,564-592
2fjd C:2016-2025,2188-2197,2200-2208,2477-2503,2564-2592
2fjd A:16-25,188-197,200-208,477-503,564-592