1. a.111.1 Acid phosphatase/Vanadium-dependent haloperoxidase
Acid phosphatase/Vanadium-dependent haloperoxidase multihelical; core: 5-helical bundle; binds cofactor at the beginning of third helix
1vng d1vnga_ A:21-41,46-70,97-115,299-316,324-357
1vnf d1vnfa_ A:21-41,46-70,97-115,299-316,324-357
1vni d1vnia_ A:21-41,46-70,97-115,299-316,324-357
1vnc d1vnca_ A:21-41,46-70,97-115,299-316,324-357
1vnh d1vnha_ A:21-41,46-70,97-115,299-316,324-357
1idu d1idua_ A:21-41,46-70,97-115,299-316,324-357
1vne d1vnea_ A:21-41,46-70,97-115,299-316,324-357
1vns d1vnsa_ A:21-41,46-70,97-115,299-316,324-357
1idq d1idqa_ A:21-41,46-70,97-115,299-316,324-357
2. a.211.1 HD-domain/PDEase-like
HD-domain/PDEase-like multihelical; consists of two different alpha-helical bundles
1vqr d1vqra_ A:38-50,49-62,82-92,109-133,132-161
1vqr d1vqrb_ B:38-50,49-62,82-92,109-133,132-161
1vqr d1vqrc_ C:38-50,49-62,82-92,109-133,132-161
1vqr d1vqrd_ D:38-50,49-62,82-92,109-133,132-161
3. e.44.1 2-methylcitrate dehydratase PrpD
2-methylcitrate dehydratase PrpD consists of an all-alpha and alpha+beta domains
1szq d1szqb_ B:13-26,84-100,170-188,190-205,218-242
1szq d1szqa_ A:13-26,84-100,170-188,190-205,218-242
4. f.49.1 Proton glutamate symport protein
Proton glutamate symport protein multihelical membrane protein; partial structural duplication in the C-terminal region; oligomeric state: trimer
2nwx d2nwxb1 B:57-73,265-276,277-293,295-307,389-416
2nwx d2nwxa1 A:57-73,265-276,277-293,295-307,389-416
2nwx d2nwxc1 C:57-73,265-276,277-293,295-307,389-416
2nww d2nwwc1 C:43-70,265-276,277-293,295-311,389-416
1xfh d1xfha_ A:42-70,265-276,277-293,295-311,389-416
1xfh d1xfhc_ C:42-70,265-276,277-293,295-311,389-416
2nww d2nwwa1 A:42-70,265-276,277-293,295-311,389-416
2nww d2nwwb1 B:42-70,265-276,277-293,295-311,389-416
2nwx d2nwxb1 B:57-73,257-266,277-293,295-307,389-416
2nwx d2nwxa1 A:57-73,257-266,277-293,295-307,389-416
2nwx d2nwxc1 C:57-73,257-266,277-293,295-307,389-416
1xfh d1xfhb_ B:42-70,265-276,277-293,301-311,389-416
1xfh d1xfhc_ C:42-70,257-266,277-293,295-311,389-416
1xfh d1xfha_ A:42-70,257-266,277-293,295-311,389-416
2nww d2nwwc1 C:43-70,257-266,277-293,295-311,389-416
2nww d2nwwa1 A:42-70,257-266,277-293,295-311,389-416
1xfh d1xfhb_ B:42-70,257-266,277-293,301-311,389-416
2nww d2nwwb1 B:42-70,257-266,277-293,295-311,389-416
5. a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases core: 4 helices; bundle; one loop crosses over one side of the bundle
1woy d1woya1 A:337-369,378-398,399-422,430-457,474-481
2d5b d2d5ba1 A:337-369,378-398,399-422,430-457,474-481
2d54 d2d54a1 A:337-369,378-398,399-422,430-457,474-481
1a8h d1a8ha1 A:337-369,378-398,399-422,430-457,474-481
1f4l d1f4la1 A:373-397,414-435,436-459,469-492,511-518
1pfu d1pfua1 A:373-397,414-435,436-459,469-492,511-518
1pg0 d1pg0a1 A:373-397,414-435,436-459,469-492,511-518
1pfv d1pfva1 A:373-397,414-435,436-459,466-492,511-518
1pfy d1pfya1 A:373-397,414-435,436-459,466-492,511-518
1qqt d1qqta1 A:373-397,414-435,436-459,469-492,511-518
1p7p d1p7pa1 A:373-397,414-435,436-459,466-492,511-518
1pfw d1pfwa1 A:373-397,414-435,436-459,466-492,511-518
1pg2 d1pg2a1 A:373-397,414-435,436-459,469-492,511-518
6. a.126.1 Serum albumin-like
Serum albumin-like multihelical; one domain consists of two similar disulfide-linked subdomains
1ao6 d1ao6b2 B:207-224,304-313,322-339,342-363,365-399
1bm0 d1bm0b2 B:207-224,304-313,322-339,342-363,365-399
1h9z d1h9za2 A:207-224,304-313,322-339,342-363,365-399
1gni d1gnia2 A:207-224,304-313,322-339,342-363,365-399
1o9x d1o9xa2 A:207-224,304-313,322-339,342-363,365-399
1e7e d1e7ea2 A:207-224,304-312,322-339,342-363,365-399
1e7g d1e7ga2 A:207-224,304-312,322-339,342-363,365-399
1bke d1bkea2 A:207-224,304-312,322-339,342-363,365-399
1e7c d1e7ca2 A:207-224,304-312,322-339,342-363,365-399
1e7i d1e7ia2 A:207-224,304-312,322-339,342-363,365-399
1bj5 d1bj5a2 A:207-224,304-312,322-339,342-363,365-399
7. a.115.1 A virus capsid protein alpha-helical domain this domain is interrupted by a jelly-roll beta-sandwich domain !
A virus capsid protein alpha-helical domain multihelical; three-helical bundle in the core is surrounded by non-conserved helices
1uf2 d1uf2c1 C:2-24,56-75,97-105,131-142,393-418
1uf2 d1uf2r1 R:2-24,56-75,97-105,131-142,393-418
1uf2 d1uf2p1 P:2-24,56-75,97-105,131-142,393-418
1uf2 d1uf2i1 I:2-24,56-75,97-105,131-142,393-418
1uf2 d1uf2d1 D:2-24,56-75,97-105,131-142,393-418
1uf2 d1uf2g1 G:2-24,56-75,97-105,131-142,393-418
1uf2 d1uf2s1 S:2-24,56-75,97-105,131-142,393-418
1uf2 d1uf2t1 T:2-24,56-75,97-105,131-142,393-418
1uf2 d1uf2e1 E:2-24,56-75,97-105,131-142,393-418
1uf2 d1uf2f1 F:2-24,56-75,97-104,131-142,393-418
1uf2 d1uf2h1 H:2-24,56-75,97-104,131-142,393-418
1uf2 d1uf2q1 Q:2-24,56-75,97-104,131-142,393-418
1uf2 d1uf2j1 J:2-24,56-75,97-104,131-142,393-418
8. a.74.1 Cyclin-like duplication: consists of two domains of this fold !
Cyclin-like core: 5 helices; one helix is surrounded by the others
1g3n d1g3nc1 C:47-66,68-87,89-109,168-187,193-206
1g3n d1g3ng1 G:47-66,68-87,89-109,168-187,193-206
2euf d2eufa1 A:48-67,69-88,90-110,169-188,194-211
2f2c d2f2ca1 A:48-67,69-88,90-110,169-188,194-211
1jow d1jowa1 A:48-67,69-88,90-111,169-188,194-211
1xo2 d1xo2a1 A:48-67,69-88,90-111,169-188,194-211
1ol1 d1ol1b1 B:207-226,228-247,249-269,326-344,351-369
3ej1 d3ej1d1 D:207-226,228-247,249-269,326-344,351-369
1ogu d1ogud1 D:207-226,228-247,249-269,326-344,351-369
3bhv d3bhvd1 D:207-226,228-247,249-269,326-344,351-369
3bhu d3bhud1 D:207-226,228-246,249-269,326-344,351-369
3bht d3bhtd1 D:207-226,228-246,249-269,326-344,351-369
2iw8 d2iw8d1 D:207-226,228-247,249-269,326-344,351-369
3eid d3eidd1 D:207-226,228-247,249-269,326-344,351-369
2iw6 d2iw6d1 D:207-226,228-247,249-269,326-344,351-369
1h1q d1h1qd1 D:207-226,228-246,249-269,326-344,351-369
3dog d3dogd1 D:207-226,228-246,249-269,326-344,351-369
1bu2 d1bu2a1 A:48-67,69-88,90-111,169-188,194-211
9. c.108.1 HAD-like usually contains an insertion (sub)domain after strand 1 !
HAD-like 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
1qyi d1qyia_ A:76-97,97-107,110-122,129-140,143-160
10. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1gku d1gkub2 B:365-378,378-386,392-407,854-865,873-892
11. a.39.1 EF-hand Duplication: consists of two EF-hand units: each is made of two helices connected with calcium-binding loop !
EF Hand-like core: 4 helices; array of 2 hairpins, opened
1qxp d1qxpa2 A:377-385,595-618,625-637,641-653,660-683
1u5i d1u5ia1 A:377-385,593-616,623-635,639-651,658-681
12. a.215.1 A middle domain of Talin 1
A middle domain of Talin 1 5 helices; bundle, closed, left-handed twist; helices 2-5 adopt the Four-helical up-and-down bundle fold (scop_cf 47161)
1sj7 d1sj7c1 C:493-516,525-562,569-602,604-627,633-654
1sj7 d1sj7a1 A:489-516,525-564,569-602,604-627,633-654
1sj7 d1sj7b1 B:489-516,525-562,566-602,604-627,633-654
1sj8 d1sj8a1 A:489-516,525-564,569-603,604-627,633-656
13. f.38.1 MFS general substrate transporter
MFS general substrate transporter 12 transmembrane helices; duplication: the N- and C-terminal halves are structurally similar
1pv7 d1pv7a_ A:6-39,59-71,73-87,103-137,345-377
14. d.165.1 Ribosome inactivating proteins (RIP)
Ribosome inactivating proteins (RIP) contains mixed beta-sheet
2r9k d2r9ka1 A:13-29,114-123,148-170,169-183,189-199
1hwo d1hwoa_ A:14-31,115-124,150-167,167-181,187-197
1br6 d1br6a_ A:17-34,122-131,160-182,181-195,201-211
1j4g d1j4gd_ D:10-26,110-119,143-165,164-175,182-192
1rtc d1rtca_ A:17-34,122-131,160-182,181-195,201-211
1hwm d1hwma_ A:14-31,115-124,149-168,167-181,187-197
1ce7 d1ce7a_ A:13-30,110-119,143-165,164-178,184-194
2mll d2mlla_ A:13-30,110-119,143-165,164-178,184-194
1sz6 d1sz6a_ A:13-30,114-123,148-170,169-183,189-199
1puu d1puua_ A:13-30,114-123,148-170,169-183,189-199
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1228 (enumeration index: query498.514.965.1001.2596) of S5
2wma B:207-226,228-246,249-269,326-344,351-369
2wma D:207-226,228-246,249-269,326-344,351-369
3dyj A:1975-2002,2011-2037,2040-2070,2073-2102,2108-2162
3dyj A:2108-2162,2171-2196,2197-2225,2229-2261,2262-2291
3dyj B:2108-2162,2171-2196,2197-2225,2229-2261,2262-2291
3dyj B:1975-2002,2011-2040,2040-2070,2073-2102,2108-2162
3mkt B:66-77,312-340,353-386,385-417,420-444
3c3l B:562-573,578-589,610-631,1021-1053,1079-1095
2zca A:55-73,93-106,107-123,127-140,143-156
2zca B:55-73,93-106,107-122,127-140,143-158
3lu7 A:207-224,304-313,322-339,342-363,365-399
3lu7 B:207-224,304-313,322-339,342-363,365-399
3h97 A:373-397,414-435,436-459,469-492,511-518
2wsx A:87-101,228-250,250-278,403-436,445-467
2wsx B:87-101,228-250,250-278,403-436,445-467
2wsx C:87-101,228-250,250-278,403-436,445-467
3mlg A:13-25,26-52,67-92,115-141,156-181
3mlg B:13-25,26-52,67-92,115-141,156-181
3le7 B:15-32,124-133,161-183,182-193,200-210
3le7 A:15-32,124-133,161-183,182-193,200-210
1tr2 A:314-342,492-507,513-534,534-562,566-602
1tr2 B:293-314,314-342,346-398,513-533,534-563
1tr2 B:314-342,492-507,513-533,534-563,566-602
1tr2 A:293-314,314-342,346-398,513-534,534-562
3bjg A:17-34,122-131,160-182,181-195,201-211
3h9c A:373-397,414-435,436-459,469-492,511-518
3ljx A:53-65,64-77,97-110,123-146,149-160
3o7q A:22-57,77-89,89-115,116-147,376-398
2wsw A:87-101,228-250,251-278,403-435,445-467
2hp0 A:1-17,72-88,150-169,171-186,195-219
2hp0 B:1-17,72-88,150-169,171-186,195-219
2y6i A:548-564,590-597,603-622,621-635,636-651
3g33 B:53-72,74-93,95-115,174-193,199-216
3g33 D:53-72,74-93,95-115,174-193,199-216
3s0x B:500-518,599-607,611-628,704-716,719-728
2vc3 A:17-34,122-131,160-182,181-195,201-211
3o7p A:22-56,75-89,89-115,116-147,376-398
3h99 A:373-397,414-435,436-459,469-492,511-518
2nwl C:42-73,257-266,277-293,295-311,389-416
2nwl A:42-73,265-276,277-293,295-311,389-416
2nwl B:42-73,257-266,277-293,295-311,389-416
2nwl A:42-73,257-266,277-293,295-311,389-416
2nwl B:42-73,265-276,277-293,295-311,389-416
2nwl C:42-73,265-276,277-293,295-311,389-416
3mvg B:12-29,107-116,144-166,165-177,191-201
3q23 A:562-573,578-589,610-631,1021-1053,1079-1100
3q23 B:562-573,578-589,610-631,1021-1053,1079-1098
3bb0 A:21-41,46-70,97-115,299-316,324-357
3q0a B:562-573,578-589,610-631,1021-1053,1079-1098
3q0a A:562-573,578-589,610-631,1021-1053,1079-1100
3a73 A:207-224,304-312,322-339,342-364,365-399
2jln A:28-42,141-160,159-172,295-319,335-351
2wvo B:13-28,34-60,74-105,119-138,176-192
2wvo A:13-28,34-60,74-105,119-138,176-192
3ld1 A:115-126,131-141,143-167,176-190,197-215
2x1l A:352-373,383-407,408-431,440-470,488-495
2x1l C:352-373,383-407,408-431,440-470,488-495
2x1l B:352-373,383-407,408-431,440-470,488-495
2x1m A:352-373,383-407,408-431,440-470,488-495
3p03 B:137-151,278-299,300-325,449-482,488-500
2jlo A:28-42,141-160,159-172,295-320,335-351
2w99 A:53-72,74-93,95-115,171-193,199-220
2y9w A:87-116,220-236,254-268,289-311,375-392
2y9w B:87-116,220-236,254-268,289-311,375-392
3ob6 B:11-25,121-143,143-173,273-308,323-342
3ob6 A:11-25,121-143,143-173,270-308,323-342
3c46 A:562-573,578-589,610-631,1021-1053,1079-1100
3c46 B:562-573,578-589,610-631,1021-1053,1079-1098
3ncy A:11-25,121-144,143-168,276-308,324-345
3ncy C:11-25,121-144,143-168,276-308,324-345
3ncy B:11-25,121-144,143-168,276-308,326-345
3ncy D:11-25,121-144,143-168,276-308,324-345
2y50 A:548-564,590-597,603-622,621-635,636-651
3lu6 A:207-224,304-313,322-339,342-364,365-399
3jqz A:207-224,304-313,322-339,342-363,365-399
3jqz B:207-224,304-312,322-339,342-364,365-399
2kgx A:1655-1685,1694-1724,1723-1753,1755-1783,1789-1822
2xvw A:207-224,304-312,322-339,342-364,365-399
3gjc B:10-24,165-186,186-216,336-372,374-396
3gjc A:10-24,165-186,186-216,336-372,374-396
2w9f A:53-72,74-92,95-115,171-193,199-220
3q22 B:562-573,578-589,610-631,1021-1053,1079-1098
3q22 A:562-573,578-589,610-631,1021-1053,1079-1100
2l10 A:1205-1228,1234-1263,1263-1292,1294-1326,1328-1355
2vsq A:16-30,971-986,1002-1015,1022-1030,1031-1043
2wvq A:13-28,34-60,74-105,119-137,176-192
2wvq B:13-28,34-60,74-105,119-138,176-192
3lrb B:11-31,122-144,143-174,273-308,323-344
3lrb A:11-31,122-144,143-174,273-308,323-344
2hp3 A:1-17,72-88,150-169,171-186,195-219
2hp3 B:1-17,72-88,150-169,171-186,195-219
3l1l A:11-25,121-143,143-173,271-308,323-341
3h9b A:373-397,414-435,436-459,469-492,511-518
2wit B:137-151,275-299,300-325,449-482,488-511
2wit A:137-151,275-299,300-325,449-482,488-511
2wit C:137-151,275-299,300-325,449-482,488-511
2w96 A:53-72,74-93,95-115,171-193,199-220
2w9z A:53-72,74-93,95-115,171-193,199-220
3o5w A:13-30,114-123,148-170,169-183,189-199
3rko L:246-270,276-301,303-326,327-357,393-410
3rko C:252-280,286-308,310-333,334-367,401-419
3rko B:246-270,276-301,303-326,327-357,393-410
3rko M:252-280,286-308,310-333,334-367,401-419
3mku B:66-81,312-340,369-385,384-417,420-444
2vc4 A:17-34,122-131,160-182,181-195,201-211
3lu8 B:207-224,304-313,322-339,342-364,365-399
3lu8 A:207-224,304-313,322-339,342-363,365-399
2y3u A:548-564,590-597,603-622,621-635,636-651
3hl1 A:6-35,40-68,231-242,259-285,289-310
3hl1 B:6-35,40-68,231-242,259-285,289-310
3q24 A:562-573,578-589,610-631,1021-1053,1079-1100
3q24 B:562-573,578-589,610-631,1021-1053,1079-1098
3p3q A:53-65,64-80,97-112,123-145,149-162
3p3q B:53-65,64-77,97-113,123-146,149-162
3srp A:17-34,122-131,160-182,181-195,201-211
2jgz B:198-217,219-238,240-260,316-333,340-357
3lrc B:11-31,122-144,143-174,273-308,323-342
3lrc D:11-31,122-144,143-174,273-308,323-342
3lrc C:11-31,122-144,143-174,273-308,323-342
3lrc A:11-31,122-144,143-174,273-308,323-342
2y9x B:87-116,220-236,254-268,289-311,375-392
2y9x C:87-117,220-236,254-268,289-311,375-392
2y9x A:87-116,220-236,254-268,289-311,375-392
2y9x D:87-116,220-236,254-268,289-311,375-392
2rg9 A:13-30,114-123,148-170,169-183,189-199