1. d.3.1 Cysteine proteinases the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet !
Cysteine proteinases consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
2f4o d2f4oa1 A:166-185,221-239,305-321,323-330,332-341
2f4m d2f4ma1 A:166-185,221-239,305-321,323-330,332-342
1x3w d1x3wa1 A:49-68,101-122,190-206,208-215,217-227
2. d.278.1 Ligand-binding domain in the NO signalling and Golgi transport
Ligand-binding domain in the NO signalling and Golgi transport an N-terminal helical bundle and the C-terminal alpha-beta(2)-alpha-beta(2) subdomain enclose a ligand-binding cavity
1wc9 d1wc9a_ A:36-56,70-88,128-143,144-154,160-170
2j3w d2j3wb1 B:46-66,81-99,136-155,157-165,167-175
2j3w d2j3wf1 F:46-66,81-99,136-155,157-165,167-175
3. d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 8-stranded mixed beta-sheet; 2 layers: alpha/beta
1ah6 d1ah6a_ A:9-22,26-53,122-131,130-141,169-178
2iwx d2iwxa1 A:9-22,26-53,122-131,130-140,169-178
2qf6 d2qf6b1 B:23-36,40-67,136-145,144-155,182-191
2qf6 d2qf6c1 C:23-36,40-67,136-145,144-155,182-191
2qf6 d2qf6a1 A:23-36,40-67,136-145,144-155,182-191
2fxs d2fxsa1 A:9-22,26-53,122-131,130-141,169-178
1zw9 d1zw9a1 A:9-22,26-53,122-131,130-141,169-178
1osf d1osfa_ A:23-36,40-67,136-145,144-154,182-191
1a4h d1a4ha_ A:9-22,26-53,122-131,130-141,169-178
2bre d2breb1 B:9-22,26-53,122-131,130-141,169-178
2qf6 d2qf6d1 D:23-36,40-67,136-145,144-155,182-191
2iws d2iwsa1 A:9-22,26-53,122-131,130-141,169-178
1zwh d1zwha1 A:9-22,26-53,122-131,130-141,169-178
1ah8 d1ah8a_ A:9-22,26-53,122-131,130-141,169-178
1bgq d1bgqa_ A:9-22,26-53,122-131,130-141,169-178
1am1 d1am1a_ A:9-22,26-53,122-131,130-141,169-178
2bre d2brea1 A:9-22,26-53,122-131,130-141,169-178
1amw d1amwa_ A:9-22,26-53,122-131,130-141,169-178
2vwc d2vwca1 A:9-22,26-53,122-131,130-141,169-178
2brc d2brca1 A:9-22,26-53,122-131,130-141,169-178
1us7 d1us7a_ A:9-22,26-53,122-131,130-141,169-178
1yet d1yeta_ A:23-36,40-67,136-145,144-154,182-191
1ah8 d1ah8b_ B:9-22,26-53,122-131,130-141,169-178
3bmy d3bmya1 A:23-36,40-67,136-145,144-155,182-191
2vw5 d2vw5b1 B:9-23,26-53,122-131,130-140,169-178
2vw5 d2vw5a1 A:9-23,26-53,122-131,130-140,169-178
2vw5 d2vw5c1 C:9-24,26-53,122-131,130-140,169-178
2iwu d2iwua1 A:9-24,26-53,122-131,130-141,169-178
2vw5 d2vw5d1 D:9-24,26-53,122-131,130-141,169-178
1yes d1yesa_ A:23-37,40-67,136-145,144-154,182-191
1byq d1byqa_ A:23-37,40-67,136-145,144-154,182-191
2byi d2byia1 A:23-37,40-67,136-145,144-155,182-191
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1159 (enumeration index: query501) of S5
3r4p B:23-36,40-67,136-145,144-154,182-191
3r4p A:23-36,40-67,136-145,144-155,182-191
2bjn A:32-53,63-80,115-136,138-147,149-158
2j3t A:36-56,70-88,128-143,143-154,160-171
2cgf A:9-22,26-53,122-131,130-140,169-178
2cfh D:25-53,60-78,114-134,136-144,147-156
2cfh C:25-53,60-78,114-134,136-144,147-156
2xhx A:23-37,40-67,136-145,144-154,183-191
3kxc C:25-53,60-78,115-134,136-144,147-156
2xjx A:23-37,40-67,136-145,144-154,182-191
3k98 B:23-36,40-67,136-145,144-153,182-191
2xx4 A:9-22,26-53,122-132,131-141,169-177
3njc B:37-54,57-69,104-120,122-131,134-143
2wep A:9-22,26-53,122-131,130-140,169-178
2yk2 A:23-36,40-67,136-145,144-155,182-191
3pej A:74-93,95-122,190-201,200-209,239-248
2d4y B:71-100,125-185,195-213,214-220,222-229
2d4y A:67-101,125-186,195-213,214-220,222-229
3kd4 B:231-247,264-280,307-323,324-334,346-356
2yki A:23-36,40-67,136-145,144-155,182-191
3c11 A:9-22,26-53,122-131,130-141,169-178
3rlr B:23-36,40-67,136-145,144-154,182-191
3rlr A:23-36,40-67,136-145,144-155,182-191
3rlp A:23-36,40-67,136-145,144-155,182-191
3rlq B:23-36,40-67,136-145,144-154,182-191
3rlq A:23-36,40-67,136-145,144-155,182-191
2xd6 A:9-22,26-53,122-131,130-141,169-178
3r4m A:23-37,40-67,136-145,144-154,182-191
3b27 A:23-37,40-67,136-145,144-155,182-191
3omu B:9-22,26-53,122-131,130-139,168-177
3omu A:9-22,26-53,122-131,130-139,168-177
3ekr B:23-36,40-67,136-145,144-155,182-191
3ekr A:23-36,40-67,136-145,144-155,182-191
2yga A:9-23,26-53,122-131,130-141,169-178
3hek A:23-36,40-67,136-145,144-155,182-191
3q5j A:8-21,25-51,121-130,129-139,167-176
2ykj A:23-36,40-67,136-145,144-155,182-191
2ykb A:23-36,40-67,136-145,144-155,182-191
3q5k A:8-21,25-52,121-130,129-139,167-176
3c0e A:9-22,26-53,122-131,130-141,169-178
3o6o B:8-21,25-52,121-130,129-139,167-176
2wer B:9-23,26-53,122-131,130-141,169-178
2wer A:9-23,26-53,122-131,130-141,169-178
2xx5 A:9-22,26-53,122-131,130-141,169-178
2xk2 A:23-37,40-67,136-145,144-155,182-191
3opd C:8-22,25-52,121-130,129-140,168-176
2xx2 C:9-22,26-53,122-131,130-140,169-178
2xx2 B:9-22,26-53,122-131,130-140,169-178
2xx2 A:9-23,26-53,122-131,130-141,169-178
2xx2 D:9-23,26-53,122-131,130-141,169-178
2weq A:9-23,26-53,122-131,130-141,169-178
2yge A:9-22,26-53,122-131,130-141,169-178
3r4n B:23-36,40-67,136-145,144-154,182-191
3r4n A:23-36,40-67,136-145,144-155,182-191
3h80 A:8-21,25-52,121-130,129-140,167-176
3q5l D:8-21,25-52,121-130,129-139,167-176
3q5l A:8-21,25-52,121-130,129-138,168-176
3q5l B:8-21,25-52,121-130,129-139,167-176
3q5l C:8-21,25-52,121-130,129-140,167-176
2wuz A:98-107,209-216,215-222,358-365,376-383
2x2n A:98-107,209-216,215-222,358-365,376-383
2xjj B:23-37,40-67,136-145,144-155,182-191
2xjj A:23-37,40-67,136-145,144-155,182-191
3k60 A:9-22,26-53,122-131,130-140,169-178
2ygf A:9-22,26-53,122-131,130-141,169-178
3eko B:23-36,40-67,136-145,144-154,182-191
3eko A:23-36,40-67,136-145,144-155,182-191
2j3w D:36-56,70-87,128-143,143-154,160-171
3cue H:79-102,175-193,226-245,247-254,262-271
3cue B:79-102,175-193,226-245,247-254,262-271
3cue H:79-102,216-223,226-245,247-254,262-271
3cue N:79-102,175-193,226-245,247-254,262-271
3cue T:79-102,175-193,226-245,247-254,262-271
3cue N:79-102,216-223,226-245,247-254,262-271
3cue B:79-102,216-223,226-245,247-254,262-271
3cue T:79-102,216-223,226-245,247-254,262-271