1. d.128.1 Glutamine synthetase/guanido kinase
Glutamine synthetase/guanido kinase duplication: common core consists of two beta-alpha-beta2-alpha repeats
1tt4 d1tt4a_ A:157-166,180-190,234-243,246-268,279-291
1tt4 d1tt4b_ B:157-166,180-190,234-243,246-268,279-291
1r8g d1r8gb_ B:157-166,180-187,233-243,246-268,279-291
1r8g d1r8ga_ A:157-166,180-189,233-243,246-268,279-291
2. a.93.1 Heme-dependent peroxidases
Heme-dependent peroxidases multihelical; consists of two all-alpha domains
1itk d1itka1 A:247-262,320-330,330-337,369-379,378-392
1itk d1itkb1 B:247-262,320-330,330-337,369-379,378-392
1ub2 d1ub2a1 A:250-265,321-333,333-340,372-382,381-395
2ccd d2ccdb1 B:258-273,329-340,340-347,378-388,387-401
1cce d1ccea_ A:164-178,200-209,210-217,232-242,241-255
1dj5 d1dj5a_ A:164-178,200-209,210-217,232-242,241-255
1dse d1dsea_ A:164-174,199-209,211-217,232-242,241-255
2b10 d2b10a1 A:164-178,200-209,210-217,232-242,241-255
1sog d1soga_ A:164-178,199-209,211-217,232-242,241-255
1ds4 d1ds4a_ A:164-174,200-209,211-217,232-242,241-255
1ml2 d1ml2a_ A:164-178,200-209,211-217,232-242,241-255
1jci d1jcia_ A:164-178,200-209,211-217,232-242,241-255
1mkr d1mkra_ A:164-178,200-209,211-217,232-242,241-255
1dso d1dsoa_ A:164-174,200-209,211-217,232-242,241-255
1stq d1stqa_ A:164-178,200-209,211-217,232-242,241-255
1kxm d1kxma_ A:164-178,198-207,209-215,230-240,239-253
1dsg d1dsga_ A:164-174,200-209,211-217,232-242,241-255
1jdr d1jdra_ A:164-178,200-209,211-217,232-242,241-255
1sbm d1sbma1 A:164-178,200-209,211-217,232-242,241-255
1dsp d1dspa_ A:164-174,200-209,211-217,232-242,241-255
1krj d1krja_ A:164-178,200-209,211-217,232-242,241-255
1ccg d1ccga_ A:164-178,200-209,211-217,232-242,241-255
1cck d1ccka_ A:164-178,200-209,211-217,232-242,241-255
1z53 d1z53a1 A:164-178,200-209,211-217,232-242,241-255
1s6v d1s6va_ A:164-178,200-209,211-217,232-242,241-255
1s6v d1s6vc_ C:164-178,200-209,211-217,232-242,241-255
1ccb d1ccba_ A:164-178,200-209,211-217,232-242,241-255
5ccp d5ccpa_ A:164-178,200-209,211-217,232-242,241-255
2bcn d2bcnc1 C:164-178,200-209,211-217,232-242,241-255
3ccx d3ccxa_ A:164-178,200-209,211-217,232-242,241-255
2bcn d2bcna1 A:164-178,200-209,211-217,232-242,241-255
4ccx d4ccxa_ A:164-178,200-209,211-217,232-242,241-255
1cca d1ccaa_ A:164-178,200-209,211-217,232-242,241-255
1ccp d1ccpa_ A:164-178,200-209,211-217,232-242,241-255
7ccp d7ccpa_ A:164-178,200-209,211-217,232-242,241-255
4ccp d4ccpa_ A:164-178,200-209,211-217,232-242,241-255
6ccp d6ccpa_ A:164-178,200-209,211-217,232-242,241-255
2b10 d2b10c1 C:164-178,200-209,211-217,232-242,241-255
1u75 d1u75c_ C:164-178,200-209,211-217,232-242,241-255
2cep d2cepa_ A:164-178,200-209,211-217,232-242,241-255
1ccj d1ccja_ A:164-178,200-209,211-217,232-242,241-255
1u75 d1u75a_ A:164-178,200-209,211-217,232-242,241-255
2b0z d2b0za1 A:164-178,200-209,211-217,232-242,241-255
1cci d1ccia_ A:164-178,200-209,211-217,232-242,241-255
1u74 d1u74c_ C:164-178,200-209,211-217,232-242,241-255
2pcb d2pcbc_ C:164-178,200-209,211-217,232-242,241-255
2pcb d2pcba_ A:164-178,200-209,211-217,232-242,241-255
1dse d1dsea_ A:15-34,41-57,70-74,82-93,103-120
3. a.4.5 "Winged helix" DNA-binding domain contains a small beta-sheet (wing) !
DNA/RNA-binding 3-helical bundle core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
2b0l d2b0la1 A:164-180,180-195,197-202,213-228,246-257
2b0l d2b0lc1 C:164-180,180-195,197-202,213-228,246-256
4. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1h41 d1h41a1 A:120-138,403-414,439-446,456-473,476-490
1gqi d1gqib1 B:120-138,403-414,439-446,456-473,476-490
1gql d1gqla1 A:120-138,403-414,439-446,456-473,476-490
1h41 d1h41b1 B:120-138,403-414,439-446,456-473,476-490
1gqk d1gqkb1 B:120-138,403-414,439-446,456-473,476-490
1gqi d1gqia1 A:120-138,403-414,439-446,456-473,476-490
1gql d1gqlb1 B:120-138,403-414,439-446,456-473,476-490
1gqk d1gqka1 A:120-138,403-414,439-446,456-473,476-490
1gqj d1gqjb1 B:120-138,403-414,439-446,456-473,476-490
5. d.258.1 Chorismate synthase, AroC
Chorismate synthase, AroC duplication: consists of two DCoH-like beta(2)-alpha-beta(2)-alpha structural repeats; 3 layers, beta/alpha/beta
1r52 d1r52c_ C:128-148,180-188,215-225,237-250,341-369
1r52 d1r52d_ D:128-148,180-188,215-225,237-250,341-369
1r52 d1r52a_ A:128-148,180-188,215-225,237-250,341-369
1r52 d1r52b_ B:128-148,180-188,215-225,237-250,341-369
1r53 d1r53a_ A:128-148,180-188,215-225,237-250,341-371
1um0 d1um0a_ A:122-147,166-173,199-211,228-241,326-355
1umf d1umfb_ B:122-147,166-173,199-211,228-241,326-355
1umf d1umfa_ A:123-147,166-173,199-211,228-241,326-355
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1140 (enumeration index: query524.1125) of S5
3m2g A:164-178,200-209,211-217,232-242,241-255
2g85 A:137-149,181-190,219-229,243-256,345-371
3m2a A:164-178,200-209,211-217,232-242,241-255
2ia8 A:164-178,200-209,211-217,232-242,241-255
3qe7 A:13-29,42-62,68-72,288-299,302-320
3m28 A:164-178,200-209,211-217,232-242,241-255
3m2c A:164-178,200-209,211-217,232-242,241-255
3m26 A:164-178,200-209,211-217,232-242,241-255
2v2e A:164-178,200-209,211-217,232-242,241-255
2vc9 A:245-262,575-590,592-600,606-620,624-638
2xj5 A:164-178,200-209,211-217,232-242,241-255
2icv A:164-178,200-209,211-217,232-242,241-255
3m25 A:164-178,200-209,211-217,232-242,241-255
3e2o A:164-178,200-209,211-217,232-242,241-255
2vcb A:245-262,575-591,592-600,606-620,624-638
2vcc A:245-262,575-590,592-600,606-620,624-638
3m2d A:164-178,200-209,211-217,232-242,241-255
3hgk F:124-140,142-156,157-161,162-174,185-200
3hgk E:124-140,142-156,157-161,162-174,185-200
3hgk G:124-140,142-156,157-161,162-174,185-200
3m23 A:164-178,200-209,211-217,232-242,241-255
3m29 A:164-178,200-209,211-217,232-242,241-255
3m2h A:164-178,200-209,211-217,232-242,241-255
2v23 A:164-178,200-209,211-217,232-242,241-255
3m2f A:164-178,200-209,211-217,232-242,241-255
2o2e A:51-63,96-116,118-124,127-141,211-235
2o2e B:51-63,95-116,118-124,127-141,211-235
3m2b A:164-178,200-209,211-217,232-242,241-255
3m27 A:164-178,200-209,211-217,232-242,241-255
3m2e A:164-178,200-209,211-217,232-242,241-255
3m2i A:164-178,200-209,211-217,232-242,241-255
2xj8 A:164-178,200-209,211-217,232-242,241-255
2vca A:245-262,575-590,592-600,606-620,624-638