1. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
2mys d2mysa2 A:474-488,519-528,577-584,585-591,648-661
1dfl d1dfla2 A:471-493,516-525,576-583,584-590,644-663
1dfl d1dflb2 B:471-494,516-525,576-583,584-590,644-663
1lkx d1lkxc_ C:397-420,442-451,501-508,509-516,561-581
1br4 d1br4c2 C:476-499,521-530,579-586,587-594,658-678
1br4 d1br4a2 A:476-499,521-530,579-586,587-594,658-678
1br4 d1br4e2 E:476-499,521-530,579-586,587-594,658-678
1br4 d1br4g2 G:476-499,521-530,579-586,587-594,658-678
1br1 d1br1c2 C:476-499,521-530,579-586,587-594,658-678
1br1 d1br1a2 A:476-499,521-530,579-586,587-594,658-678
1lkx d1lkxa_ A:397-420,442-450,501-508,509-516,561-581
1lkx d1lkxb_ B:397-420,442-450,501-508,509-516,561-581
1br1 d1br1e2 E:476-499,521-530,579-585,588-594,658-678
1br1 d1br1g2 G:476-499,521-530,579-585,588-594,658-678
1mnd d1mnda2 A:465-486,509-519,566-573,574-581,629-649
1qvi d1qvia2 A:471-504,516-525,576-583,584-590,644-664
1l2o d1l2oa2 A:471-504,517-525,576-582,585-590,644-664
1lkx d1lkxd_ D:397-430,442-451,501-508,509-516,561-581
1kwo d1kwoa2 A:471-504,517-525,577-583,584-590,643-664
1jwy d1jwya2 A:476-509,521-530,577-584,585-592,640-660
1jx2 d1jx2a2 A:476-509,521-530,577-584,585-592,640-660
1mma d1mmaa2 A:465-495,510-519,566-572,575-581,629-649
1s5g d1s5ga2 A:471-504,515-525,577-583,584-590,644-664
1oe9 d1oe9a2 A:448-481,491-501,546-553,554-561,635-655
1dfk d1dfka2 A:471-504,514-525,576-583,584-590,644-664
1kk7 d1kk7a2 A:471-504,513-525,577-583,584-590,644-664
1w7i d1w7ia2 A:448-481,491-501,546-553,554-561,635-655
1w7j d1w7ja2 A:448-481,491-501,546-553,554-561,635-655
1vom d1voma2 A:465-498,509-519,566-573,574-581,629-649
1mmn d1mmna2 A:465-498,509-519,566-573,574-581,629-649
1b7t d1b7ta4 A:471-504,513-525,576-583,584-590,644-664
1fmw d1fmwa2 A:465-498,509-519,566-573,574-581,629-649
1d1c d1d1ca2 A:465-498,509-519,566-573,574-581,629-649
1kk8 d1kk8a2 A:471-504,513-525,576-583,584-590,644-664
1br2 d1br2e2 E:476-509,520-530,579-586,587-594,658-678
1br2 d1br2b2 B:476-509,520-530,579-586,587-594,658-678
1br2 d1br2a2 A:476-509,520-530,579-586,587-594,658-678
1br2 d1br2d2 D:476-509,520-530,579-586,587-594,658-678
1br2 d1br2c2 C:476-509,520-530,579-586,587-594,658-678
1br2 d1br2f2 F:476-509,520-530,579-586,587-594,658-678
1kqm d1kqma2 A:471-504,513-525,577-583,584-590,644-664
1d0x d1d0xa2 A:465-498,509-519,566-572,575-581,629-649
1d0y d1d0ya2 A:465-498,509-519,566-572,575-581,629-649
1mmg d1mmga2 A:465-498,508-519,566-572,575-581,629-649
1d0z d1d0za2 A:465-498,508-519,566-572,575-581,629-649
1sr6 d1sr6a2 A:471-504,511-525,577-583,584-590,644-664
1mne d1mnea2 A:465-498,508-519,566-572,575-581,629-649
1d1a d1d1aa2 A:465-498,508-519,566-572,575-581,629-649
1mmd d1mmda2 A:465-498,508-519,566-572,575-581,629-649
1lvk d1lvka2 A:465-498,508-519,566-572,575-581,629-649
1fmv d1fmva2 A:465-498,508-519,566-572,575-581,629-649
1d1b d1d1ba2 A:465-493,505-519,566-572,575-581,629-649
2. i.15.1 Muscle protein complexes
Muscle protein complexes
1o1a d1o1ad_ D:474-488,519-528,578-584,585-591,648-661
1o18 d1o18d_ D:474-488,519-528,578-584,585-591,648-661
1o1a d1o1aj_ J:474-488,519-528,578-584,585-591,648-661
1o1c d1o1cd_ D:474-488,519-528,578-584,585-591,648-661
1o1f d1o1fa_ A:474-488,519-528,578-584,585-591,648-661
1o1d d1o1da_ A:474-488,519-528,578-584,585-591,648-661
1mvw d1mvwd_ D:474-488,519-528,578-584,585-591,648-661
1o1f d1o1fd_ D:474-488,519-528,578-584,585-591,648-661
1o1g d1o1gd_ D:474-488,519-528,578-584,585-591,648-661
1o1c d1o1ca_ A:474-488,519-528,578-584,585-591,648-661
1o19 d1o19d_ D:474-488,519-528,578-584,585-591,648-661
1o1g d1o1ga_ A:474-488,519-528,578-584,585-591,648-661
1o1d d1o1dd_ D:474-488,519-528,578-584,585-591,648-661
1m8q d1m8qa_ A:474-488,519-528,578-584,585-591,648-661
1o1g d1o1gm_ M:474-488,519-528,578-584,585-591,648-661
1o1e d1o1ed_ D:474-488,519-528,578-584,585-591,648-661
1o1g d1o1gg_ G:474-488,519-528,578-584,585-591,648-661
1m8q d1m8qg_ G:474-488,519-528,578-584,585-591,648-661
1o1a d1o1ap_ P:474-488,519-528,578-584,585-591,648-661
1m8q d1m8qd_ D:474-488,519-528,578-584,585-591,648-661
1o1b d1o1bd_ D:474-488,519-528,578-584,585-591,648-661
1o18 d1o18a_ A:474-488,519-528,578-584,585-591,648-661
1o1e d1o1ea_ A:474-488,519-528,578-584,585-591,648-661
1o19 d1o19a_ A:474-488,519-528,578-584,585-591,648-661
1o1d d1o1dg_ G:474-488,519-528,578-584,585-591,648-661
1o19 d1o19g_ G:474-488,519-528,578-584,585-591,648-661
1o1f d1o1fg_ G:474-488,519-528,578-584,585-591,648-661
1mvw d1mvwg_ G:474-488,519-528,578-584,585-591,648-661
1o1b d1o1ba_ A:474-488,519-528,578-584,585-591,648-661
1o1b d1o1bg_ G:474-488,519-528,578-584,585-591,648-661
1mvw d1mvwa_ A:474-488,519-528,578-584,585-591,648-661
1o18 d1o18p_ P:474-488,519-528,578-584,585-591,648-661
1o1e d1o1ep_ P:474-488,519-528,578-584,585-591,648-661
1m8q d1m8qp_ P:474-488,519-528,578-584,585-591,648-661
1o18 d1o18g_ G:474-488,519-528,578-584,585-591,648-661
1o1f d1o1fj_ J:474-488,519-528,578-584,585-591,648-661
1o1e d1o1eg_ G:474-488,519-528,578-584,585-591,648-661
1o1c d1o1cg_ G:474-488,519-528,578-584,585-591,648-661
1o1d d1o1dm_ M:474-488,519-528,578-584,585-591,648-661
1o19 d1o19j_ J:474-488,519-528,578-584,585-591,648-661
1o1c d1o1cp_ P:474-488,519-528,578-584,585-591,648-661
1o1b d1o1bj_ J:474-488,519-528,578-584,585-591,648-661
1o18 d1o18j_ J:474-488,519-528,578-584,585-591,648-661
1o18 d1o18m_ M:474-488,519-528,578-584,585-591,648-661
1o1d d1o1dp_ P:474-488,519-528,578-584,585-591,648-661
1o1e d1o1ej_ J:474-488,519-528,578-584,585-591,648-661
1mvw d1mvwm_ M:474-488,519-528,578-584,585-591,648-661
1o1d d1o1dj_ J:474-488,519-528,578-584,585-591,648-661
1o19 d1o19m_ M:474-488,519-528,578-584,585-591,648-661
1o1c d1o1cj_ J:474-488,519-528,578-584,585-591,648-661
1o19 d1o19s_ S:474-488,519-528,578-584,585-591,648-661
1mvw d1mvwp_ P:474-488,519-528,578-584,585-591,648-661
1o1e d1o1em_ M:474-488,519-528,578-584,585-591,648-661
1o1a d1o1aa_ A:474-488,519-528,578-584,585-591,648-661
1o1g d1o1gj_ J:474-488,519-528,578-584,585-591,648-661
1o1a d1o1am_ M:474-488,519-528,578-584,585-591,648-661
1o1g d1o1gp_ P:474-488,519-528,578-584,585-591,648-661
1mvw d1mvwj_ J:474-488,519-528,578-584,585-591,648-661
1o1a d1o1ag_ G:474-488,519-528,578-584,585-591,648-661
1i84 d1i84v_ V:476-499,521-530,579-586,587-594,658-678
1i84 d1i84s_ S:476-499,521-530,579-586,587-594,658-678
3. d.77.1 RL5-like
RL5-like beta-alpha-beta(2)-alpha-beta(3)-alpha; 2 layers, alpha/beta; antiparallel beta-sheet: order 231654
2nrq d2nrqa1 A:59-74,75-85,93-100,118-125,131-144
2nwu d2nwub1 B:49-64,65-77,80-86,110-116,118-128
2nwu d2nwua1 A:49-64,65-77,80-86,110-116,118-128
2ogk d2ogkb1 B:60-76,75-86,94-101,118-126,131-143
2ogk d2ogka1 A:60-76,75-86,94-101,118-127,131-144
2ogk d2ogkd1 D:60-76,75-86,94-101,118-127,131-144
4. d.142.2 DNA ligase/mRNA capping enzyme, catalytic domain has a circularly permuted topology !
ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies
1p16 d1p16a2 A:49-56,201-215,218-227,238-243,366-390
5. b.26.1 SMAD/FHA domain has a few short helices inserted in loops !
SMAD/FHA domain sandwich; 11 strands in 2 sheets; greek-key
1qwt d1qwtb_ B:190-197,369-386,388-392,400-404,404-420
1j2f d1j2fa_ A:190-197,369-386,387-392,400-404,404-420
6. d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain N-terminal domain is the classic Rossmann-fold !
FwdE/GAPDH domain-like core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1
1e5q d1e5qh2 H:175-185,199-207,217-223,239-249,248-262
1e5q d1e5qb2 B:175-185,199-207,217-223,239-249,248-262
1e5q d1e5qa2 A:175-185,199-207,217-223,239-249,248-262
1e5q d1e5qf2 F:175-185,199-207,217-223,239-249,248-262
1e5q d1e5qg2 G:175-185,199-207,217-223,239-249,248-262
7. a.3.1 Cytochrome c covalently-bound heme completes the core !
Cytochrome c core: 3 helices; folded leaf, opened
2fwl d2fwla1 A:3-16,41-53,52-61,62-71,76-92
8. k.1.1 Hybrid and chimeric proteins
Hybrid and chimeric proteins
1g8x d1g8xa_ A:465-498,509-519,566-573,574-581,629-649
1g8x d1g8xb_ B:465-498,507-519,566-573,574-581,629-649
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1110 (enumeration index: query525) of S5
2w4v C:471-493,516-525,576-583,584-590,644-663
2w4h M:474-507,519-528,577-584,585-591,648-668
2jj9 A:465-488,509-519,566-573,574-581,629-649
3s24 F:277-288,417-425,438-445,456-460,554-565
3s24 E:277-286,417-425,437-445,456-460,554-567
3s24 D:277-288,417-426,437-445,456-460,554-564
3s24 A:277-286,417-426,437-445,456-460,554-564
3s24 C:277-286,417-425,438-445,456-460,554-564
3s24 G:277-286,417-425,438-445,456-460,554-566
3s24 B:277-286,417-425,437-445,456-460,554-564
2q9b A:2-12,262-274,275-282,288-292,293-303
2q9b B:1-12,262-274,275-283,288-292,293-303
3i5f A:474-507,519-528,578-585,586-592,646-666
2og2 A:24-34,287-299,301-308,313-317,318-328
2w8i H:56-64,277-286,295-304,312-320,322-333
2w8i G:56-64,277-286,295-304,312-320,322-333
2w8i C:56-64,277-286,295-304,312-320,322-333
2w8i F:56-64,277-286,295-304,312-320,322-333
2w8i D:56-64,277-286,295-304,312-320,322-333
2w8i E:56-64,277-286,295-304,312-320,322-333
2w8i A:56-64,277-286,295-304,312-320,322-333
2w8i B:56-64,277-286,295-304,312-320,322-333
2awp B:61-82,103-118,121-130,151-160,171-182
2y0r X:465-497,508-519,566-573,574-581,629-649
3l9i A:467-500,510-520,575-582,583-590,642-662
2j58 F:56-64,277-286,295-304,312-320,322-333
2j58 G:56-64,277-286,295-304,312-320,322-333
2j58 D:56-64,277-286,295-304,312-320,322-333
2j58 A:56-64,277-286,295-304,312-320,322-333
2j58 C:56-64,277-286,295-304,312-320,322-333
2j58 B:56-64,277-286,295-304,312-320,322-333
2j58 H:56-64,277-286,295-304,312-320,322-333
2j58 E:56-64,277-286,295-304,312-320,322-333
3rtx A:277-288,420-427,438-445,456-460,554-566
3rtx B:277-288,417-428,437-445,456-460,554-567
3d7a B:53-68,69-81,84-91,110-117,119-129
3d7a A:53-68,69-81,84-91,110-117,119-129
3c9g A:233-245,246-258,261-268,288-297,299-309
3ki5 A:438-453,497-506,526-535,592-597,610-618
2jhr A:465-488,510-519,566-573,574-581,629-649
2x51 A:467-500,511-520,575-582,583-590,642-662
3ki2 A:438-453,497-506,526-535,592-597,610-618
3i5i A:474-507,519-528,578-584,587-592,646-666
3j04 A:476-499,521-530,579-586,587-594,658-678
3j04 D:476-499,521-530,579-586,587-594,658-678
3ki0 A:438-453,497-506,527-535,592-597,610-618
2x9h A:465-488,509-519,566-573,574-581,629-649
3n9l A:259-266,374-383,387-393,396-402,402-413
2w4g M:474-507,519-528,577-584,585-591,648-668
2q9a A:2-12,262-274,275-282,288-292,293-303
2q9a B:1-12,262-274,275-283,288-292,293-303
2q6m A:438-453,497-506,526-535,592-597,610-618
3i5g A:474-507,519-528,578-585,586-592,646-666
1w9i A:465-498,510-519,566-573,574-581,629-649
2w4w C:471-493,516-525,576-583,584-590,644-663
3mkd A:465-488,509-519,566-573,574-581,629-649
2wny A:58-74,76-84,88-95,112-120,125-137
2wny B:58-74,76-84,88-95,112-120,124-138
3myl X:465-498,510-519,566-573,574-581,629-649
3i5h A:474-507,519-528,578-585,586-592,646-666
2yhs A:191-204,453-465,467-473,479-483,484-494
1w8j D:448-481,491-501,546-553,554-561,635-655
1w8j B:448-481,491-501,546-553,554-561,635-655
1w8j A:448-481,491-501,546-553,554-561,635-655
1w8j C:448-481,491-501,546-553,554-561,635-655
3ki6 A:438-453,497-506,526-535,592-597,610-618
1w9l A:465-488,509-519,566-573,574-581,629-649
2w4t C:471-493,516-525,576-583,584-590,644-663
2otg A:471-504,513-525,577-583,584-590,644-663
2y9e X:464-498,508-519,566-573,574-581,629-649
2vak E:194-209,215-234,239-243,244-249,290-308
2vak F:194-209,215-234,239-243,244-249,290-308
2vak L:194-209,215-234,239-243,244-249,290-308
2vak G:194-209,215-234,239-243,244-249,290-308
2vak K:194-207,215-234,239-243,244-249,290-308
2vak J:194-207,215-234,239-243,244-249,290-308
2vak B:194-209,215-234,239-243,244-249,290-308
2vak A:194-209,215-234,239-243,244-249,290-308
2vak C:194-209,215-234,239-243,244-249,290-308
2vak H:194-209,215-234,239-243,244-249,290-308
2vak I:194-207,215-234,239-243,244-249,290-308
3ki1 A:438-453,497-506,527-535,592-597,610-618
2v26 A:467-500,510-520,575-582,583-590,642-662
2w4a M:474-507,519-528,577-584,585-591,648-668
2q9c B:1-12,262-274,275-283,288-292,293-303
2q9c A:1-12,262-274,275-282,288-292,293-303
2os8 A:471-504,516-525,577-583,584-590,644-663
1w9k A:465-498,510-519,566-573,574-581,629-649
3mnq A:465-488,509-519,566-573,574-581,629-649
2y8i X:465-498,508-519,566-573,574-581,629-648
3ny6 A:438-453,497-506,526-535,592-597,610-618
3iyl U:181-197,202-221,226-230,231-237,277-295
2xo8 A:465-488,509-519,566-573,574-581,629-649
2xel A:465-488,509-519,566-573,574-581,629-649
2w8h C:56-64,277-286,295-304,312-320,322-333
2w8h H:56-64,277-286,295-304,312-320,322-333
2w8h F:56-64,277-286,295-304,312-320,322-333
2w8h A:56-64,277-286,295-304,312-320,322-333
2w8h D:56-64,277-286,295-304,312-320,322-333
2w8h E:56-64,277-286,295-304,312-320,322-333
2w8h G:56-64,277-286,295-304,312-320,322-333
2w8h B:56-64,277-286,295-304,312-320,322-333
1w9j A:465-488,509-519,566-573,574-581,629-649
3dtp B:476-499,521-530,579-586,587-594,658-678
3dtp A:476-509,520-530,579-586,587-594,658-678
2vas A:467-500,511-520,575-582,583-590,642-662
2aka A:465-498,510-519,566-573,574-581,629-649
2bkh A:467-500,510-520,575-582,583-590,642-662
2bki A:467-500,510-520,575-582,583-590,642-662
3bz8 A:465-488,509-519,566-573,574-581,629-649
2dfs A:448-481,491-501,546-553,554-561,635-655
2dfs M:448-481,491-501,546-553,554-561,635-655
2vb6 A:467-500,511-520,575-582,583-590,642-662