1. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1rc6 d1rc6a_ A:1025-1030,1193-1200,1199-1207,1225-1233,1232-1241
1rc6 d1rc6b_ B:1025-1030,1193-1200,1199-1207,1225-1233,1232-1241
1sfn d1sfnb_ B:2014-2020,2181-2185,2185-2193,2210-2219,2219-2227
1sfn d1sfna_ A:1014-1020,1181-1185,1185-1193,1210-1219,1219-1227
1sef d1sefa_ A:28-34,198-202,202-210,228-236,236-240
1tq5 d1tq5a1 A:1-7,169-177,180-189,201-208,211-219
1zx5 d1zx5a1 A:5-10,237-244,247-255,272-278,281-288
2ixc d2ixcd1 D:10-16,55-65,69-78,109-116,117-125
1pm7 d1pm7a_ A:10-16,55-65,69-78,109-116,117-125
2ixc d2ixca1 A:10-16,55-65,69-78,109-116,117-125
1pm7 d1pm7b_ B:10-16,55-65,70-78,109-115,117-125
1yqc d1yqcb1 B:16-21,69-74,77-84,114-120,121-125
2ixc d2ixcb1 B:10-16,55-65,70-78,109-115,117-125
1xsq d1xsqb_ B:16-21,69-74,77-84,114-120,121-125
1xsr d1xsra_ A:16-21,69-74,77-84,114-120,121-125
1yqc d1yqca1 A:16-21,69-74,77-84,114-120,121-125
1xsr d1xsrb_ B:16-21,69-74,77-84,114-120,121-125
1j1l d1j1la_ A:3-13,179-186,190-198,214-222,224-231
1y3t d1y3tb1 B:14-20,233-237,239-247,263-271,273-280
1y3t d1y3ta1 A:14-20,233-237,239-247,263-271,273-280
2. b.6.1 Cupredoxins contains copper-binding site !
Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands
1ov8 d1ov8b_ B:3-8,39-51,56-63,92-99,102-113
1ov8 d1ov8c_ C:3-8,39-51,56-63,92-101,102-113
1qhq d1qhqa_ A:3-8,39-51,56-63,92-101,102-113
1ov8 d1ov8a_ A:3-8,39-51,56-63,92-101,102-113
1ov8 d1ov8d_ D:3-8,39-51,56-63,92-99,102-114
3. b.62.1 Cyclophilin-like
Cyclophilin-like barrel, closed; n=8, S=10; complex topology
1x7f d1x7fa1 A:278-283,299-304,305-311,320-325,326-331
4. b.18.1 Galactose-binding domain-like
Galactose-binding domain-like sandwich; 9 strands in 2 sheets; jelly-roll
1yq2 d1yq2c3 C:14-18,135-145,148-155,156-165,165-174
1yq2 d1yq2f3 F:14-18,135-145,148-155,156-163,165-174
5. b.82.2 Clavaminate synthase-like Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold !
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1vrb d1vrbc1 C:29-35,144-148,148-157,213-220,221-228
1uo9 d1uo9a_ A:30-35,180-186,187-197,221-227,242-246
1otj d1otjc_ C:43-49,96-100,106-120,243-250,253-260
1otj d1otjd_ D:43-49,96-100,106-120,243-250,253-259
1os7 d1os7d_ D:43-49,96-100,106-120,243-250,253-259
6. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
1te5 d1te5b_ B:13-23,186-196,198-206,207-215,220-227
7. b.82.6 Thiamin pyrophosphokinase, substrate-binding domain
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1ig0 d1ig0a1 A:3-8,247-255,259-267,269-274,285-289
1ig0 d1ig0b1 B:3-8,247-255,259-267,269-274,285-289
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 76 (enumeration index: query529) of S5
2og7 A:74-80,150-156,166-176,274-282,284-292
3jvf C:16-24,58-69,79-88,90-101,111-116
2d4y A:347-352,360-368,390-395,396-401,407-415
2d4y B:347-352,360-368,390-395,396-401,407-415
2g9z A:9-14,262-269,275-282,284-289,299-305
2g9z B:9-14,263-269,275-282,284-289,299-304
2xdv A:62-68,178-182,183-191,229-236,238-245
2hh9 B:9-14,263-269,275-282,284-289,299-304
2hh9 A:9-14,263-269,275-282,284-289,299-304
3gf6 B:32-37,131-145,148-160,172-179,190-204
3gf6 A:32-37,131-145,148-160,172-179,190-204
2og5 A:74-80,150-156,166-176,274-282,284-292
2og6 A:74-80,150-156,166-176,274-282,284-292
3acl A:4-13,179-186,190-198,214-221,224-231