1. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
1te5 d1te5a_ A:16-21,33-44,45-54,59-69,73-80
2. b.1.2 Fibronectin type III
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
1a21 d1a21a1 A:17-24,29-39,40-51,57-65,68-78
1jps d1jpst1 T:19-26,31-40,44-53,59-67,70-80
1wv7 d1wv7t1 T:19-26,32-41,42-49,59-67,70-79
1ahw d1ahwf1 F:19-26,31-41,43-53,59-67,70-80
1wss d1wsst1 T:19-26,32-41,42-49,59-67,70-79
2flb d2flbt1 T:19-26,31-41,42-53,59-67,70-80
1w0y d1w0yt1 T:19-26,33-41,42-49,58-67,70-78
2hft d2hfta1 A:19-26,31-41,42-53,59-67,70-80
1w2k d1w2kt1 T:19-26,33-41,42-49,58-67,70-78
2b8o d2b8ot1 T:19-26,31-41,42-53,59-67,70-80
1o5d d1o5dt1 T:19-27,31-41,42-53,59-67,70-80
1j9c d1j9ct1 T:19-26,31-41,42-49,59-67,70-80
2zp0 d2zp0t1 T:19-26,32-41,42-49,58-67,70-79
1wqv d1wqvt1 T:19-26,32-41,42-49,58-67,70-79
1wtg d1wtgt1 T:19-26,32-41,42-49,58-67,70-79
1wun d1wunt1 T:19-26,32-41,42-49,58-67,70-79
1boy d1boya1 A:19-26,31-41,42-53,58-67,70-80
1z6j d1z6jt1 T:19-26,31-41,42-49,58-67,70-80
1a21 d1a21b1 B:17-24,29-39,40-51,56-65,68-78
1fak d1fakt1 T:19-27,31-41,42-49,58-67,70-80
2aer d2aert1 T:19-26,31-41,42-49,58-67,70-80
2a2q d2a2qt1 T:19-26,31-41,42-49,58-67,70-80
2flr d2flrt1 T:19-27,31-41,42-49,58-67,70-80
2b7d d2b7dt1 T:19-27,31-41,42-49,58-67,70-80
2f9b d2f9bt1 T:19-27,31-41,42-49,58-67,70-80
1tfh d1tfhb1 B:19-26,31-41,42-53,59-67,70-80
2fir d2firt1 T:19-26,31-41,42-49,58-67,70-80
1dan d1dan.1 T:19-26,31-41,42-49,58-67,70-80
1tfh d1tfha1 A:19-26,31-41,42-53,59-67,70-80
2aei d2aeit1 T:19-26,31-41,42-48,58-67,70-80
1uj3 d1uj3c1 C:619-626,631-641,645-653,659-667,670-680
3. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1w8x d1w8xi_ I:285-294,302-311,314-320,320-333,357-365
1gw7 d1gw7d_ D:1285-1294,1302-1311,1314-1320,1320-1333,1357-1365
1hb7 d1hb7d_ D:285-294,302-311,314-320,320-333,357-365
1hb7 d1hb7j_ J:285-294,302-311,314-320,320-333,357-365
1gw7 d1gw7j_ J:1285-1294,1302-1311,1314-1320,1320-1333,1357-1365
1hb7 d1hb7a_ A:285-294,302-311,314-320,320-333,357-365
1gw7 d1gw7a_ A:1285-1294,1302-1311,1314-1320,1320-1333,1357-1365
1gw8 d1gw8d_ D:1285-1294,1302-1311,1314-1320,1320-1333,1357-1365
1hb7 d1hb7g_ G:285-294,302-311,314-320,320-333,357-365
1gw8 d1gw8g_ G:1285-1294,1302-1311,1314-1320,1320-1333,1357-1365
1gw8 d1gw8a_ A:1285-1294,1302-1311,1314-1320,1320-1333,1357-1365
1gw8 d1gw8j_ J:1285-1294,1302-1311,1314-1320,1320-1333,1357-1365
1gw7 d1gw7g_ G:1285-1294,1302-1311,1314-1320,1320-1333,1357-1365
1w8x d1w8xb_ B:285-294,302-311,314-320,320-333,357-365
1w8x d1w8xj_ J:282-294,302-311,314-320,320-333,357-365
1w8x d1w8xd_ D:285-294,302-311,314-320,320-333,357-365
1w8x d1w8xh_ H:282-294,302-311,314-320,320-333,357-365
1hb9 d1hb9d_ D:63-80,95-104,107-113,113-126,189-197
1hb5 d1hb5a_ A:63-80,95-104,107-113,113-126,189-197
1hb9 d1hb9j_ J:63-80,95-104,107-113,113-126,189-197
1hb9 d1hb9g_ G:63-80,95-104,107-113,113-126,189-197
1hb9 d1hb9a_ A:63-80,95-104,107-113,113-126,189-197
1hb5 d1hb5d_ D:63-80,95-104,107-113,113-126,189-197
1hb5 d1hb5g_ G:63-80,95-104,107-113,113-126,189-197
1hb7 d1hb7g_ G:63-80,95-104,107-113,113-126,189-197
1gw8 d1gw8g_ G:1063-1080,1095-1104,1107-1113,1113-1126,1189-1197
1gw8 d1gw8a_ A:1063-1080,1095-1104,1107-1113,1113-1126,1189-1197
1w8x d1w8xg_ G:63-80,95-104,107-113,113-126,189-197
1w8x d1w8xh_ H:63-80,95-104,107-113,113-126,189-197
1hb7 d1hb7a_ A:63-80,95-104,107-113,113-126,189-197
1gw7 d1gw7j_ J:1063-1080,1095-1104,1107-1113,1113-1126,1189-1197
1hb7 d1hb7d_ D:63-80,95-104,107-113,113-126,189-197
1w8x d1w8xb_ B:63-80,95-104,107-113,113-126,189-197
1w8x d1w8xd_ D:63-80,95-104,107-113,113-126,189-197
1hb7 d1hb7j_ J:63-80,95-104,107-113,113-126,189-197
1w8x d1w8xa_ A:63-80,95-104,107-113,113-126,189-197
1w8x d1w8xj_ J:63-80,95-104,107-113,113-126,189-197
1gw8 d1gw8j_ J:1063-1080,1095-1104,1107-1113,1113-1126,1189-1197
1gw7 d1gw7d_ D:1063-1080,1095-1104,1107-1113,1113-1126,1189-1197
1gw8 d1gw8d_ D:1063-1080,1095-1104,1107-1113,1113-1126,1189-1197
1gw7 d1gw7g_ G:1063-1080,1095-1104,1107-1113,1113-1126,1189-1197
1w8x d1w8xi_ I:63-80,95-104,107-113,113-126,189-197
1gw7 d1gw7a_ A:1063-1080,1095-1104,1107-1113,1113-1126,1189-1197
1w8x d1w8xk_ K:63-80,95-104,107-113,113-126,188-197
1w8x d1w8xf_ F:63-80,95-104,107-113,113-126,189-197
1w8x d1w8xe_ E:63-80,95-104,107-113,113-126,189-197
1gw8 d1gw8l_ L:3063-3080,3095-3104,3107-3113,3113-3126,3189-3197
1hb7 d1hb7c_ C:63-80,95-104,107-113,113-126,189-197
1hb7 d1hb7l_ L:63-80,95-104,107-113,113-126,189-197
1gw7 d1gw7c_ C:3063-3080,3095-3104,3107-3113,3113-3126,3189-3197
1hb7 d1hb7f_ F:63-80,95-104,107-113,113-126,189-197
1gw7 d1gw7l_ L:3063-3080,3095-3104,3107-3113,3113-3126,3189-3197
1hb7 d1hb7i_ I:63-80,95-104,107-113,113-126,189-197
1gw8 d1gw8c_ C:3063-3080,3095-3104,3107-3113,3113-3126,3189-3197
1gw8 d1gw8f_ F:3063-3080,3095-3104,3107-3113,3113-3126,3189-3197
1gw7 d1gw7f_ F:3063-3080,3095-3104,3107-3113,3113-3126,3189-3197
1gw8 d1gw8i_ I:3063-3080,3095-3104,3107-3113,3113-3126,3189-3197
1gw7 d1gw7i_ I:3063-3080,3095-3104,3107-3113,3113-3126,3189-3197
1hb5 d1hb5c_ C:63-80,95-104,107-113,113-126,189-197
1hb9 d1hb9c_ C:63-80,95-104,107-113,113-126,189-197
1hb9 d1hb9i_ I:63-80,95-104,107-113,113-126,189-197
1hb9 d1hb9f_ F:63-80,95-104,107-113,113-126,189-197
1hb5 d1hb5f_ F:63-80,95-104,107-113,113-126,189-197
1hb9 d1hb9l_ L:63-80,95-104,107-113,113-126,189-197
1hb5 d1hb5i_ I:63-80,95-104,107-113,113-126,189-197
1gw7 d1gw7h_ H:2063-2080,2095-2104,2107-2113,2113-2126,2189-2197
1hb9 d1hb9e_ E:63-80,95-104,107-113,113-126,189-197
1hb5 d1hb5b_ B:63-80,95-104,107-113,113-126,189-197
1hb5 d1hb5h_ H:63-80,95-104,107-113,113-126,189-197
1hb9 d1hb9b_ B:63-80,95-104,107-113,113-126,189-197
1gw7 d1gw7b_ B:2063-2080,2095-2104,2107-2113,2113-2126,2189-2197
1gw8 d1gw8h_ H:2063-2080,2095-2104,2107-2113,2113-2126,2189-2197
1hb5 d1hb5e_ E:63-80,95-104,107-113,113-126,189-197
1gw7 d1gw7e_ E:2063-2080,2095-2104,2107-2113,2113-2126,2189-2197
1hb9 d1hb9h_ H:63-80,95-104,107-113,113-126,189-197
1gw8 d1gw8e_ E:2063-2080,2095-2104,2107-2113,2113-2126,2189-2197
1hb9 d1hb9k_ K:63-80,95-104,107-113,113-126,189-197
1gw8 d1gw8b_ B:2063-2080,2095-2104,2107-2113,2113-2126,2189-2197
1hb7 d1hb7b_ B:63-80,95-104,107-113,113-126,189-197
1hb7 d1hb7k_ K:63-80,95-104,107-113,113-126,189-197
1gw8 d1gw8k_ K:2063-2080,2095-2104,2107-2113,2113-2126,2189-2197
1hb7 d1hb7e_ E:63-80,95-104,107-113,113-126,189-197
1hb7 d1hb7h_ H:63-80,95-104,107-113,113-126,189-197
1gw7 d1gw7k_ K:2063-2080,2095-2104,2107-2113,2113-2126,2189-2197
1w8x d1w8xc_ C:63-80,95-104,107-113,113-126,188-197
4. b.121.2 Group II dsDNA viruses VP duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits ! trimeric; in the trimers, the domains are arranged around pseudo six-fold axis !
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1hqn d1hqnc2 C:282-294,302-311,314-320,320-333,357-365
1cjd d1cjda2 A:282-294,302-311,314-320,320-333,357-366
1hqn d1hqna2 A:282-294,302-311,314-320,320-333,357-366
1hx6 d1hx6a1 A:63-80,95-104,107-113,113-126,189-197
1cjd d1cjda1 A:63-80,95-104,107-113,113-126,189-197
1cjd d1cjdc1 C:63-80,95-104,107-113,113-126,189-197
1cjd d1cjdb1 B:63-80,95-104,107-113,113-126,189-197
1hqn d1hqna1 A:63-80,95-104,107-113,113-126,189-197
1hqn d1hqnc1 C:63-80,95-104,107-113,113-126,189-197
1hx6 d1hx6c1 C:63-80,95-104,107-113,113-126,189-197
1hx6 d1hx6b1 B:63-80,95-104,107-113,113-126,189-197
5. b.29.1 Concanavalin A-like lectins/glucanases
Concanavalin A-like lectins/glucanases sandwich; 12-14 strands in 2 sheets; complex topology
2bwa d2bwab1 B:83-96,99-111,120-129,179-191,197-210
2bw8 d2bw8b1 B:83-95,99-111,120-129,179-191,197-210
1h0b d1h0bb_ B:83-95,99-111,120-129,179-191,197-210
2bw8 d2bw8a1 A:83-95,99-111,120-129,179-191,197-210
1h0b d1h0ba_ A:83-95,99-111,120-129,179-191,197-210
2bwc d2bwcb1 B:84-95,99-111,120-129,179-191,197-210
2bwa d2bwaa1 A:84-95,99-111,120-129,179-191,197-210
2bwc d2bwca1 A:84-96,99-111,120-129,179-191,197-210
1oa4 d1oa4a_ A:83-93,97-109,118-129,175-187,193-206
2nlr d2nlra_ A:83-93,97-109,118-125,175-187,193-206
1nlr d1nlra_ A:83-94,97-109,118-129,175-187,193-206
1ikq d1ikqa1 A:23-30,40-52,96-106,138-148,162-178
1ikp d1ikpa1 A:23-30,40-52,96-106,138-148,162-178
2dcy d2dcyd1 D:49-56,61-74,75-87,145-157,161-175
2dcy d2dcye1 E:49-56,61-74,75-87,145-157,162-175
1w2u d1w2ua_ A:82-92,96-108,118-125,176-189,195-208
1olr d1olra_ A:82-92,96-108,118-129,176-189,195-208
1ks4 d1ks4a_ A:78-89,92-104,114-121,176-188,194-207
1ks5 d1ks5a_ A:78-89,92-104,114-121,176-188,194-207
1oa2 d1oa2c_ C:78-91,91-104,114-121,171-184,190-202
1oa3 d1oa3d_ D:78-91,91-104,114-121,171-184,190-202
1h8v d1h8ve_ E:78-91,91-104,114-121,171-184,190-202
1oa3 d1oa3c_ C:78-91,91-104,114-121,171-184,190-202
1oa2 d1oa2d_ D:78-91,91-104,114-125,171-184,190-202
1oa2 d1oa2a_ A:78-91,91-104,114-121,171-184,190-202
1olq d1olqb_ B:78-91,91-104,114-121,171-184,190-202
1oa2 d1oa2e_ E:78-91,91-104,114-125,171-184,190-202
1oa2 d1oa2b_ B:78-91,91-104,114-125,171-184,190-202
1h8v d1h8va_ A:78-91,91-104,114-121,171-184,190-202
1olq d1olqa_ A:78-91,91-104,114-121,171-184,190-202
1h8v d1h8vc_ C:78-91,91-104,114-125,171-184,190-202
1oa3 d1oa3a_ A:78-91,91-104,114-125,171-184,190-202
1oa3 d1oa3b_ B:78-91,91-104,114-125,171-184,190-202
1h8v d1h8vf_ F:78-91,91-104,114-121,171-184,190-202
1oa2 d1oa2f_ F:78-91,91-104,114-125,171-184,190-202
1h8v d1h8vd_ D:78-91,91-104,114-125,171-184,190-202
1h8v d1h8vb_ B:78-91,91-104,114-125,171-184,190-203
6. b.8.1 TRAF domain-like has a circularly permuted immunoglobulin-fold topology with extra strand !
TRAF domain-like sandwich; 8 strands in 2 sheets; greek-key
2an6 d2an6a1 A:203-212,221-230,231-240,246-254,271-281
1k2f d1k2fa_ A:201-212,221-230,231-240,246-254,271-281
7. b.112.1 C-terminal domain of mollusc hemocyanin analogous to the Ig-like domain of arthropod hemocyanin; similar sequential but different spatial position relative the shared domain !
C-terminal domain of mollusc hemocyanin six-stranded beta-sandwich, jelly-roll/greek-key topology
1lnl d1lnlc2 C:305-313,318-330,332-346,361-369,375-385
1lnl d1lnlb2 B:305-313,319-330,335-344,361-369,375-385
8. d.94.1 HPr-like
HPr-like beta-alpha-beta(2)-alpha-beta-alpha; 2 layers: a/b; antiparallel sheet 1423
2ak7 d2ak7a1 A:11-15,31-38,39-44,46-54,58-67
2ak7 d2ak7b1 B:11-15,31-38,39-44,46-54,58-67
1mo1 d1mo1c_ C:11-15,31-38,39-44,46-54,58-67
1mo1 d1mo1a_ A:11-15,31-38,39-44,46-54,58-67
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 451 (enumeration index: query544) of S5
3b7m A:77-86,90-102,112-123,170-182,188-201
3b7m B:77-86,90-102,112-123,170-182,188-201
3b7m C:77-86,90-102,112-123,170-182,188-201
3b7m D:77-86,90-102,112-123,170-182,188-201
3foa A:98-104,112-121,122-133,146-158,166-172
3hlk A:81-87,90-103,105-119,138-146,163-173
3hlk B:81-87,90-103,105-120,138-146,163-173
2xwx B:210-219,226-235,244-250,256-272,302-312
3l6w B:3207-3215,3221-3231,3236-3247,3264-3272,3280-3288
3ela T:19-26,31-41,42-49,58-67,70-80
2foj A:113-122,130-142,148-159,172-179,187-202
2jem A:117-129,129-142,153-160,214-227,233-246
2jem B:117-129,129-142,153-160,214-227,233-246
3foi A:98-104,112-121,122-133,146-158,166-172
3foi F:98-104,112-121,122-133,146-158,166-172
3foi D:98-104,112-121,122-133,146-158,166-172
3foi E:98-104,112-121,122-133,146-158,166-172
3foi C:98-104,112-121,122-133,146-158,166-172
3foi B:98-104,112-121,122-133,146-158,166-172
1zde A:73-79,83-87,89-93,93-101,163-169
2vtf B:545-552,556-565,568-575,582-591,591-602
2dcz A:49-56,61-74,75-87,145-157,162-175
2dcz B:50-56,61-74,75-87,145-157,162-175
2qz3 A:49-56,61-74,75-86,145-157,162-175
3no0 A:504-509,530-536,538-544,545-552,562-569
3no0 A:517-527,530-536,538-544,545-552,562-569
2keq A:63-69,72-77,79-83,83-91,132-137
2jen A:117-129,129-142,153-160,214-227,233-246
3m4f C:73-83,86-97,100-107,167-179,183-195
2zzu T:19-26,32-41,42-49,58-67,70-79
3k2i A:19-25,28-41,43-56,76-84,101-111
3k2i B:19-25,28-41,43-56,76-84,101-111
3hd8 B:49-56,62-74,75-87,145-157,162-175
3foh A:98-104,112-121,122-133,146-158,166-172
3foh F:98-104,112-121,122-133,146-158,166-172
3foh D:98-104,112-121,122-133,146-158,166-172
3foh E:98-104,112-121,122-133,146-158,166-172
3foh C:98-104,112-121,122-133,146-158,166-172
3foh B:98-104,112-121,122-133,146-158,166-172
1zd7 B:63-69,72-77,79-83,83-91,154-159
1zd7 A:63-69,73-77,79-83,83-91,154-159
3qjo B:3207-3215,3222-3233,3234-3246,3264-3272,3281-3288
3qjo A:3207-3215,3221-3233,3234-3247,3264-3272,3281-3288
2zwl T:19-26,32-41,42-49,58-67,70-79
2ec9 T:19-26,31-41,42-49,58-67,70-80
2c4f T:19-26,31-41,42-49,58-67,70-80
2puq T:19-27,31-41,42-53,58-67,70-80