1.   d.3.1         Cysteine proteinases  the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet !   
                   Cysteine proteinases consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
                   1tff  d1tffa_  A:8-14,39-46,48-65,114-125,223-230

2.   d.14.1        Ribosomal protein S5 domain 2-like    
                   Ribosomal protein S5 domain 2-like core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
                   1fi4  d1fi4a1  A:12-18,32-39,141-154,153-162,163-170

3.   d.219.1       PP2C-like  contain binuclear metal (Mn) centre !   
                   PP2C-like 4 layers: alpha/beta/beta/alpha; antiparallel beta sheets
                   1a6q  d1a6qa2  A:12-19,21-32,246-262,263-279,281-292

4.   d.58.48       MTH1187/YkoF-like    
                   Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
                   1sbr  d1sbrb_  B:10-20,75-85,128-144,159-179,180-190
                   1s7h  d1s7hb_  B:11-20,75-85,128-144,159-179,180-190
                   1s99  d1s99a_  A:11-20,75-85,128-144,159-179,180-190
                   1sbr  d1sbra_  A:11-20,75-85,128-144,159-179,180-190
                   1s7h  d1s7ha_  A:11-20,75-85,128-144,159-179,180-190
                   1s7h  d1s7hd_  D:11-20,75-85,128-144,159-179,180-190

5.   d.97.1        Cell cycle regulatory proteins    
                   Cell cycle regulatory proteins beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1243 ! can form strand-exchange dimers
                   1dkt  d1dktb_  B:5-10,16-25,25-33,39-47,65-73

List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 653 (enumeration index: query550) of S5

3fxl  A:12-19,21-32,246-262,263-279,281-292
3fxo  A:12-20,21-32,246-262,263-279,281-292
3mq3  A:21-27,37-48,354-368,406-416,445-455
2hke  B:12-18,34-41,135-145,144-153,154-161
2hke  A:12-18,34-41,135-145,144-153,154-161
3fxk  A:12-20,21-32,246-262,263-279,281-292
3d4j  A:16-22,36-43,148-157,156-165,166-173
3d4j  B:16-22,36-43,148-157,156-165,166-173
3n3c  A:21-27,37-48,354-368,406-416,445-455
2isn  B:3-11,12-23,286-302,304-320,322-333
2isn  A:3-11,12-23,286-302,304-320,322-333
2deu  A:129-136,137-144,151-159,159-167,352-361
2det  A:130-136,137-143,151-159,159-167,352-361
3f0n  A:16-22,36-43,147-157,156-165,166-173
3f0n  B:16-22,36-43,147-157,156-165,166-173
3pxp  A:110-116,118-125,134-145,149-156,279-283
3pxp  C:110-116,118-125,134-145,149-156,279-283
3lto  A:18-23,38-43,143-156,155-164,165-171
3lto  B:16-23,38-45,143-156,155-164,165-171
2pnq  A:22-27,37-48,354-368,406-417,445-455
2pnq  B:22-27,37-48,354-368,406-417,445-455
2p8e  B:8-19,22-32,250-266,267-283,285-295
2p8e  A:8-19,22-32,250-266,267-283,285-295
2zfy  A:47-53,80-86,90-108,154-165,264-271
3iyl  W:43-48,57-62,71-78,80-104,176-180
2i0o  A:9-20,21-32,525-537,543-556,569-578
3fxm  A:12-20,21-32,246-262,263-279,281-292
3fxj  A:12-20,21-32,246-262,263-279,281-291
2gs8  A:13-21,31-38,127-140,139-148,149-156
1s99  B:11-20,75-85,128-144,159-179,180-190