1. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
1z7q d1z7qn1 N:10-17,48-56,111-121,123-132,161-168
1jd2 d1jd2m_ M:2-9,40-48,96-105A,106-115,141C-146
1g0u d1g0u1_ 1:2-9,40-48,96-105A,106-115,141C-146
1jd2 d1jd2t_ T:2-9,40-48,96-105A,106-115,141C-146
2f16 d2f16m1 M:2-9,40-48,96-10A,106-115,14C-147
2f16 d2f1611 1:2-9,40-48,96-10A,106-115,14C-147
1g65 d1g65m_ M:2-9,40-48,96-105A,106-115,141C-147
2gpl d2gpl11 1:2-9,40-48,96-10A,106-115,14C-147
2gpl d2gplm1 M:2-9,40-48,97-10A,106-115,14C-147
1g65 d1g651_ 1:2-9,40-48,96-105A,106-115,141C-147
1ryp d1rypn_ N:2-9,40-48,103-113,115-124,153-161
2fak d2fakm1 M:2-9,40-48,96-10A,106-115,14C-147
2fak d2fak11 1:2-9,40-48,96-10A,106-115,14C-147
3d29 d3d29m1 M:2-9,40-48,96-10A,106-115,14C-147
2zcy d2zcy01 0:2-9,40-48,96-10A,106-115,14C-147
2zcy d2zcym1 M:2-9,40-48,96-10A,106-115,14C-147
3d29 d3d2911 1:2-9,40-48,97-10A,106-115,14C-147
3e47 d3e47m1 M:2-9,40-48,96-10A,106-115,14C-147
1g0u d1g0um_ M:2-9,40-48,96-105A,106-115,141C-147
3bdm d3bdmm1 M:2-9,40-48,96-10A,106-115,14C-147
3e47 d3e4711 1:2-9,40-48,96-10A,106-115,14C-147
3bdm d3bdm01 0:2-9,40-48,96-10A,106-115,14C-147
1ryp d1ryp2_ 2:2-9,40-48,103-113,115-124,153-161
2. c.69.1 alpha/beta-Hydrolases many members have left-handed crossover connection between strand 8 and additional strand 9 !
alpha/beta-Hydrolases core: 3 layers, a/b/a; mixed beta-sheet of 8 strands, order 12435678, strand 2 is antiparallel to the rest
1jmy d1jmya_ A:10-14,24-35,81-91,136-142,161-182
1f6w d1f6wa_ A:10-14,24-35,81-91,136-142,161-182
1aql d1aqla_ A:10-14,24-35,81-91,136-142,161-182
1e3q d1e3qa_ A:12-17,24-35,95-102,141-147,167-188
2j3d d2j3da1 A:12-17,24-35,95-102,141-147,167-188
1gqs d1gqsa_ A:12-17,24-35,95-102,141-147,167-188
2v97 d2v97b1 B:12-17,24-35,95-102,141-147,167-188
1cfj d1cfja_ A:12-17,24-35,95-102,141-147,167-188
2v96 d2v96b1 B:12-17,24-35,95-103,141-147,167-188
2v96 d2v96a1 A:12-17,24-35,95-102,141-147,167-188
1qon d1qona_ A:11-16,23-34,94-102,173-179,205-226
1dx4 d1dx4a_ A:11-16,23-34,94-102,173-179,205-226
1qo9 d1qo9a_ A:11-16,23-34,94-102,173-179,205-226
3. b.60.1 Lipocalins bind hydrophobic ligands in their interior !
Lipocalins barrel, closed or opened; n=8, S=12; meander
1qwd d1qwda_ A:13-18,112-123,126-133,137-143,148-163
1qwd d1qwdb_ B:13-18,113-123,126-133,137-143,148-163
4. c.7.1 PFL-like glycyl radical enzymes duplication: the N- and C-terminal halves have similar topologies !
PFL-like glycyl radical enzymes contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel
1h18 d1h18b_ B:273-278,413-418,420-425,426-437,507-515
1h17 d1h17a_ A:273-278,413-418,420-425,426-437,507-515
1h16 d1h16a_ A:273-278,413-418,420-425,426-437,507-515
2pfl d2pfla_ A:273-278,413-418,420-425,426-437,507-515
1h18 d1h18a_ A:273-278,413-418,420-425,426-437,507-515
1cm5 d1cm5b_ B:273-278,413-418,420-425,426-437,507-515
1cm5 d1cm5a_ A:273-278,413-418,420-425,426-437,507-515
5. d.101.1 Ribonuclease PH domain 2-like
Ribonuclease PH domain 2-like beta(2)-alpha-beta(2)-alpha; 3 layers: alpha/beta/alpha; antiparallel sheet: order 2134
2c39 d2c39x2 X:26-36,161-167,186-196,197-207,210-239
2c38 d2c38l2 L:26-30,161-170,186-196,197-206,210-239
2c38 d2c38x2 X:26-30,161-170,186-196,197-206,210-239
2c38 d2c38n2 N:26-30,161-170,186-196,197-206,210-239
2c38 d2c38f2 F:26-30,161-170,186-196,197-206,210-239
2c38 d2c38r2 R:26-30,161-170,186-196,197-206,210-239
2c38 d2c38t2 T:26-30,161-170,186-196,197-206,210-239
2c38 d2c38h2 H:26-30,161-170,186-196,197-206,210-239
2c38 d2c38j2 J:26-30,161-170,186-196,197-206,210-239
2c38 d2c38d2 D:26-30,161-170,186-196,197-206,210-239
2c38 d2c38b2 B:26-30,161-170,186-196,197-206,210-239
2c38 d2c38p2 P:26-30,161-170,186-196,197-206,210-239
1e3p d1e3pa6 A:17-27,156-165,180-192,194-206,232-251
2br2 d2br2f2 F:26-36,161-170,186-196,197-207,210-239
2br2 d2br2n2 N:26-36,161-170,186-196,197-207,210-239
2br2 d2br2b2 B:26-36,161-170,186-196,197-207,210-239
2br2 d2br2r2 R:26-36,161-170,186-196,197-207,210-239
2br2 d2br2j2 J:26-36,161-170,186-196,197-207,210-239
2br2 d2br2t2 T:26-36,161-170,186-196,197-207,210-239
2br2 d2br2v2 V:26-36,161-170,186-196,197-207,210-239
2br2 d2br2h2 H:26-36,161-170,186-196,197-207,210-239
2br2 d2br2x2 X:26-36,161-170,186-196,197-207,210-239
2br2 d2br2d2 D:26-36,161-170,186-196,197-207,210-239
2br2 d2br2p2 P:26-36,161-170,186-196,197-207,210-239
2br2 d2br2l2 L:26-36,161-170,186-196,197-207,210-239
1e3h d1e3ha5 A:17-27,156-165,180-192,194-206,221-251
2c39 d2c39r2 R:26-36,161-170,186-196,197-206,210-239
2c39 d2c39d2 D:26-36,161-170,186-196,197-206,210-239
2c39 d2c39p2 P:26-36,161-170,186-196,197-206,210-239
2c39 d2c39f2 F:26-36,161-170,186-196,197-206,210-239
2c39 d2c39t2 T:26-36,161-170,186-196,197-206,210-239
2c39 d2c39l2 L:26-36,161-170,186-196,197-206,210-239
2c39 d2c39j2 J:26-36,161-170,186-196,197-206,210-239
2c39 d2c39n2 N:26-36,161-170,185-196,197-206,210-239
2c37 d2c37h2 H:26-36,161-170,186-196,197-206,210-239
2c37 d2c37b2 B:26-36,161-170,186-196,197-206,210-239
2c37 d2c37n2 N:26-36,161-170,186-196,197-206,210-239
2c39 d2c39b2 B:26-36,161-170,185-196,197-206,210-239
2c37 d2c37j2 J:26-36,161-170,186-196,197-206,210-239
2c37 d2c37r2 R:26-36,161-170,186-196,197-206,210-239
2c37 d2c37x2 X:26-36,161-170,186-196,197-206,210-239
2c37 d2c37f2 F:26-36,161-170,186-196,197-206,210-239
2c37 d2c37v2 V:26-36,161-170,186-196,197-206,210-239
2c37 d2c37p2 P:26-36,161-170,186-196,197-206,210-239
2c37 d2c37l2 L:26-36,161-170,186-196,197-206,210-239
2c37 d2c37d2 D:26-36,161-170,186-196,197-206,210-239
2c37 d2c37t2 T:26-36,161-170,186-196,197-206,210-239
2c39 d2c39v2 V:27-36,161-170,186-196,197-206,210-239
2c38 d2c38l2 L:29-36,161-170,186-196,197-206,210-239
2c38 d2c38f2 F:29-36,161-170,186-196,197-206,210-239
2c38 d2c38v2 V:29-36,161-170,186-196,197-206,210-239
2c38 d2c38x2 X:29-36,161-170,186-196,197-206,210-239
2c38 d2c38d2 D:29-36,161-170,186-196,197-206,210-239
2c38 d2c38b2 B:29-36,161-170,186-196,197-206,210-239
2c38 d2c38h2 H:29-36,161-170,186-196,197-206,210-239
2c38 d2c38n2 N:29-36,161-170,186-196,197-206,210-239
2c38 d2c38j2 J:29-36,161-170,186-196,197-206,210-239
2c38 d2c38t2 T:29-36,161-170,186-196,197-206,210-239
2c38 d2c38p2 P:29-36,161-170,186-196,197-206,210-239
2c38 d2c38r2 R:29-36,161-170,186-196,197-206,210-239
6. b.30.5 Galactose mutarotase-like probable carbohydrate-binding domain in enzymes acting on sugars !
Supersandwich sandwich; 18 strands in 2 sheets
3bui d3buia2 A:562-574,762-770,773-781,887-899,915-928
3buq d3buqa2 A:562-574,762-770,773-781,887-899,915-928
3bup d3bupa2 A:562-574,762-770,773-781,887-899,915-928
3d4z d3d4za2 A:562-574,762-770,773-781,887-899,915-928
3bub d3buba2 A:562-574,762-770,773-781,887-899,915-928
1tqu d1tqua2 A:562-574,762-770,773-781,887-899,915-928
3d52 d3d52a2 A:562-574,762-770,773-781,887-899,915-928
3d51 d3d51a2 A:562-574,762-770,773-781,887-899,915-928
3bvw d3bvwa2 A:562-574,762-770,773-781,887-899,915-928
1hxk d1hxka2 A:562-574,762-770,773-781,887-899,915-928
3czs d3czsa2 A:562-574,762-770,773-781,887-899,915-928
2f7p d2f7pa2 A:562-574,762-770,773-781,887-899,915-928
3d50 d3d50a2 A:562-574,762-770,773-781,887-899,915-928
2alw d2alwa2 A:562-574,762-770,773-781,887-899,915-928
3bvx d3bvxa2 A:562-574,762-770,773-781,887-899,915-928
2f7q d2f7qa2 A:562-574,762-770,773-781,887-899,915-928
1hty d1htya2 A:562-574,762-770,773-781,887-899,915-928
1hww d1hwwa2 A:562-574,762-770,773-781,887-899,915-928
3czn d3czna2 A:562-574,762-770,773-781,887-899,915-928
3blb d3blba2 A:562-574,762-770,773-781,887-899,915-928
2f7o d2f7oa2 A:562-574,762-770,773-781,887-899,915-928
3cv5 d3cv5a2 A:562-574,762-770,773-781,887-899,915-928
2ow7 d2ow7a2 A:562-574,762-770,773-781,887-899,915-928
1qwn d1qwna2 A:562-574,762-770,773-781,887-899,915-928
3ddf d3ddfa2 A:562-574,762-770,773-781,887-899,915-928
1tqs d1tqsa2 A:562-574,762-770,773-781,887-899,915-928
1qx1 d1qx1a2 A:562-574,762-770,773-781,887-899,915-928
1r34 d1r34a2 A:562-574,762-770,773-781,887-899,915-928
1r33 d1r33a2 A:562-574,762-770,773-781,887-899,915-928
3d4y d3d4ya2 A:562-574,762-770,773-781,887-899,915-928
1tqv d1tqva2 A:562-574,762-770,773-781,887-899,915-928
1qwu d1qwua2 A:562-574,762-770,773-781,887-899,915-928
1tqw d1tqwa2 A:562-574,762-770,773-781,887-899,915-928
1tqt d1tqta2 A:562-574,762-770,773-781,887-899,915-928
2f7r d2f7ra2 A:562-575,762-770,773-781,887-899,915-928
3bud d3buda2 A:562-574,762-770,773-781,887-899,915-928
3bvt d3bvta2 A:562-574,762-770,773-781,887-899,915-928
2f1a d2f1aa2 A:562-574,762-770,773-781,887-899,915-928
2ow6 d2ow6a2 A:562-574,762-770,773-781,887-899,915-928
3bvu d3bvua2 A:562-574,762-770,773-781,887-899,915-928
3ddg d3ddga2 A:562-574,762-770,773-781,887-899,915-928
2f1b d2f1ba2 A:562-574,762-770,773-781,887-899,915-928
3bvv d3bvva2 A:562-574,762-770,773-781,887-899,915-928
2f18 d2f18a2 A:562-574,762-770,773-781,887-899,915-928
2fyv d2fyva2 A:562-574,762-770,773-781,887-899,915-928
1ps3 d1ps3a2 A:562-574,762-770,773-781,887-899,915-928
7. b.55.1 PH domain-like
PH domain-like barrel barrel, partly opened; n*=6, S*=12; meander; capped by an alpha-helix
1gg3 d1gg3c2 C:52-56,189-197,199-208,209-216,260-279
1gg3 d1gg3a2 A:52-56,189-197,199-208,209-215,260-279
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 337 (enumeration index: query59) of S5
3eju A:562-574,762-770,773-781,887-899,915-928
3ejt A:562-574,762-770,773-781,887-899,915-928
3oev 1:2-9,40-48,96-105A,106-115,141C-147
3oev M:2-9,40-48,96-105A,106-115,141C-147
3gpw M:2-9,40-48,96-10A,106-115,14C-147
3gpw 1:2-9,40-48,96-10A,106-115,14C-147
2zbb D:162-172,212-219,221-227,232-236,240-252
3tdd 1:2-9,40-48,96-10A,106-115,14C-147
3tdd M:2-9,40-48,96-10A,106-115,14C-147
3dx2 A:562-574,762-770,773-781,887-899,915-928
2vdu D:17-24,356-364,365-372,383-391,399-415
2vdu B:17-24,356-364,365-372,383-391,399-415
3ejs A:562-574,762-770,773-781,887-899,915-928
3ejp A:562-574,762-770,773-781,887-899,915-928
3okj 1:2-9,40-45,99-10A,106-115,14C-147
3okj M:2-9,40-48,96-10A,106-115,14C-147
3fgw A:248-257,323-331,380-388,402-410,418-426
3dy4 1:2-9,40-48,96-10A,106-115,14C-147
3dy4 M:2-9,40-48,96-10A,106-115,14C-147
3f6k A:290-298,326-334,339-348,352-362,662-672
3dx3 A:562-574,762-770,773-781,887-899,915-928
3fgr B:249-257,323-331,380-388,402-410,418-426
3mg0 M:2-9,40-48,96-10A,106-115,14C-147
3mg0 1:2-9,40-48,97-10A,106-115,14C-147
3fbx A:249-257,323-331,380-388,402-410,418-426
3dx0 A:562-574,762-770,773-781,887-899,915-928
3gpt M:2-9,40-48,96-10A,106-115,14C-147
3gpt 1:2-9,40-48,96-10A,106-115,14C-147
2wil B:10-15,22-33,93-101,139-145,165-186
2wil A:10-15,22-33,93-101,139-145,165-186
3dx4 A:562-574,762-770,773-781,887-899,915-928
3pzd A:1750-1755,1955-1962,1969-1977,1978-1985,2025-2047
3gpj M:2-9,40-48,96-10A,106-115,14C-147
3gpj 1:2-9,40-48,96-10A,106-115,14C-147
2j4c A:10-15,22-33,93-101,139-145,165-186
3dy3 1:2-9,40-48,96-10A,106-115,14C-147
3dy3 M:2-9,40-48,96-10A,106-115,14C-147
3ejr A:562-574,762-770,773-781,887-899,915-928
3gcm B:323-332,461-472,489-499,500-510,515-542
3gcm A:323-332,461-472,489-499,500-510,515-542
3gcm C:323-332,461-472,489-499,500-510,515-542
3qpb N:14-18,41-51,52-61,62-71,73-88
3qpb C:14-18,41-51,52-61,62-71,73-88
3qpb L:14-18,41-51,52-61,62-71,73-88
3nzx M:2-9,40-48,96-10A,106-115,14C-147
3nzx 1:2-9,40-48,96-10A,106-115,14C-147
1fnt B:2-9,40-48,103-113,115-124,153-160
1fnt N:2-9,40-48,103-113,115-124,153-160
3hye M:2-9,40-48,96-10A,106-115,14C-147
3hye 1:2-9,40-48,96-10A,106-115,14C-147
3au5 B:1750-1755,1955-1961,1969-1977,1978-1985,2025-2048
3lp9 B:16-23,175-180,184-191,192-200,218-227
3mg4 M:2-9,40-48,96-105A,106-115,141C-147
3nzw M:2-9,40-48,96-10A,106-115,14C-147
3nzw 1:2-9,40-48,96-10A,106-115,14C-147
3nzj 1:2-9,40-48,96-10A,106-115,14C-147
3nzj M:2-9,40-48,96-10A,106-115,14C-147
3oeu M:2-9,40-48,96-105A,106-115,141C-147
3oeu 1:2-9,40-48,96-105A,106-115,141C-147
1vsy 2:7002-7009,7040-7048,7104-7113,7115-7124,7153-7161
1vsy N:7002-7009,7040-7048,7104-7113,7115-7124,7153-7161
2aco B:13-18,112-123,126-133,137-143,148-163
2aco A:13-18,112-123,126-133,137-143,148-163
3mg7 1:2-9,40-48,96-105A,106-115,141C-147
3mg7 M:2-9,40-48,96-105A,106-115,141C-147
3ejq A:562-574,762-770,773-781,887-899,915-928
3gme A:323-332,461-472,489-499,500-510,515-542
3l5q R:7002-7009,7040-7048,7104-7113,7115-7124,7153-7161
3l5q 4:7002-7009,7040-7048,7103-7113,7115-7124,7153-7161
3mg6 1:2-9,40-48,96-105A,106-115,141C-147
3mg6 M:2-9,40-48,96-105A,106-115,141C-147
3mg8 1:2-9,40-48,97-105A,106-115,141C-147
3mg8 M:2-9,40-48,96-105A,106-115,141C-147
3fgt B:249-257,323-331,380-388,402-410,417-426
3h1c X:323-332,461-472,490-499,500-510,515-542
3h1c M:323-332,461-472,489-499,500-510,515-542
3h1c C:323-332,461-472,489-499,500-510,515-542
3h1c A:323-332,461-472,489-499,500-510,515-542
3h1c T:323-332,461-472,489-499,500-510,515-542
3h1c K:323-332,461-472,490-499,500-510,515-542
3h1c V:323-332,461-472,489-499,500-510,515-542
3h1c O:323-332,461-472,490-499,500-510,515-542
3h1c G:323-332,461-472,490-499,500-510,515-542
3h1c R:323-332,461-472,490-499,500-510,515-542
3h1c I:323-332,461-472,489-499,500-510,515-542
3h1c B:323-332,461-470,490-499,500-510,515-542
3dx1 A:562-574,762-770,773-781,887-899,915-928
2c39 H:26-36,161-168,186-196,197-206,210-239
1z7q B:10-17,48-56,111-121,123-132,161-168