1. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1g29 d1g2922 2:21-27,29-36,41-51,208-215,216-223
3b60 d3b60a1 A:358-368,369-377,381-391,546-553,554-561
3b60 d3b60b1 B:358-368,369-377,381-391,546-553,554-561
3b60 d3b60d1 D:358-368,369-377,381-391,546-553,554-561
3b60 d3b60c1 C:358-368,369-377,381-391,546-553,554-561
1mv5 d1mv5b_ B:1361-1367,1370-1376,1381-1391,1546-1553,1554-1561
1jj7 d1jj7a_ A:519-530,532-538,543-553,710-717,718-725
1xmj d1xmja_ A:440-449,451-459,463-473,614-621,622-629
3b5y d3b5yd1 D:360-368,369-377,381-391,546-553,554-561
3b5y d3b5yc1 C:360-368,369-377,381-391,546-553,554-561
3b5y d3b5ya1 A:360-368,369-377,381-391,546-553,554-561
3b5y d3b5yb1 B:360-368,369-377,381-391,546-553,554-561
1l2t d1l2tb_ B:1023-1029,1031-1038,1043-1053,1213-1220,1221-1229
1l2t d1l2ta_ A:23-29,31-38,43-53,213-220,221-229
1l7v d1l7vd_ D:16-25,26-33,38-48,201-208,209-216
1l7v d1l7vc_ C:16-25,26-33,38-48,201-208,209-216
3d31 d3d31b2 B:13-24,27-33,35-48,196-203,204-211
3d31 d3d31a2 A:13-24,27-33,35-48,196-203,204-211
1vpl d1vpla_ A:21-27,29-36,41-51,202-209,210-217
1g9x d1g9xc_ C:2025-2032,2034-2040,2045-2055,2221-2228,2229-2237
1r10 d1r10b_ B:438-449,451-459,463-473,614-621,622-629
1vci d1vcia3 A:30-38,39-45,50-60,211-218,219-226
1v43 d1v43a3 A:30-38,39-45,50-60,211-218,219-226
1q1e d1q1ea2 A:21-26,29-36,41-51,202-209,210-217
1q1e d1q1eb2 B:21-26,29-36,41-51,202-209,210-217
1r0y d1r0yc_ C:438-450,451-459,463-473,614-621,622-629
1r0w d1r0wc_ C:438-450,451-459,463-473,614-621,622-629
1r0x d1r0xd_ D:438-450,451-459,463-473,614-621,622-629
1r0y d1r0ya_ A:438-450,451-459,463-473,614-621,622-629
1r0x d1r0xa_ A:438-450,451-459,463-473,614-621,622-629
1r0w d1r0wb_ B:438-450,451-459,463-473,614-621,622-629
1q1b d1q1bd2 D:21-26,29-36,41-51,202-209,210-217
1r0y d1r0yb_ B:438-450,451-459,463-473,614-621,622-629
1q1b d1q1bb2 B:20-26,29-36,41-51,202-209,210-217
1q3h d1q3ha_ A:438-450,451-459,463-473,614-621,622-629
1xf9 d1xf9a_ A:438-450,451-459,463-473,614-621,622-629
1g6h d1g6ha_ A:26-32,34-40,45-55,221-228,229-237
1oxv d1oxvd2 D:17-31,32-38,43-53,209-216,217-224
1q1b d1q1bc2 C:21-26,29-36,41-51,202-209,210-217
1mv5 d1mv5c_ C:2357-2367,2369-2376,2381-2391,2546-2553,2554-2561
2ff7 d2ff7a1 A:483-494,495-502,507-517,671-678,679-686
1mt0 d1mt0a_ A:487-493,495-502,507-517,671-678,679-686
3dhw d3dhwc1 C:15-29,32-39,42-53,209-216,217-225
1q1b d1q1ba2 A:21-26,29-36,41-51,202-209,210-217
2awo d2awoc2 C:21-28,29-36,41-51,202-209,210-217
1oxt d1oxtb2 B:23-31,32-38,43-53,209-216,217-224
2onk d2onka1 A:13-23,25-31,36-46,195-202,203-210
2awo d2awod2 D:21-28,29-36,41-51,202-209,210-217
1q12 d1q12a2 A:21-26,29-36,41-51,202-209,210-217
1q12 d1q12c2 C:21-26,29-36,41-51,202-209,210-217
1g9x d1g9xa_ A:19-32,34-40,45-55,221-228,229-237
2awo d2awoa2 A:21-28,29-36,41-51,202-209,210-217
1q12 d1q12d2 D:15-26,29-36,41-51,202-209,210-217
1q12 d1q12b2 B:15-26,29-36,41-51,202-209,210-217
2awo d2awob2 B:21-28,29-36,41-51,202-209,210-217
2awn d2awna2 A:21-28,29-36,41-51,202-209,210-217
2onj d2onjb1 B:359-366,367-374,379-389,543-550,551-558
2onj d2onja1 A:359-366,367-374,379-389,543-550,551-558
2hyd d2hyda1 A:359-366,367-374,379-389,543-550,551-558
2hyd d2hydb1 B:359-366,367-374,379-389,543-550,551-558
1g29 d1g2912 1:22-27,29-36,41-51,208-215,216-223
1b0u d1b0ua_ A:18-30,32-39,44-54,221-228,229-236
3b5y d3b5yb1 B:357-361,369-377,381-391,546-553,554-561
3b5y d3b5yc1 C:357-361,369-377,381-391,546-553,554-561
3b5y d3b5yd1 D:357-361,369-377,381-391,546-553,554-561
3b5y d3b5ya1 A:357-361,369-377,381-391,546-553,554-561
1g9x d1g9xb_ B:1019-1032,1034-1040,1045-1055,1221-1228,1229-1237
1r0w d1r0wa_ A:443-450,451-459,463-473,614-621,622-629
2r6g d2r6ga2 A:15-28,29-36,41-51,202-209,210-217
2awn d2awnb2 B:21-28,29-36,41-51,202-209,210-217
3dhw d3dhwd1 D:24-29,32-39,43-53,209-216,217-225
1f3o d1f3oa_ A:15-29,32-38,43-53,213-220,221-229
2r6g d2r6gb2 B:22-28,29-36,41-51,202-209,210-217
1ji0 d1ji0a_ A:17-30,31-38,43-53,206-213,214-221
1mv5 d1mv5d_ D:3362-3367,3369-3376,3381-3391,3546-3553,3554-3561
2pmk d2pmka1 A:488-494,495-502,507-517,671-678,679-686
3b5z d3b5za1 A:360-368,369-376,381-391,546-553,554-561
3b5z d3b5zb1 B:360-368,369-376,381-391,546-553,554-561
3b5z d3b5zd1 D:360-368,369-376,381-391,546-553,554-561
3b5z d3b5zc1 C:360-368,369-376,381-391,546-553,554-561
1mv5 d1mv5a_ A:362-367,369-376,381-391,546-553,554-561
1oh5 d1oh5a2 A:598-605,608-614,619-637,741-748,761-765
2awn d2awnd2 D:22-28,29-36,41-51,202-209,210-217
1oh8 d1oh8a2 A:598-605,608-614,619-637,741-748,761-765
1oxv d1oxva2 A:24-30,31-38,43-53,209-216,217-224
1oxt d1oxtd2 D:24-30,31-38,43-53,209-216,217-224
1gaj d1gaja_ A:27-32,33-40,45-55,221-228,229-237
1oxv d1oxvb2 B:24-30,31-38,43-53,209-216,217-224
1oxu d1oxuc2 C:24-30,31-38,43-53,209-216,217-224
1oxu d1oxua2 A:24-30,31-38,43-53,209-216,217-224
1oxt d1oxta2 A:24-30,31-38,43-53,209-216,217-224
3dhw d3dhwh1 H:23-29,31-38,42-53,209-216,217-225
1xfa d1xfaa_ A:444-450,451-459,463-473,614-621,622-629
3dhw d3dhwg1 G:24-29,32-38,42-53,209-216,217-225
1oxu d1oxub2 B:24-30,31-38,43-53,209-216,217-224
2awn d2awnc2 C:22-28,29-36,41-51,202-209,210-217
1ng9 d1ng9a2 A:598-605,608-614,619-637,741-747,762-766
1oxs d1oxsc2 C:24-30,31-38,40-53,209-216,217-224
1oxx d1oxxk2 K:24-31,32-38,40-53,209-216,217-224
2. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
2bcg d2bcgg1 G:87-91,114-121,209-228,326-334,341-349
3cpj d3cpjg1 G:87-91,114-121,209-228,326-334,341-349
1ukv d1ukvg1 G:87-91,114-121,209-228,326-334,341-349
3cph d3cphg1 G:87-91,114-121,209-228,326-334,341-349
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 557 (enumeration index: query599) of S5
2ffa A:483-494,495-502,507-517,671-678,679-686
1z47 B:30-39,41-48,53-63,214-221,222-229
1z47 A:30-40,42-48,53-63,214-221,222-229
3g61 B:404-415,416-426,427-438,592-599,600-607
3g61 B:1048-1058,1060-1066,1068-1081,1237-1244,1245-1251
3g61 A:404-415,416-425,426-438,592-599,600-607
3g61 A:1048-1058,1060-1066,1068-1081,1237-1244,1245-1251
2pzf A:439-443,451-458,463-473,614-621,622-629
2pzf A:444-450,451-458,463-473,614-621,622-629
3qf7 B:15-21,23-30,35-49,840-846,847-851
3puy B:21-28,29-36,41-51,202-209,210-217
3puy A:22-28,29-36,41-51,202-209,210-217
3tuz D:23-29,31-38,43-53,209-216,217-224
3tuz C:24-29,31-38,43-53,209-216,217-224
3tuz G:24-29,32-38,43-53,209-216,217-224
3tuz H:24-29,31-38,43-53,209-216,217-224
2d62 A:24-30,32-39,44-54,211-218,219-226
2q0h B:19-25,27-34,39-49,204-211,212-219
2q0h A:19-25,27-34,39-49,204-211,212-219
2ouk B:19-25,27-34,39-49,204-211,212-219
2ouk D:19-25,27-34,39-49,204-211,212-219
2ouk C:19-25,27-34,39-49,204-211,212-219
2ouk A:19-25,27-34,39-49,204-211,212-219
3pux B:21-28,29-36,41-51,202-209,210-217
3pux A:21-28,29-36,41-51,202-209,210-217
3g5u B:405-415,416-425,426-438,592-599,600-607
3g5u A:1048-1058,1060-1067,1068-1081,1237-1244,1245-1251
3g5u A:405-415,416-425,426-438,592-599,600-607
3g5u B:1048-1058,1060-1067,1068-1081,1237-1244,1245-1251
3nh6 A:608-615,616-623,626-638,792-799,800-807
2bbt A:442-450,451-459,463-473,614-621,622-629
2bbt A:439-443,451-459,463-473,614-621,622-629
3gfo A:24-31,32-39,44-54,210-217,218-225
2ix8 A:1447-1454,1456-1462,1467-1478,1607-1614,1615-1620
2r6f A:16-23,24-31,36-59,553-561,565-574
2r6f B:16-23,24-31,36-59,553-561,565-574
2r6f A:619-629,630-637,642-661,895-900,908-916
2r6f B:619-629,630-637,642-661,895-900,908-916
2o8c B:1110-1116,1128-1134,1139-1157,1262-1268,1288-1292
2o5v A:19-24,27-33,38-52,335-342,343-348
2d2f A:15-28,29-36,41-51,212-219,220-227
2olk B:19-25,27-34,39-49,204-211,212-219
2olk D:19-25,27-34,39-49,204-211,212-219
2olk A:19-25,27-34,39-49,204-211,212-219
2olk C:19-25,27-34,39-49,204-211,212-219
3gd7 C:1225-1236,1237-1244,1249-1259,1411-1418,1419-1425
3gd7 B:1228-1236,1237-1244,1249-1259,1411-1418,1419-1426
3gd7 D:1229-1236,1237-1244,1249-1259,1411-1418,1419-1426
3gd7 A:1225-1236,1237-1244,1249-1259,1411-1418,1419-1426
3puv B:21-28,29-36,41-51,202-209,210-217
3puv A:21-28,29-36,41-51,202-209,210-217
3auy B:17-23,26-32,37-51,987-996,997-1004
3auy A:17-23,26-32,37-51,987-996,997-1004
2it1 B:21-28,29-36,41-51,202-209,210-217
2it1 A:21-29,30-36,41-51,202-209,210-217
3g60 B:405-415,417-427,427-438,592-599,600-607
3g60 A:1048-1058,1059-1067,1068-1081,1237-1244,1245-1251
3g60 A:405-415,417-425,426-438,592-599,600-607
3g60 B:1048-1058,1059-1067,1068-1081,1237-1244,1245-1251
2d3w C:13-25,27-34,39-49,214-221,222-230
2d3w A:13-25,26-34,38-49,214-221,222-230
2d3w D:13-25,26-34,39-49,214-221,222-230
2d3w B:13-25,27-34,39-49,214-221,222-230
2o8f B:1110-1116,1128-1133,1139-1157,1261-1268,1288-1292
3zqj C:638-646,647-654,659-678,912-920,924-933
3zqj C:14-24,25-32,37-60,569-578,581-590
3zqj B:14-24,25-32,37-60,569-575,581-590
3zqj E:638-646,647-654,659-678,912-921,924-933
3zqj A:638-646,647-654,659-678,912-920,924-933
3zqj D:14-24,25-32,37-60,569-577,581-590
3zqj E:14-24,25-32,37-60,569-577,581-590
3zqj D:638-646,647-654,659-678,912-920,924-933
3zqj A:14-24,25-32,37-60,569-577,581-590
3zqj F:638-645,649-654,659-678,912-917,924-933
3zqj F:15-24,25-33,36-59,569-575,581-590
3zqj B:638-646,647-654,659-678,912-920,924-933
2pcj B:22-29,30-37,42-52,207-214,215-223
2pcj A:22-29,30-37,42-52,207-214,215-223
3puz B:23-28,29-36,41-51,202-209,210-217
3puz A:23-28,29-36,41-51,202-209,210-217
3aux A:17-23,26-32,37-51,987-996,997-1004
2pjz A:16-29,31-37,42-52,195-201,202-209
3fh6 D:20-28,29-36,41-51,202-209,210-217
3fh6 C:22-28,29-36,41-51,202-209,210-217
3fh6 B:20-28,29-36,41-51,202-209,210-217
3fh6 A:22-28,29-36,41-51,202-209,210-217
3c41 K:19-25,27-34,39-49,204-211,212-219
3c41 J:13-25,27-34,39-49,204-211,212-219
3rlf B:21-28,29-36,41-51,202-209,210-217
3rlf A:21-28,29-36,41-51,202-209,210-217
2vf7 A:516-523,523-530,535-553,800-805,812-821
2vf7 A:25-35,36-43,48-71,448-456,460-469
2vf7 B:516-523,523-530,535-553,800-805,812-821
2vf7 C:513-523,523-530,535-552,800-805,812-821
2vf7 B:28-35,37-43,48-71,448-457,460-469
2vf7 C:28-35,36-43,48-71,448-453,460-469
3pih A:602-610,610-617,622-641,875-881,890-896
3pih A:13-23,24-31,36-58,533-539,548-554
2yyz A:21-28,29-36,41-51,202-209,210-217
3nhb A:604-615,616-623,628-638,792-799,800-807
3qkt B:15-21,24-30,35-49,864-873,874-882
3qkt D:15-21,24-30,35-49,864-873,874-882
3qkt C:15-21,24-30,35-49,864-873,874-882
3qkt A:15-21,24-30,35-49,864-873,874-882
3tui H:24-29,31-38,43-53,209-216,217-224
3tui D:23-29,32-38,43-53,209-216,217-224
3tui C:23-29,32-38,43-53,209-216,217-224
3tui G:24-29,31-38,43-53,209-216,217-224
1xef A:480-493,495-502,507-517,671-678,679-686
1xef D:483-493,495-502,507-517,671-678,679-686
1xef C:488-493,495-502,507-517,671-678,679-686
1xef B:481-493,495-502,507-517,671-678,679-686
3b5w G:363-368,370-375,380-391,546-553,554-561
3b5w H:363-368,370-375,380-391,546-553,554-561
3b5w F:363-368,370-375,380-391,546-553,554-561
3b5w C:357-368,370-377,379-391,546-553,554-561
3b5w D:357-368,370-377,379-391,546-553,554-560
3b5w E:363-368,370-375,380-391,546-553,554-561
3b5w B:357-368,370-377,379-391,546-553,554-560
3b5w A:357-368,370-377,379-391,546-553,554-560
2pze A:439-450,451-458,463-473,614-621,622-629
2d2e A:15-28,29-36,41-51,212-219,220-227
3qku B:15-21,24-30,35-49,864-873,874-882
3qku A:15-21,24-30,35-49,864-873,874-882
2ixe A:496-507,509-515,520-530,687-694,695-702
2ixe D:501-507,509-515,520-530,687-694,695-702
3nh9 A:609-615,616-623,628-638,792-799,800-807
2ixg A:496-507,509-515,520-530,687-694,695-702
2olj A:19-25,27-34,39-49,204-211,212-219
2olj B:20-25,27-34,39-49,204-211,212-219
2iw3 A:447-454,456-462,467-478,607-614,615-623
2iw3 B:447-454,455-462,467-478,607-614,615-623
2o8b B:1110-1116,1128-1134,1139-1157,1261-1268,1288-1292
2ixf A:496-507,509-515,520-530,687-694,695-702
2ixf C:496-507,508-515,520-530,687-694,695-702
2ixf B:496-507,509-515,520-530,687-694,695-702
2ixf D:496-507,508-515,520-530,687-694,695-702
2yl4 A:513-519,521-527,532-542,699-706,707-714
3tuj C:23-29,32-39,42-53,209-216,217-224
3tuj D:15-28,32-38,42-53,209-216,217-224
2ffb A:487-494,495-502,507-517,671-678,679-686
2yz2 B:25-32,33-40,45-55,206-213,214-221
2yz2 A:25-32,33-40,45-55,206-213,214-221
2bbo A:442-450,451-459,463-473,614-621,622-629
2bbo A:439-443,451-459,463-473,614-621,622-629
2ihy A:20-27,27-35,40-50,212-219,220-227
3euk C:50-56,59-65,70-84,1471-1482,1483-1494
3euk H:50-56,59-65,70-84,1470-1482,1483-1495
2o8e B:1110-1116,1128-1134,1137-1157,1261-1268,1288-1292
2cbz A:659-669,671-678,683-693,836-843,844-851
2ix3 A:447-454,456-462,467-478,607-614,615-623
2zu0 C:13-25,27-34,39-49,214-221,222-230
2iwh B:447-454,455-462,467-478,607-614,615-623
2iwh A:447-454,455-462,467-478,607-614,615-623
2nq2 C:17-23,31-38,43-53,197-204,205-211
2nq2 D:22-30,31-38,42-53,197-204,205-211
2pcl A:22-29,30-37,42-52,207-214,215-223
3puw A:21-28,29-36,41-51,202-209,210-217
3puw B:21-28,29-36,41-51,202-209,210-217
2o8d B:1110-1116,1128-1134,1139-1157,1261-1268,1288-1292
3b5j A:483-494,495-502,507-517,671-678,679-686
3nha A:604-615,616-623,628-638,792-799,800-807
3c4j B:19-25,27-34,39-49,204-211,212-219
3c4j A:19-25,27-34,39-49,204-211,212-219
2fgk C:488-493,495-502,507-517,671-678,679-686
2fgk B:483-493,495-502,507-517,671-678,679-686
2fgk A:488-493,495-502,507-517,671-678,679-686
2fgk D:487-493,495-502,507-517,671-678,679-686
3pv0 B:21-28,29-36,41-51,202-209,210-217
3pv0 A:23-28,29-36,41-51,202-209,210-217
2fgj D:486-493,495-502,507-517,671-678,679-686
2fgj C:484-493,495-502,507-517,671-678,679-686
2fgj B:483-493,495-502,507-517,671-678,679-686
2fgj A:483-493,495-502,507-517,671-678,679-686
3fvq A:23-29,30-37,42-52,207-214,215-222
3fvq B:23-29,30-37,42-52,207-214,215-222
2vf8 A:515-523,523-530,535-553,800-806,812-821
2vf8 B:514-523,523-530,535-553,800-805,812-821
2ghi A:38-46,47-53,58-68,221-228,229-236
2ghi D:34-46,47-53,58-68,221-228,229-236
2ghi C:38-46,47-53,58-68,221-228,229-236
2ghi B:38-46,47-53,58-68,221-228,229-236
2qi9 C:15-25,25-33,38-48,201-208,209-216
2qi9 D:15-25,25-33,38-48,201-208,209-216