1. c.119.1 DAK1/DegV-like domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different !
DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest]
1un8 d1un8a4 A:51-56,61-69,75-79,151-169,171-186
1un8 d1un8b4 B:51-56,61-69,75-79,151-169,171-186
2. c.54.1 PTS system fructose IIA component-like active dimer is formed by strand 5 swapping !
PTS system fructose IIA component-like 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 21345; strand 5 is antiparallel to the rest
3b48 d3b48a1 A:2-10,11-26,31-38,98-111,115-126
3b48 d3b48b1 B:2-10,11-26,31-38,98-113,115-126
3ct6 d3ct6a1 A:2-10,11-27,30-36,91-106,108-120
3b48 d3b48d1 D:2-10,11-26,31-38,98-114,115-126
3b48 d3b48f1 F:2-10,11-26,30-38,98-114,115-126
3. c.56.5 Zn-dependent exopeptidases core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest !
Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
1ylo d1ylof2 F:54-64,164-184,187-197,315-334,334-343
1ylo d1yloc2 C:54-64,164-184,187-197,315-334,334-343
1ylo d1ylob2 B:54-64,164-184,187-197,315-334,334-343
1ylo d1ylod2 D:54-64,164-184,187-197,315-334,334-343
1ylo d1yloe2 E:54-64,164-184,187-197,315-334,334-343
1ylo d1yloa2 A:54-64,164-184,187-197,315-334,334-343
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 811 (enumeration index: query604) of S5
3tax A:831-837,844-859,860-867,962-977,976-991
3tax C:831-837,844-859,860-867,962-977,976-991
3oy7 B:184-189,198-214,217-224,342-356,355-373
3oy7 A:184-189,198-214,217-224,342-356,355-373
3pnq A:45-54,56-64,70-76,149-167,169-184
3pe3 C:831-837,844-859,860-867,962-977,976-995
3pe3 D:831-837,844-859,860-867,962-977,976-995
3pe3 A:831-837,844-859,860-867,962-977,976-995
3pe3 B:831-837,844-859,860-867,962-977,976-995
2vsn B:377-383,390-405,406-413,508-523,522-541
2vsn A:377-383,390-405,406-413,508-523,522-541
3i0n A:229-235,237-248,249-255,293-301,305-314
3i0n B:229-235,237-248,249-255,293-301,305-314
2jlb A:377-383,390-405,406-413,508-523,522-540
2jlb B:377-383,390-405,406-413,508-523,522-540
2xgs A:377-383,390-405,406-413,508-523,522-540
2xgs B:377-383,390-405,406-413,508-523,522-541
3huf C:229-235,237-248,249-255,293-305,306-323
3huf B:116-121,129-137,138-142,177-190,195-213
3huf A:116-121,129-137,138-142,177-190,195-210
3lp8 A:1-7,9-22,26-32,289-300,303-314
3m8k A:24-30,31-44,53-60,235-254,266-278
3pno D:45-54,56-64,70-76,149-167,169-184
3pno B:46-54,56-64,70-76,149-167,169-184
3pno A:45-54,56-64,70-76,149-167,169-184
3gx1 B:543-551,553-567,571-577,633-647,649-665
3lop A:35-43,45-70,76-84,313-334,338-349
3oy2 A:184-189,198-214,217-224,342-356,355-373
3oy2 B:184-189,198-214,217-224,342-356,355-373
3egl A:3-9,14-22,23-27,99-118,119-135
3egl C:3-9,14-22,23-27,99-118,119-135
3egl B:3-9,14-22,23-27,99-118,119-134
2vsy B:377-383,390-405,406-413,508-523,522-541
2vsy A:377-383,390-405,406-413,508-523,522-541
3pe4 A:831-837,844-859,860-867,962-977,976-995
3pe4 C:831-837,844-859,860-867,962-977,976-995
2xgm B:377-383,390-405,406-413,508-523,522-540
2xgm A:377-383,390-405,406-413,508-523,522-541
2xgo B:377-383,390-405,406-413,508-523,522-540
2xgo A:377-383,390-405,406-413,508-523,522-540
3eaf A:43-53,56-80,86-98,328-349,356-368
3gdw B:545-553,555-569,573-579,637-651,653-678
3gdw A:545-553,555-569,573-579,637-651,653-675
2qk4 B:3-9,11-25,28-34,294-306,308-319
3hut A:40-48,53-75,81-89,312-333,337-348
3lkb B:5-15,20-42,46-56,284-309,312-324
3kl9 I:58-68,179-199,202-212,325-344,344-353
3kl9 G:59-68,179-199,203-212,325-344,344-353
3kl9 L:58-68,179-199,202-212,325-344,344-353
3kl9 C:59-68,179-199,203-212,325-344,344-353
3kl9 H:59-68,179-199,203-212,325-344,344-353
3kl9 F:59-67,179-199,203-211,325-344,344-353
3kl9 D:58-68,179-199,202-212,325-344,344-353
3kl9 J:59-68,179-199,203-212,325-344,344-353
3kl9 K:59-67,179-199,203-211,325-344,344-353