1. d.342.1 PH1570-like
PH1570-like duplication: two beta(4)-alpha structural repeats, related by pseudo twofold symmetry; two extra helices in the linker region; single 8-standed antiparallel beta-sheet, order: 12348765
2hq4 d2hq4a1 A:19-28,30-43,124-129,131-137,138-152
2hq4 d2hq4b1 B:19-28,30-43,124-129,131-137,138-149
2. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
1ct9 d1ct9c2 C:1-8,12-28,145-151,153-159,160-168
1gph d1gph32 3:1-8,11-24,180-186,187-193,194-202
1ct9 d1ct9d2 D:1-8,12-28,145-151,153-159,160-168
1ct9 d1ct9a2 A:1-8,12-28,145-151,153-159,160-168
1ct9 d1ct9b2 B:1-8,12-28,145-151,153-159,160-168
1gph d1gph42 4:1-8,11-24,180-186,187-193,194-202
1gph d1gph22 2:1-8,11-24,180-186,187-193,194-202
1gph d1gph12 1:1-8,11-24,180-186,187-193,194-202
1ao0 d1ao0b2 B:1-8,11-24,180-186,187-193,194-202
1ao0 d1ao0a2 A:1-8,11-24,180-186,187-193,194-202
1ao0 d1ao0d2 D:1-8,11-24,180-186,187-193,194-202
1ao0 d1ao0c2 C:1-8,11-24,180-186,187-193,194-202
2j6h d2j6hb2 B:1-8,11-24,178-184,185-191,192-200
2j6h d2j6ha2 A:1-8,11-24,178-184,185-191,192-200
1xff d1xffb_ B:1-8,11-24,178-184,185-191,192-200
2bpl d2bpla2 A:1-8,11-24,178-184,185-191,192-200
2bpl d2bplb2 B:1-8,11-24,178-184,185-191,192-200
1jxa d1jxab2 B:1-8,12-24,178-184,185-191,192-201
2bpl d2bplc2 C:1-8,11-24,178-184,185-191,192-200
1ecj d1ecjd2 D:1-8,11-24,190-197,201-208,209-217
1xfg d1xfgb_ B:1-8,11-27,178-184,185-191,192-200
1xff d1xffa_ A:1-8,11-27,178-184,185-191,192-200
1ecc d1ecca2 A:1-8,11-24,190-198,200-208,209-217
1xfg d1xfga_ A:1-8,11-27,178-184,185-191,192-200
1ecj d1ecjb2 B:1-8,11-24,190-198,200-208,209-217
1ecb d1ecbc2 C:1-8,11-24,190-198,200-208,209-217
1ecf d1ecfb2 B:1-8,11-24,190-198,200-208,209-217
1ecb d1ecbd2 D:1-8,11-24,190-198,200-208,209-217
1ecg d1ecgb2 B:1-8,11-24,190-198,200-208,209-217
1ecj d1ecjc2 C:1-8,11-24,190-198,200-208,209-217
1ecj d1ecja2 A:1-8,11-24,190-198,200-208,209-217
1ecb d1ecba2 A:1-8,11-24,190-198,200-208,209-217
1ecf d1ecfa2 A:1-8,11-24,190-198,200-208,209-217
1ecb d1ecbb2 B:1-8,11-24,190-198,200-208,209-217
1ecg d1ecga2 A:1-8,11-24,190-198,200-208,209-217
1jxa d1jxaa2 A:1-8,11-24,178-184,185-191,192-201
1ecc d1eccb2 B:1-8,11-24,189-198,200-209,209-217
1q15 d1q15a2 A:4-10,12-24,127-132,134-139,140-149
1q19 d1q19a2 A:4-10,12-24,127-132,134-139,140-149
1q19 d1q19c2 C:4-10,12-24,127-132,134-139,140-149
1q19 d1q19d2 D:4-10,12-24,127-132,134-139,140-149
1q15 d1q15c2 C:4-10,12-24,127-132,134-139,140-149
1q19 d1q19b2 B:4-10,12-24,127-132,134-139,140-149
1q15 d1q15d2 D:4-10,12-24,127-132,134-139,140-149
1q15 d1q15b2 B:4-10,12-24,127-132,134-139,140-149
3. e.3.1 beta-lactamase/transpeptidase-like
beta-lactamase/transpeptidase-like contains a cluster of helices and an alpha+beta sandwich
1wyb d1wyba1 A:57-63,72-81,81-90,91-101,371-390
2dcf d2dcfa1 A:57-64,72-81,81-90,91-101,371-390
1wyc d1wyca1 A:57-64,72-81,81-90,91-101,371-390
1mki d1mkia_ A:1-5,13-26,48-56,58-65,308-323
4. d.264.1 Prim-pol domain
Prim-pol domain consists of two alpha+beta domains
1rni d1rnia_ A:106-114,123-135,156-165,169-174,220-236
5. c.97.1 Cytidine deaminase-like contains extra C-terminal strand 5, order 21345 !
Cytidine deaminase-like core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
1p4r d1p4ra2 A:268-276,297-311,431-438,439-447,450-470
1pl0 d1pl0d2 D:268-276,297-311,431-438,439-447,450-470
1p4r d1p4rb2 B:268-276,297-311,431-438,439-447,450-470
1pl0 d1pl0b2 B:268-276,297-311,431-438,439-447,450-470
1m9n d1m9nb2 B:269-277,298-312,432-439,440-448,451-471
1pkx d1pkxb2 B:268-276,297-311,431-438,439-447,450-470
1thz d1thza2 A:269-277,298-312,432-439,440-448,451-471
1g8m d1g8mb2 B:269-277,298-312,432-439,440-448,451-471
1pkx d1pkxd2 D:268-276,297-311,431-438,439-447,450-470
1pl0 d1pl0c2 C:268-276,297-311,431-438,439-447,450-470
1pkx d1pkxa2 A:268-276,297-311,431-438,439-447,450-470
1thz d1thzb2 B:269-277,298-312,432-439,440-448,451-471
1g8m d1g8ma2 A:269-277,298-312,432-439,440-448,451-471
1m9n d1m9na2 A:269-277,298-312,432-439,440-448,451-471
1pl0 d1pl0a2 A:268-276,297-311,431-438,439-447,450-470
1pkx d1pkxc2 C:268-276,297-311,431-438,439-447,450-470
1oz0 d1oz0a2 A:269-277,298-312,432-439,440-448,451-471
1oz0 d1oz0b2 B:269-277,298-312,432-439,440-448,451-471
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 779 (enumeration index: query629) of S5
3tyt A:379-385,392-404,437-442,443-451,548-560
2iu3 B:269-277,298-312,432-439,440-448,451-471
2iu3 A:269-277,298-312,432-439,440-448,451-471
2x2i B:86-94,108-123,283-291,321-329,333-346
2x2i C:86-94,108-123,283-291,321-329,333-346
2x2i A:86-94,108-123,283-291,321-329,333-346
2x2i D:86-94,108-123,283-291,321-330,333-346
3ooj D:1-8,11-27,178-184,185-191,192-200
3ooj A:1-8,11-27,178-184,185-191,192-200
3ooj C:1-8,11-27,178-184,185-191,192-200
3ooj G:1-8,11-27,178-184,185-191,192-200
3ooj E:1-8,11-27,178-184,185-191,192-200
3ooj F:1-8,11-27,178-184,185-191,192-200
3ooj H:1-8,11-27,178-184,185-191,192-200
3ooj B:1-8,11-27,178-184,185-191,192-200
3a66 A:57-64,70-81,81-90,91-101,371-390
2zly A:57-64,72-81,81-90,91-101,371-390
2zm9 A:57-64,70-81,81-90,91-101,371-390
2zm7 A:57-63,72-81,81-90,91-101,371-390
2zma A:57-64,70-81,81-90,91-101,371-390
2b1g D:269-277,298-312,432-439,440-448,451-471
2b1g B:269-277,298-312,432-439,440-448,451-471
2b1g C:269-277,298-312,432-439,440-448,451-471
2b1g A:269-277,298-312,432-439,440-448,451-471
3m1m A:106-114,123-135,156-165,169-174,220-236
2e8i A:57-64,72-81,81-90,91-101,371-390
2x2h C:86-94,108-123,283-291,321-330,333-346
2x2h B:86-94,108-123,283-291,321-330,333-346
2x2h A:86-94,108-123,283-291,321-330,333-346
2x2h D:86-94,108-123,283-291,321-330,333-346
2x2j D:86-94,108-123,283-291,321-330,333-346
2x2j B:86-94,108-123,283-291,321-330,333-346
2x2j C:86-94,108-123,283-291,321-330,333-346
2x2j A:86-94,108-123,283-291,321-330,333-346
2iu0 A:269-277,298-312,432-439,440-448,451-471
2iu0 B:269-277,298-312,432-439,440-448,451-471
2b1i A:269-277,298-312,432-439,440-448,451-471
2b1i B:269-277,298-312,432-439,440-448,451-471
2zm0 A:57-64,72-81,81-90,91-101,371-390
2zm2 A:57-64,70-81,81-90,91-101,371-390
2zm8 A:57-63,72-81,81-90,91-101,371-390
3a65 A:57-64,70-81,81-90,91-101,371-390
3s01 A:379-385,392-404,437-442,443-451,548-560