1.   e.8.1         DNA/RNA polymerases  "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain !   
                   DNA/RNA polymerases divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
                   1s0v  d1s0va_  A:331-339,437-445,453-469,507-525,532-538
                   1h38  d1h38c_  C:331-342,437-445,453-469,507-525,532-538
                   1h38  d1h38d_  D:331-342,437-445,453-469,507-525,532-538
                   1s0v  d1s0vc_  C:331-339,437-445,453-469,507-525,533-538
                   1s76  d1s76d_  D:331-344,437-445,453-469,507-525,532-538
                   1aro  d1arop_  P:331-344,437-445,452-469,507-525,532-536
                   1s77  d1s77d_  D:331-344,437-445,453-469,507-525,532-538
                   1qln  d1qlna_  A:331-344,437-445,453-469,507-525,532-538
                   2pi5  d2pi5a1  A:331-344,437-445,453-469,507-525,532-538
                   1cez  d1ceza_  A:331-344,437-445,453-469,507-525,530-538
                   2pi4  d2pi4a1  A:331-344,437-445,453-469,507-525,532-537
                   1h38  d1h38b_  B:331-346,437-445,453-469,507-525,532-538
                   1msw  d1mswd_  D:331-344,437-445,453-469,507-525,530-538
                   1h38  d1h38a_  A:331-346,437-445,453-469,507-525,532-538
                   4rnp  d4rnpc_  C:331-345,437-445,453-470,507-525,532-538
                   4rnp  d4rnpb_  B:331-345,437-445,453-470,507-525,532-538
                   4rnp  d4rnpa_  A:331-345,437-445,453-470,507-525,532-538
                   1s0v  d1s0vb_  B:331-346,437-445,453-469,507-525,533-538

2.   d.41.2        Nicotinate/Quinolinate PRTase N-terminal domain-like    
                   alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
                   1yir  d1yirc2  C:20-35,118-143,225-236,238-255,359-368
                   1yir  d1yird2  D:20-35,118-143,225-236,238-255,359-368
                   1yir  d1yira2  A:20-35,118-143,225-236,238-255,359-368
                   1yir  d1yirb2  B:20-35,118-143,225-236,238-255,359-368
                   1ybe  d1ybea2  A:35-50,140-167,248-260,267-281,391-401
                   1ybe  d1ybeb2  B:35-50,140-168,248-260,267-281,392-401

3.   c.37.1        P-loop containing nucleoside triphosphate hydrolases  division into families based on beta-sheet topologies !   
                   P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
                   1fpm  d1fpmb_  B:131-154,203-212,214-226,242-256,522-528

List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1205 (enumeration index: query635.1093) of S5

3spa  A:710-724,818-826,834-850,890-907,918-922
3e3j  C:331-344,437-445,452-469,507-525,532-538
3e3j  B:331-344,437-445,452-469,507-525,532-538
3qmz  A:3581-3637,3642-3659,3666-3685,3688-3699,3893-3898
3qmz  B:3581-3637,3642-3659,3666-3685,3688-3699,3893-3898
3qmz  B:1941-1960,1969-1985,1989-2002,2006-2020,2067-2074
3qmz  A:1941-1960,1969-1985,1989-2002,2006-2020,2067-2074
3os4  B:16-31,114-138,220-231,236-250,354-363
3os4  A:16-31,114-139,220-232,233-250,354-363
3e2e  A:331-344,437-445,452-469,507-525,532-538
2q14  D:224-248,300-313,326-342,344-353,399-405