1. e.28.1 Reovirus inner layer core protein p3
Reovirus inner layer core protein p3 large protein without apparent domain division; has a number of all-alpha regions and one all beta domain near the C-end
2btv d2btvb_ B:333-350,352-357,366-382,391-409,572-583
1uf2 d1uf2b_ B:349-367,369-375,384-399,404-424,594-614
1uf2 d1uf2a_ A:349-367,369-375,384-399,404-424,594-609
2btv d2btvb_ B:333-350,352-357,366-382,391-409,519-539
2. i.7.1 Reovirus components
Reovirus components
1ej6 d1ej6b_ B:588-601,603-609,622-640,641-657,805-815
3. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1w4x d1w4xa2 A:195-209,210-217,298-318,319-327,343-351
4. c.2.1 NAD(P)-binding Rossmann-fold domains
NAD(P)-binding Rossmann-fold domains core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456 ! The nucleotide-binding modes of this and the next two folds/superfamilies are similar
1pjl d1pjlc1 C:2277-2299,2306-2312,2313-2331,2333-2341,2487-2502
1pjl d1pjlg1 G:6277-6299,6306-6311,6313-6331,6333-6342,6487-6502
1pjl d1pjlf1 F:5277-5299,5306-5311,5313-5331,5333-5342,5487-5502
1efl d1efld1 D:277-299,306-311,313-331,333-341,487-502
1pjl d1pjld1 D:3277-3299,3306-3311,3313-3331,3333-3342,3487-3502
1do8 d1do8a1 A:277-299,306-311,313-331,333-342,487-502
1efk d1efka1 A:277-299,306-311,313-331,333-342,487-502
1pj4 d1pj4d1 D:3277-3299,3306-3311,3312-3331,3333-3342,3487-3502
1gz4 d1gz4c1 C:277-299,306-311,313-331,333-342,487-502
1gz3 d1gz3b1 B:277-299,306-311,313-331,333-342,487-502
1gz4 d1gz4a1 A:277-299,306-311,312-331,333-342,487-502
1pj4 d1pj4c1 C:2277-2299,2306-2311,2312-2331,2333-2342,2487-2502
1gz4 d1gz4b1 B:277-299,306-311,312-331,333-342,487-502
1gz4 d1gz4d1 D:277-299,306-311,312-331,333-342,487-502
1efk d1efkb1 B:277-299,306-311,313-331,333-342,487-502
1efk d1efkc1 C:277-299,306-311,313-331,333-342,487-502
1pjl d1pjlb1 B:1277-1299,1306-1311,1313-1331,1333-1341,1487-1502
1efk d1efkd1 D:277-299,306-311,313-331,333-341,487-502
1pj2 d1pj2c1 C:2277-2299,2306-2311,2313-2331,2333-2342,2487-2502
1pj3 d1pj3c1 C:2277-2299,2306-2311,2313-2331,2333-2342,2487-2502
1efl d1eflc1 C:277-299,306-311,313-331,333-342,487-502
1efl d1efla1 A:277-299,306-311,313-331,333-342,487-502
1pj4 d1pj4a1 A:277-299,306-311,312-331,333-342,487-503
1pj4 d1pj4b1 B:1277-1299,1306-1311,1312-1331,1333-1342,1487-1503
1gz3 d1gz3c1 C:277-299,306-311,312-331,333-342,487-503
1gz3 d1gz3d1 D:277-299,306-311,312-331,333-342,487-503
1pjl d1pjla1 A:277-299,306-311,313-331,333-341,487-503
1pjl d1pjle1 E:4277-4299,4306-4311,4313-4331,4333-4342,4487-4503
1qr6 d1qr6a1 A:277-299,306-311,313-331,333-342,487-503
1pj3 d1pj3b1 B:1277-1299,1306-1311,1313-1331,1333-1342,1487-1503
1qr6 d1qr6b1 B:1277-1299,1306-1311,1313-1331,1333-1342,1487-1503
1pj3 d1pj3d1 D:3277-3299,3306-3311,3313-3331,3333-3342,3487-3503
1pj3 d1pj3a1 A:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2d1 D:277-299,306-311,313-331,333-342,487-503
1pj2 d1pj2d1 D:3277-3299,3306-3311,3313-3331,3333-3342,3487-3503
1efl d1eflb1 B:277-299,306-311,313-331,333-342,487-503
1gz3 d1gz3a1 A:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2a1 A:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2b1 B:277-299,306-311,313-331,333-342,487-503
1pj2 d1pj2a1 A:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2i1 I:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2o1 O:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2c1 C:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2m1 M:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2h1 H:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2j1 J:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2l1 L:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2k1 K:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2p1 P:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2g1 G:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2n1 N:277-299,306-311,313-331,333-342,487-503
1gq2 d1gq2f1 F:277-299,306-311,313-331,333-342,487-503
1pj2 d1pj2b1 B:1277-1299,1306-1311,1313-1331,1333-1342,1487-1503
1gq2 d1gq2e1 E:277-299,306-311,313-331,333-342,487-503
1pjl d1pjlh1 H:7277-7299,7306-7311,7313-7331,7333-7341,7487-7503
5. e.23.1 Acetyl-CoA synthetase-like
Acetyl-CoA synthetase-like 4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
1md9 d1md9a_ A:279-294,301-306,311-323,345-352,441-453
1mdf d1mdfa_ A:279-294,301-306,311-323,345-352,441-453
1mdb d1mdba_ A:279-294,301-306,311-323,345-352,441-453
6. a.102.1 Six-hairpin glycosidases
alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
2jg0 d2jg0a1 A:334-356,379-383,402-412,415-431,453-468
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1078 (enumeration index: query643.1288) of S5
3gwd A:187-201,202-209,292-312,313-321,335-343
3kz4 A:370-389,391-396,400-415,420-441,539-562
3kz4 B:370-389,391-396,400-415,420-441,539-561
3k1q C:524-538,540-545,559-577,578-594,741-750
3k1q B:524-538,540-545,559-577,578-594,741-750
3gzu A:370-389,391-396,400-415,420-441,539-562
3gzu B:370-389,391-395,400-415,420-441,539-561
2yls A:195-209,210-217,298-318,319-328,343-351
2ylx A:195-209,210-217,298-318,319-328,343-351
2ylt A:195-209,210-217,298-318,319-327,343-350
2wyn C:334-356,379-383,402-412,415-431,453-468
2wyn A:334-356,379-383,402-412,415-431,453-468
2wyn D:334-356,379-383,402-412,415-431,453-468
3n09 A:370-389,391-396,400-415,420-441,539-562
3n09 B:370-389,391-395,400-415,420-441,539-561
2ylr A:195-209,210-217,298-318,319-327,343-350
2aw5 C:267-289,296-301,303-321,323-332,474-490
2aw5 A:267-289,296-301,303-321,323-332,474-490
3gwf A:187-201,202-209,292-312,313-321,335-343
2ylw A:195-209,210-217,298-318,319-327,343-351
2ym2 A:195-209,210-217,298-318,319-328,343-351
3pvm A:1007-1029,1064-1068,1075-1094,1096-1112,1286-1305
3pvm C:1007-1029,1064-1068,1075-1094,1096-1112,1286-1305
2ym1 A:195-209,210-217,298-318,319-327,343-351
3prx A:1007-1029,1064-1068,1075-1094,1096-1112,1286-1305
3prx C:1007-1029,1064-1068,1075-1090,1096-1112,1286-1305
2ylz A:195-209,210-217,298-318,319-327,343-351
1do8 D:3277-3299,3306-3311,3313-3331,3333-3342,3487-3502
1do8 B:1277-1299,1306-1311,1313-1331,1333-1342,1487-1502
1do8 C:2277-2299,2306-2311,2313-2331,2333-2342,2487-2503