1. f.49.1 Proton glutamate symport protein
Proton glutamate symport protein multihelical membrane protein; partial structural duplication in the C-terminal region; oligomeric state: trimer
2nwx d2nwxb1 B:57-73,73-108,277-293,295-307,389-416
2nwx d2nwxa1 A:57-73,73-108,277-293,295-307,389-416
2nwx d2nwxc1 C:57-73,73-108,277-293,295-307,389-416
1xfh d1xfhb_ B:42-70,73-108,277-293,301-311,389-416
2nww d2nwwc1 C:43-70,73-108,277-293,295-311,389-416
1xfh d1xfha_ A:42-70,73-108,277-293,295-311,389-416
2nww d2nwwa1 A:42-70,73-108,277-293,295-311,389-416
2nww d2nwwb1 B:42-70,73-108,277-293,295-311,389-416
1xfh d1xfhc_ C:42-70,73-108,277-293,295-311,389-416
2. e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit !
beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization
2e2h d2e2ha1 A:922-948,959-972,982-998,1027-1036,1038-1057
1twf d1twfa_ A:922-948,959-972,982-998,1015-1027,1038-1057
1i6h d1i6ha_ A:922-948,959-972,982-998,1015-1027,1038-1057
2e2i d2e2ia1 A:922-948,959-972,982-998,1015-1027,1038-1057
2e2j d2e2ja1 A:922-948,959-972,982-997,1015-1027,1038-1057
2nvz d2nvza1 A:922-948,959-972,982-998,1015-1027,1038-1057
2nvx d2nvxa1 A:922-948,959-972,982-998,1015-1027,1038-1057
1twh d1twha_ A:922-948,959-972,982-998,1015-1027,1038-1057
2ja6 d2ja6a1 A:922-948,959-972,982-998,1015-1027,1038-1058
2ja5 d2ja5a1 A:922-948,959-972,982-998,1015-1027,1038-1058
2e2h d2e2ha1 A:922-948,959-972,982-998,1015-1027,1038-1057
2b63 d2b63a1 A:922-948,959-972,982-998,1015-1027,1038-1057
2ja8 d2ja8a1 A:922-948,959-972,982-998,1015-1027,1038-1058
2b8k d2b8ka1 A:922-948,959-972,982-998,1015-1027,1038-1058
3. f.1.4 Bcl-2 inhibitors of programmed cell death PROVISIONAL CLASSIFICATION, based on structural similarity to the diphtheria toxin domain !
Toxins' membrane translocation domains multi-helical domains of various folds which is thought to unfold in the membrane
2k7w d2k7wa1 A:14-39,87-103,106-128,129-148,169-190
1f16 d1f16a_ A:15-36,87-103,106-128,129-149,169-190
1o0l d1o0la_ A:9-28,74-91,92-114,115-134,156-175
4. i.8.1 RNA polymerase
RNA polymerase
1r9t d1r9ta_ A:922-948,959-972,982-998,1015-1027,1038-1057
1sfo d1sfoa_ A:922-948,959-972,982-998,1015-1027,1038-1057
1r9s d1r9sa_ A:922-948,959-972,982-998,1015-1027,1038-1057
1nt9 d1nt9a_ A:922-948,959-972,982-998,1015-1027,1038-1057
1r5u d1r5ua_ A:922-948,959-972,982-998,1015-1027,1038-1057
1nik d1nika_ A:922-948,959-972,982-998,1015-1027,1038-1057
1pqv d1pqva_ A:922-948,959-972,982-998,1015-1027,1038-1057
1y1y d1y1ya_ A:922-948,959-972,982-998,1015-1027,1038-1058
1y1v d1y1va_ A:922-948,959-972,982-998,1015-1027,1038-1058
2r92 d2r92a1 A:922-948,959-972,982-998,1015-1027,1038-1058
2vum d2vuma1 A:922-948,959-972,982-998,1015-1027,1038-1058
1y1w d1y1wa_ A:922-948,959-972,982-998,1015-1027,1038-1058
1wcm d1wcma_ A:922-948,959-972,982-998,1015-1027,1038-1058
1y77 d1y77a_ A:922-948,959-972,982-998,1015-1027,1038-1058
5. f.54.1 SNF-like
SNF-like 12 transmembrane helices; duplication: consists of two structurally similar halves
2qb4 d2qb4a1 A:28-39,136-153,274-307,307-319,318-335
2q72 d2q72a1 A:28-39,136-153,274-307,307-319,318-335
2q6h d2q6ha1 A:28-39,136-153,274-307,307-318,320-335
2qju d2qjua1 A:24-39,136-153,274-307,307-319,318-335
6. a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases core: 4 helices; bundle; one loop crosses over one side of the bundle
1jzs d1jzsa1 A:642-661,674-698,699-718,738-759,795-817
1jzq d1jzqa1 A:642-661,674-698,699-718,733-759,795-817
1ile d1ilea1 A:641-661,674-698,699-719,733-759,795-817
1ivs d1ivsb2 B:568-596,604-628,629-654,661-684,712-737
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1233 (enumeration index: query657.665.973.1032) of S5
3f3e A:24-39,136-153,274-307,307-319,318-335
3j0k A:922-948,959-972,982-998,1015-1027,1038-1058
3po3 A:922-948,959-972,982-998,1015-1027,1038-1057
3gwv A:24-39,136-153,274-307,307-318,318-335
3o7q A:116-147,257-281,363-374,376-398,410-433
3s14 A:922-948,959-972,982-998,1015-1027,1038-1057
2l7b A:54-82,87-126,129-165,166-182,235-269
3f3d A:24-39,136-153,274-307,307-319,318-335
3gjd A:24-39,136-153,274-307,307-318,318-335
3po2 A:922-948,959-972,982-998,1015-1027,1038-1057
3o7p A:116-147,257-281,363-374,376-398,410-433
3s1n A:922-948,959-972,982-997,1015-1027,1038-1057
3gtp A:922-948,959-972,982-998,1015-1027,1038-1057
2nwl A:42-73,73-108,277-293,295-311,389-416
2nwl C:42-73,73-108,277-293,295-311,389-416
2nwl B:42-73,73-108,277-293,295-311,389-416
1wz2 B:690-714,723-747,748-772,776-799,829-854
1wz2 A:690-714,723-747,748-772,776-799,829-854
3gtl A:922-948,959-972,982-998,1015-1027,1038-1057
3qt1 A:922-948,959-972,982-998,1027-1036,1038-1057
3gtm A:922-948,959-972,982-998,1015-1027,1038-1058
3how A:922-948,959-972,982-998,1015-1027,1038-1057
3mpn A:24-39,136-153,274-307,307-319,318-335
3h0g A:926-952,962-975,985-1001,1030-1039,1041-1060
3h0g M:926-952,962-975,985-1001,1030-1039,1041-1060
3gww A:24-39,137-153,274-307,307-319,318-335
3k7a A:922-948,959-972,982-998,1015-1027,1038-1057
3k7a A:922-948,959-972,982-998,1027-1036,1038-1057
3m4o A:922-948,959-972,982-998,1015-1027,1038-1057
3gwu A:24-39,136-153,274-307,307-318,318-335
3kbc A:79-108,150-171,311-330,334-352,355-371
3kbc C:79-108,150-171,311-330,334-352,355-371
3kbc B:79-108,150-171,311-330,334-352,355-371
3qs5 A:24-39,136-153,274-307,307-319,318-335
1yrl B:209-244,278-297,324-337,358-380,414-433
1yrl A:209-244,278-297,324-337,358-380,414-433
1yrl D:209-244,278-297,324-337,358-380,414-433
1yrl C:209-244,278-297,324-337,358-380,414-433
3i4m A:922-948,959-972,982-998,1015-1027,1038-1058
3i4m A:922-948,959-972,982-998,1027-1036,1038-1058
3s16 A:922-948,959-972,982-997,1015-1027,1038-1057
3mpq A:24-39,136-153,274-307,307-319,318-335