1. c.56.5 Zn-dependent exopeptidases core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops 1ylo d1yloa2 A:19-34,54-64,164-184,187-197,315-334 1ylo d1yloc2 C:19-34,54-64,164-184,187-197,315-334 1ylo d1ylob2 B:19-34,54-64,164-184,187-197,315-334 1ylo d1ylod2 D:19-34,54-64,164-184,187-197,315-334 1ylo d1yloe2 E:19-34,54-64,164-184,187-197,315-334 1ylo d1ylof2 F:19-34,54-64,164-184,187-197,315-334 2gre d2grei2 I:25-40,63-70,187-205,209-218,327-345 2q43 d2q43a1 A:47-62,84-93,117-136,141-150,383-407 1y7e d1y7ea2 A:34-50,89-96,253-269,275-284,441-458 1xmb d1xmba1 A:68-83,105-114,138-157,162-171,404-428 1vgy d1vgyb1 B:25-38,61-70,101-121,125-134,357-376 1vgy d1vgya1 A:25-38,61-70,101-121,125-134,357-376 2afo d2afob1 B:81-99,132-142,159-175,190-200,340-360 2afs d2afsa1 A:81-99,132-142,159-175,190-200,340-360 2afu d2afub1 B:81-99,132-142,159-175,190-200,340-360 2afm d2afma1 A:81-99,132-142,159-175,190-200,340-360 2afx d2afxa1 A:81-99,132-142,159-175,190-200,340-360 2afs d2afsb1 B:81-99,132-142,159-175,190-200,340-360 2afm d2afmb1 B:81-99,132-142,159-175,190-200,340-360 2afw d2afwa1 A:81-99,132-142,159-175,190-200,340-360 2zeh d2zeha1 A:81-99,132-142,159-175,190-200,340-360 1ysj d1ysja1 A:27-42,65-75,99-118,122-132,357-379 2afz d2afza1 A:81-99,132-142,159-175,190-200,340-360 2zeh d2zehb1 B:81-99,132-142,159-175,190-200,340-360 2afw d2afwb1 B:81-99,132-142,159-175,190-200,340-360 1tkh d1tkha1 A:31-49,78-86,94-116,121-129,257-277 2afz d2afzb1 B:81-99,132-142,159-175,190-200,340-360 2afo d2afoa1 A:81-99,132-141,159-175,190-199,340-360 2afx d2afxb1 B:81-99,132-142,159-175,190-200,340-360 2afu d2afua1 A:81-99,132-141,159-175,190-199,340-360 1xjo d1xjoa_ A:31-49,78-86,97-116,121-129,257-277 1de4 d1de4f3 F:159-177,401-410,415-441,445-455,582-604 1xbu d1xbua1 A:31-49,78-86,94-116,121-129,257-277 1de4 d1de4c3 C:159-177,401-410,415-441,445-455,582-604 1tf9 d1tf9a1 A:31-49,78-86,97-116,121-129,257-277 1de4 d1de4i3 I:159-177,401-410,415-441,445-455,582-604 1qq9 d1qq9a_ A:31-49,78-86,94-116,121-129,257-277 1cp7 d1cp7a_ A:31-49,78-86,94-116,121-129,257-277 1tkf d1tkfa1 A:31-49,78-86,94-116,121-129,257-277 1tkj d1tkja1 A:31-49,78-86,97-116,121-129,257-277 1tf8 d1tf8a1 A:31-49,78-86,97-116,121-129,257-277 1f2o d1f2oa_ A:31-49,78-86,97-116,121-129,257-277 1ysj d1ysjb1 B:27-42,65-75,99-118,122-132,357-379 2gre d2gred2 D:24-40,63-71,185-205,209-219,327-344 1f2p d1f2pa_ A:31-49,78-86,94-116,121-129,257-277 2c6p d2c6pa3 A:86-104,370-379,384-409,413-423,570-590 2c6c d2c6ca3 A:86-104,370-379,384-409,413-423,570-590 2jbj d2jbja3 A:86-104,370-379,384-409,413-423,570-590 3bi1 d3bi1a3 A:86-104,370-379,384-409,413-423,570-590 2c6g d2c6ga3 A:86-104,370-379,384-409,413-423,570-590 2pvw d2pvwa3 A:86-104,370-379,384-409,413-423,570-590 2pvv d2pvva3 A:86-104,370-379,384-409,413-423,570-590 3bhx d3bhxa3 A:86-104,370-379,384-409,413-423,570-590 3bi0 d3bi0a3 A:86-104,370-379,384-409,413-423,570-590 2oot d2oota3 A:86-104,370-379,384-409,413-423,570-590 2or4 d2or4a3 A:86-104,370-379,384-409,413-423,570-590 2gre d2grel2 L:24-40,63-71,185-205,209-219,327-345 2cij d2cija3 A:86-104,370-379,384-409,413-423,570-590 2jbk d2jbka3 A:86-104,370-379,384-409,413-423,570-590 1cx8 d1cx8c3 C:159-177,401-410,415-441,446-455,582-605 1cx8 d1cx8f3 F:159-177,401-410,415-441,446-455,582-605 1cx8 d1cx8d3 D:159-177,401-410,415-441,446-455,582-605 1cx8 d1cx8g3 G:159-177,401-410,415-441,446-455,582-605 1cx8 d1cx8a3 A:159-177,401-410,415-441,446-455,582-605 2nsu d2nsua3 A:159-177,401-410,415-441,446-455,582-605 1cx8 d1cx8e3 E:159-177,401-410,415-441,446-455,582-605 1vhe d1vhea2 A:23-36,60-70,180-201,203-213,332-351 2gre d2gree2 E:24-39,63-71,186-205,209-219,327-344 2gre d2grem2 M:24-39,63-70,185-205,210-218,327-344 2gre d2gren2 N:24-39,62-71,186-205,209-219,327-344 2nsu d2nsub3 B:159-177,401-410,415-441,445-455,582-605 1cx8 d1cx8b3 B:159-177,401-410,415-441,445-455,582-605 1cx8 d1cx8h3 H:159-177,401-410,415-441,445-455,582-605 2gre d2grek2 K:24-39,62-71,186-205,209-219,327-344 2gre d2grea2 A:24-39,62-71,186-205,209-219,327-344 2gre d2greo2 O:24-40,63-70,185-205,209-218,327-344 2gre d2grec2 C:24-39,62-71,186-205,209-219,327-344 2gre d2grej2 J:24-39,63-70,185-205,209-218,327-344 1txr d1txra_ A:39-61,90-97,117-136,140-149,269-290 2gre d2greg2 G:24-39,63-70,186-205,209-218,327-344 2anp d2anpa1 A:39-61,90-97,117-136,140-149,269-290 1lok d1loka_ A:39-61,90-97,117-136,140-149,269-290 2iq6 d2iq6a1 A:39-61,90-97,117-136,140-149,269-290 2abz d2abzb1 B:14-30,60-67,72-90,103-110,282-305 1zlh d1zlha1 A:14-30,60-67,72-90,103-110,282-305 1xry d1xrya1 A:39-61,90-99,117-136,140-150,269-290 2prq d2prqa1 A:39-61,90-97,117-136,140-149,269-290 1elm d1elmp_ P:14-30,60-67,72-90,103-110,282-305 1ee3 d1ee3p_ P:14-30,60-67,72-90,103-110,282-305 2pj5 d2pj5c1 C:14-30,60-67,72-90,103-110,282-308 1zli d1zlia1 A:14-30,60-67,72-90,103-110,282-308 1ell d1ellp_ P:14-30,60-67,72-90,103-110,282-305 2pjb d2pjbc1 C:14-30,60-67,72-90,103-110,282-308 1fno d1fnoa4 A:28-46,72-80,138-158,163-172,387-408 2pj3 d2pj3c1 C:14-30,60-67,72-90,103-110,282-308 2piy d2piyc1 C:14-30,60-67,72-90,103-110,282-308 2pj2 d2pj2c1 C:14-30,60-67,72-90,103-110,282-308 2pj1 d2pj1c1 C:14-30,60-67,72-90,103-110,282-308 1z5r d1z5rc1 C:14-30,60-67,72-90,103-110,282-308 2pjc d2pjcc1 C:14-30,60-67,72-90,103-110,282-308 2abz d2abza1 A:14-30,60-67,72-90,103-110,282-305 2pja d2pjac1 C:14-30,60-67,72-90,103-110,282-308 1zg9 d1zg9c1 C:14-30,60-67,72-90,103-110,282-307 2pj7 d2pj7c1 C:14-30,60-67,72-90,103-110,282-308 2piz d2pizc1 C:14-30,60-67,72-90,103-110,282-308 2pj0 d2pj0c1 C:14-30,60-67,72-90,103-110,282-308 1qmu d1qmua2 A:15-31,65-72,77-95,108-115,291-304 1h8l d1h8la2 A:15-31,65-72,77-95,108-115,291-304 2pj8 d2pj8c1 C:14-30,60-67,72-90,103-110,282-308 2jew d2jewa1 A:14-30,60-67,72-90,103-110,282-308 1z8l d1z8la3 A:86-104,370-378,384-409,413-422,570-590 1z8l d1z8lb3 B:86-104,370-378,384-409,413-422,570-590 1z8l d1z8lc3 C:86-104,370-378,384-409,413-422,570-590 1z8l d1z8ld3 D:86-104,370-378,384-409,413-422,570-590 1zg7 d1zg7c1 C:14-30,60-67,72-90,103-110,282-307 2dea d2deaa1 A:39-60,90-97,117-136,140-149,269-290 1zg9 d1zg9b1 B:14-30,60-67,72-90,103-110,282-308 1vho d1vhoa2 A:21-34,58-66,168-189,191-200,314-332 1zg9 d1zg9a1 A:14-30,60-67,72-90,103-110,282-308 2boa d2boaa1 A:1014-1030,1060-1067,1072-1090,1103-1110,1282-1308 1zg8 d1zg8a1 A:14-30,60-67,72-90,103-110,282-308 1ft7 d1ft7a_ A:39-60,90-97,117-136,140-149,269-290 1nsa d1nsaa1 A:14-30,60-67,72-90,103-110,283-308 2pj0 d2pj0a1 A:14-30,60-67,72-90,103-110,282-308 2nyq d2nyqa1 A:39-60,90-97,117-136,140-149,269-290 2piz d2pizb1 B:14-30,60-67,72-90,103-110,282-308 2pj4 d2pj4a1 A:14-30,60-67,72-90,103-110,282-308 2pj6 d2pj6a1 A:14-30,60-67,72-90,103-110,282-308 1kwm d1kwma1 A:14-30,60-67,72-90,103-110,282-308 2pj9 d2pj9a1 A:14-30,60-67,72-90,103-110,282-308 2boa d2boab1 B:1014-1030,1060-1067,1072-1090,1103-1110,1282-1308 1cpx d1cpxa_ A:14-30,60-67,72-90,103-110,282-306 1zg7 d1zg7b1 B:14-30,60-67,72-90,103-110,282-308 2pj4 d2pj4b1 B:14-30,60-67,72-90,103-110,282-308 2imo d2imob1 B:35-53,76-85,93-114,117-127,391-412 2pj0 d2pj0b1 B:14-30,60-67,72-90,103-110,282-308 1zg7 d1zg7a1 A:14-30,60-67,72-90,103-110,282-308 1zg8 d1zg8b1 B:14-30,60-67,72-90,103-110,282-308 1bav d1bavb_ B:14-30,60-67,72-90,103-110,282-307 1rtq d1rtqa_ A:39-60,90-97,117-136,140-149,269-290 2gre d2greh2 H:24-39,63-70,187-205,209-218,327-344 1kwm d1kwmb1 B:14-30,60-67,72-90,103-110,282-308 1vix d1vixb1 B:28-46,72-79,138-159,163-171,387-408 1bav d1bavd_ D:14-30,60-67,72-90,103-110,282-307 2pcu d2pcua1 A:14-30,60-67,72-90,103-110,282-308 2piz d2piza1 A:14-30,60-67,72-90,103-110,282-308 1zg8 d1zg8c1 C:14-30,60-67,72-90,103-110,282-308 2gre d2greb2 B:24-39,62-70,186-205,209-218,327-344 2rfh d2rfha1 A:14-30,60-67,72-90,103-110,282-307 2pj5 d2pj5b1 B:14-30,60-67,72-90,103-110,282-308 1cp6 d1cp6a_ A:39-60,90-99,117-136,140-150,269-290 2pj1 d2pj1b1 B:14-30,60-67,72-90,103-110,282-308 1z2l d1z2lb1 B:35-53,77-85,93-114,117-127,391-412 2pja d2pjaa1 A:14-30,60-67,72-90,103-110,282-308 1amp d1ampa_ A:39-60,90-99,117-136,140-150,269-290 2pj5 d2pj5a1 A:14-30,60-67,72-90,103-110,282-308 2pj3 d2pj3b1 B:14-30,60-67,72-90,103-110,282-308 1z5r d1z5rb1 B:14-30,60-67,72-90,103-110,282-308 2pj3 d2pj3a1 A:14-30,60-67,72-90,103-110,282-308 1z5r d1z5ra1 A:14-30,60-67,72-90,103-110,282-308 1cg2 d1cg2b1 B:59-78,105-114,141-160,163-174,394-414 2pja d2pjab1 B:14-30,60-67,72-90,103-110,282-308 2pjb d2pjbb1 B:14-30,60-67,72-90,103-110,282-308 1vix d1vixa1 A:28-46,72-79,138-159,163-171,387-408 2piy d2piyb1 B:14-30,60-67,72-90,103-110,282-308 1f57 d1f57a_ A:14-30,60-67,72-90,103-110,282-307 1lcp d1lcpb2 B:179-196,244-250,274-291,294-306,471-484 1hdu d1hdub_ B:14-30,60-67,72-90,103-110,282-307 1hee d1heeb_ B:14-30,60-67,72-90,103-110,282-307 1hdu d1hdue_ E:14-30,60-67,72-90,103-110,282-307 1hee d1heee_ E:14-30,60-67,72-90,103-110,282-307 1hdu d1hdua_ A:14-30,60-67,72-90,103-110,282-307 1hee d1heea_ A:14-30,60-67,72-90,103-110,282-307 1cg2 d1cg2a1 A:59-78,105-114,141-160,163-174,394-414 7cpa d7cpaa_ A:14-30,60-67,72-90,103-110,282-307 2pj2 d2pj2b1 B:14-30,60-67,72-90,103-110,282-308 4cpa d4cpab_ B:14-30,60-67,72-90,103-110,282-307 2pj7 d2pj7b1 B:14-30,60-67,72-90,103-110,282-308 4cpa d4cpaa_ A:14-30,60-67,72-90,103-110,282-307 2pjc d2pjcb1 B:14-30,60-67,72-90,103-110,282-308 1hee d1heed_ D:14-30,60-67,72-90,103-110,282-307 1hdu d1hdud_ D:14-30,60-67,72-90,103-110,282-307 1gyt d1gytb2 B:199-215,264-276,294-311,313-326,483-498 2c1c d2c1cb1 B:14-30,60-67,72-89,103-110,282-309 1arm d1arma_ A:14-30,60-67,72-90,103-110,282-307 2pj1 d2pj1a1 A:14-30,60-67,72-90,103-110,282-308 2pj7 d2pj7a1 A:14-30,60-67,72-90,103-110,282-308 2pj8 d2pj8b1 B:14-30,60-67,72-90,103-110,282-308 2pjb d2pjba1 A:14-30,60-67,72-90,103-110,282-308 2pj2 d2pj2a1 A:14-30,60-67,72-90,103-110,282-308 1gyt d1gyth2 H:199-215,264-276,294-311,313-326,483-498 1pyt d1pytb_ B:14-30,60-67,72-90,103-110,282-308 1gyt d1gytl2 L:199-215,264-276,294-311,313-326,483-498 2bo9 d2bo9a1 A:14-30,60-67,72-90,103-110,282-308 2bo9 d2bo9c1 C:14-30,60-67,72-90,103-110,282-308 1gyt d1gytf2 F:199-215,264-276,294-311,313-326,483-498 2piy d2piya1 A:14-30,60-67,72-90,103-110,282-308 1cps d1cpsa_ A:14-30,60-67,72-90,103-110,282-307 1iy7 d1iy7a_ A:14-30,60-67,72-90,103-110,282-307 1gyt d1gytd2 D:199-215,264-276,294-311,313-326,483-498 2pjc d2pjca1 A:14-30,60-67,72-90,103-110,282-308 6cpa d6cpaa_ A:14-30,60-67,72-90,103-110,282-307 1gyt d1gytg2 G:199-215,264-276,294-311,313-326,483-498 1lfw d1lfwa1 A:42-60,80-89,119-138,143-152,446-468 1bpm d1bpma1 A:179-196,243-256,271-291,294-306,471-484 1bpn d1bpna1 A:179-196,243-256,274-291,294-306,471-484 1cbx d1cbxa_ A:14-30,60-67,72-90,103-110,282-307 3cpa d3cpaa_ A:14-30,60-67,72-90,103-110,282-307 1yme d1ymea_ A:14-30,60-67,72-90,103-110,282-307 1gyt d1gyte2 E:199-215,264-276,294-311,313-326,483-498 1gyt d1gytk2 K:199-215,264-276,294-311,313-326,483-498 1gyt d1gyta2 A:199-215,264-276,294-311,313-326,483-498 1m4l d1m4la_ A:14-30,60-67,72-90,103-110,282-307 2ctc d2ctca_ A:14-30,60-67,72-90,103-110,282-307 1bav d1bava_ A:14-30,60-67,72-90,103-110,282-307 1arl d1arla_ A:14-30,60-67,72-90,103-110,282-307 5cpa d5cpaa_ A:14-30,60-67,72-90,103-110,282-307 1gyt d1gyti2 I:199-215,264-276,294-311,313-326,483-498 1dtd d1dtda_ A:370-386,415-422,427-445,458-465,638-664 1bav d1bavc_ C:14-30,60-67,72-90,103-110,282-307 2ctb d2ctba_ A:14-30,60-67,72-90,103-110,282-307 2ewb d2ewba1 A:179-196,244-250,271-291,294-306,471-486 1aye d1ayea1 A:14-30,60-67,72-90,103-110,282-308 1hdq d1hdqa_ A:14-30,60-67,72-90,103-110,282-307 2pj8 d2pj8a1 A:14-30,60-67,72-90,103-110,282-308 8cpa d8cpaa_ A:14-30,60-67,72-90,103-110,282-307 1gyt d1gytc2 C:199-215,264-276,294-311,313-326,483-498 1gyt d1gytj2 J:199-215,264-276,294-311,313-326,483-498 1igb d1igba_ A:39-60,90-97,114-136,140-149,269-290 2c1c d2c1ca1 A:14-30,60-67,72-89,103-110,282-309 1cg2 d1cg2c1 C:59-78,102-114,141-160,163-174,394-414 2j9a d2j9aa1 A:179-196,243-256,274-291,294-306,471-485 1cg2 d1cg2d1 D:59-78,102-113,141-160,163-173,394-414 1z2l d1z2la1 A:35-53,76-83,93-114,117-126,391-413 2imo d2imoa1 A:35-53,76-83,91-114,117-126,391-413 1lap d1lapa1 A:179-196,244-256,274-291,294-306,469-484 1jqg d1jqga1 A:14-30,60-67,72-90,103-110,282-308 1bll d1blle2 E:179-196,244-256,272-291,294-306,471-484 1r3n d1r3nd1 D:67-85,107-114,124-144,148-157,428-455 1r3n d1r3na1 A:67-85,107-114,124-144,148-157,428-455 1r3n d1r3nb1 B:67-85,107-114,124-144,148-157,428-455 1r3n d1r3nf1 F:67-85,107-114,124-144,148-157,428-455 1r3n d1r3nh1 H:67-85,107-114,124-144,148-157,428-455 1r43 d1r43a1 A:67-85,107-114,124-144,148-157,428-455 1r3n d1r3ne1 E:67-85,107-114,124-144,148-157,428-455 1r3n d1r3nc1 C:67-85,107-114,124-144,148-157,428-455 1r3n d1r3ng1 G:67-85,107-114,124-144,148-157,428-455 1r43 d1r43b1 B:67-85,108-114,124-144,148-157,428-455 2. c.119.1 DAK1/DegV-like domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different ! DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest] 1oi3 d1oi3b_ B:20-34,55-65,66-74,80-87,159-177 1uod d1uodb_ B:20-34,55-65,66-74,80-87,159-177 1oi3 d1oi3a_ A:20-34,55-65,66-74,80-87,159-177 1oi2 d1oi2a_ A:20-34,55-65,66-74,80-87,159-177 1uoe d1uoeb_ B:20-34,55-64,66-74,80-86,159-177 1uoe d1uoea_ A:20-34,55-64,66-74,80-86,159-177 1oi2 d1oi2b_ B:20-34,55-64,66-74,80-86,159-177 1uod d1uoda_ A:20-34,55-64,66-74,80-86,159-177 1un8 d1un8b4 B:8-24,51-56,61-69,75-79,151-169 1un8 d1un8a4 A:8-24,51-56,61-69,75-79,151-169 5. d.154.1 DmpA/ArgJ-like convergent similarity to the Ntn amidohydrolases ! DmpA/ArgJ-like duplication of beta(3)-alpha-beta-alpha motif; 4 layers: alpha/beta/beta/alpha 1vz7 d1vz7d_ D:51-64,67-74,81-100,105-112,119-130 1vz7 d1vz7b_ B:51-64,67-74,81-100,105-112,119-130 1vz6 d1vz6a_ A:51-64,67-74,80-100,105-112,119-130 1vz6 d1vz6b_ B:51-64,67-74,80-100,105-112,119-130 1vz8 d1vz8d_ D:51-64,67-74,81-100,105-114,119-130 1vz8 d1vz8a_ A:51-64,67-74,80-100,105-114,119-130 1vz8 d1vz8b_ B:51-64,67-74,81-100,105-114,119-130 1vz7 d1vz7c_ C:51-64,67-74,81-98,105-114,119-130 1vz8 d1vz8c_ C:51-64,67-74,81-100,105-114,119-130 1vz7 d1vz7a_ A:51-64,67-74,80-100,105-114,119-130 9. c.20.1 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3 3 layers, a/b/a; core: parallel beta-sheet of 4 strands, order 2134 1g7t d1g7ta3 A:329-346,353-358,359-374,378-382,433-461 1g7r d1g7ra3 A:329-346,351-358,359-374,378-382,433-461