Observed motif hits of pattern ID: 1234 (enumeration index: query673.768.1294.1302.1447) of S5

List of motif hits in the counted superfamilies for pattern ID: 1234 (enumeration index: query673.768.1294.1302.1447) of S5

1.   d.379.1       Taf5 N-terminal domain-like    
                   Taf5 N-terminal domain-like multihelical cluster with a C-terminal beta-alpha(2)-beta motif; one central buried helix; parallel beta-ribbon
                   2j49  d2j49a1  A:149-166,177-194,193-209,212-223,265-277
                   2nxp  d2nxpc1  C:210-228,239-255,256-271,275-286,327-337
                   2nxp  d2nxpe1  E:210-228,239-255,256-271,275-286,327-337
                   2nxp  d2nxpf1  F:210-228,239-255,256-271,275-286,327-337
                   2nxp  d2nxpa1  A:210-228,239-255,256-271,275-286,327-337
                   2nxp  d2nxpg1  G:210-228,239-255,256-271,275-286,327-337
                   2nxp  d2nxph1  H:210-228,239-255,256-271,275-286,327-337
                   2nxp  d2nxpb1  B:210-228,239-255,256-271,275-286,327-337
                   2j4b  d2j4bb1  B:17-33,41-60,61-77,79-90,130-141
                   2nxp  d2nxpd1  D:210-228,239-255,256-271,272-286,327-337
                   2j4b  d2j4ba1  A:18-33,37-60,61-76,79-90,130-141
                   2j4b  d2j4be1  E:18-33,41-60,61-73,79-89,130-141
                   2j4b  d2j4bd1  D:18-33,37-60,61-73,79-90,130-141

4.   a.99.1        Cryptochrome/photolyase FAD-binding domain    
                   Cryptochrome/photolyase FAD-binding domain multihelical; consists of two all-alpha subdomains
                   1iqr  d1iqra1  A:292-306,309-325,327-340,343-356,369-379
                   1iqu  d1iqua1  A:292-306,309-325,327-340,343-356,369-379
                   2j07  d2j07a1  A:292-306,309-325,327-340,343-356,369-379
                   2j09  d2j09a1  A:292-306,309-325,327-340,343-356,369-379
                   2j08  d2j08a1  A:292-306,309-325,327-340,343-356,369-379
                   1u3c  d1u3ca1  A:341-355,358-374,376-388,392-405,418-428
                   1u3d  d1u3da1  A:341-355,358-374,376-388,392-405,418-428
                   1np7  d1np7a1  A:337-351,354-370,372-384,388-401,413-423
                   1np7  d1np7b1  B:337-351,354-370,372-384,388-401,413-423
                   1tez  d1teza1  A:331-345,348-364,366-378,382-395,407-417
                   1tez  d1tezd1  D:331-345,348-364,366-378,382-395,407-417
                   1tez  d1tezc1  C:331-345,348-364,366-378,382-395,407-417
                   1tez  d1tezb1  B:331-345,348-364,366-378,382-395,407-417

5.   a.118.14      FliG  fragmented superhelix; consist of 3/4-helical motifs and connecting helices !   
                   alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
                   1qc7  d1qc7a_  A:237-244,257-268,269-280,281-296,299-321
                   1qc7  d1qc7b_  B:237-245,245-256,269-281,281-296,299-321
                   1qc7  d1qc7a_  A:237-244,245-257,269-280,281-296,299-321

6.   d.334.1       IlvD/EDD N-terminal domain-like    
                   IlvD/EDD N-terminal domain-like contains a large cluster of helices and a mixed beta-sheet of 4 strands; order 2134, strands 3 and 4 are parallel
                   2gp4  d2gp4a2  A:231-238,283-298,300-315,319-331,351-364
                   2gp4  d2gp4b2  B:231-238,283-298,300-315,319-331,351-364

10.  a.267.1       Topoisomerase V catalytic domain-like    
                   Topoisomerase V catalytic domain-like multihelical; irregular array; contains small amount of beta-structure and a 3-helical bundle with a variant homeofomain-like fold and HTH motif (scop_cf 46688)
                   2csb  d2csba5  A:12-44,49-70,99-108,139-150,239-269